Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.49438 * 2 1 4 4 C 1.53194 * 109.49881 * 239.90571 * 2 1 3 5 5 N 1.46930 * 108.76938 * 294.68008 * 4 2 1 6 6 C 1.36938 * 120.62804 * 126.41474 * 5 4 2 7 7 H 1.08000 * 120.00293 * 207.67446 * 6 5 4 8 8 C 1.38817 * 120.00262 * 27.67359 * 6 5 4 9 9 N 1.31625 * 119.99590 * 17.35304 * 8 6 5 10 10 Si 1.86790 * 120.00311 * 197.35391 * 8 6 5 11 11 H 1.48498 * 109.47298 * 60.00126 * 10 8 6 12 12 H 1.48505 * 109.47352 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47406 * 300.00080 * 10 8 6 14 14 C 1.46919 * 118.74012 * 306.39139 * 5 4 2 15 15 C 1.53189 * 108.77866 * 53.61148 * 14 5 4 16 16 C 1.53040 * 109.49915 * 120.06169 * 2 1 3 17 17 H 1.09003 * 109.45831 * 178.59192 * 16 2 1 18 18 N 1.46500 * 109.46111 * 298.56574 * 16 2 1 19 19 C 1.34769 * 120.00193 * 204.99683 * 18 16 2 20 20 O 1.21286 * 119.99688 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00317 * 180.02562 * 19 18 16 22 22 H 1.09006 * 109.67557 * 60.52256 * 21 19 18 23 23 C 1.53384 * 109.71248 * 181.04694 * 21 19 18 24 24 C 1.53122 * 109.46041 * 169.36586 * 23 21 19 25 25 C 1.53356 * 109.53668 * 290.01458 * 24 23 21 26 26 C 1.50864 * 108.40923 * 49.98305 * 25 24 23 27 27 N 1.33575 * 128.02930 * 163.26178 * 26 25 24 28 28 C 1.30757 * 109.14488 * 180.02562 * 27 26 25 29 29 N 1.35309 * 108.76977 * 359.97438 * 28 27 26 30 30 H 0.96996 * 126.50340 * 179.97438 * 29 28 27 31 31 C 1.35028 * 123.99009 * 343.29709 * 26 25 24 32 32 H 1.08997 * 109.47147 * 299.93539 * 1 2 3 33 33 H 1.08998 * 109.47444 * 59.93499 * 1 2 3 34 34 H 1.09000 * 109.46415 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47068 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47176 * 300.06648 * 3 2 1 37 37 H 1.08998 * 109.47583 * 60.06292 * 3 2 1 38 38 H 1.09004 * 109.58773 * 54.46592 * 4 2 1 39 39 H 1.08989 * 109.58802 * 174.89354 * 4 2 1 40 40 H 0.97002 * 119.99913 * 180.02562 * 9 8 6 41 41 H 1.09004 * 109.58612 * 173.40326 * 14 5 4 42 42 H 1.09001 * 109.58545 * 293.82332 * 14 5 4 43 43 H 1.08996 * 109.49659 * 185.41359 * 15 14 5 44 44 H 1.08996 * 109.49776 * 65.31398 * 15 14 5 45 45 H 0.97006 * 119.99681 * 25.00810 * 18 16 2 46 46 H 1.09002 * 109.45545 * 49.37816 * 23 21 19 47 47 H 1.08999 * 109.48582 * 289.37284 * 23 21 19 48 48 H 1.09000 * 109.45877 * 169.99689 * 24 23 21 49 49 H 1.09000 * 109.46220 * 50.04021 * 24 23 21 50 50 H 1.09003 * 109.67464 * 169.70811 * 25 24 23 51 51 H 1.09001 * 109.67641 * 290.25131 * 25 24 23 52 52 H 1.07997 * 125.61542 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 1.6516 -2.1385 -1.1689 6 6 0.9640 -2.7320 -2.1936 7 1 0.3081 -3.5661 -1.9921 8 6 1.1099 -2.2618 -3.4915 9 7 2.1347 -1.4967 -3.8029 10 14 -0.1479 -2.7148 -4.7960 11 1 -1.4871 -2.2224 -4.3846 12 1 0.2334 -2.0917 -6.0890 13 1 -0.1898 -4.1910 -4.9520 14 6 2.0141 -2.9039 0.0316 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2486 17 1 3.1306 -0.7442 1.2353 18 7 1.5812 -0.0136 2.4453 19 6 2.2698 -0.1216 3.5987 20 8 3.2704 -0.8054 3.6459 21 6 1.7967 0.6073 4.8299 22 1 0.7972 0.2646 5.0979 23 6 2.7624 0.3417 5.9915 24 6 2.4339 1.2833 7.1535 25 6 2.8162 2.7191 6.7738 26 6 2.2223 3.0286 5.4220 27 7 2.0433 4.2253 4.8562 28 6 1.4975 4.0657 3.6788 29 7 1.3123 2.7432 3.4604 30 1 0.9255 2.3378 2.6687 31 6 1.7702 2.0897 4.5632 32 1 -0.3633 0.5128 0.8905 33 1 -0.3634 0.5148 -0.8894 34 1 -0.3632 -1.0277 -0.0005 35 1 3.1307 1.4419 -0.0005 36 1 1.6765 1.9567 -0.8894 37 1 1.6785 1.9560 0.8905 38 1 1.6007 -0.2737 -2.1389 39 1 3.1274 -0.6466 -1.2979 40 1 2.2365 -1.1678 -4.7098 41 1 1.5556 -3.8918 -0.0126 42 1 3.0980 -3.0041 0.0876 43 1 1.8482 -2.6622 2.1678 44 1 0.4134 -2.1351 1.2547 45 1 0.7810 0.5335 2.4075 46 1 3.7859 0.5168 5.6601 47 1 2.6590 -0.6921 6.3212 48 1 2.9956 0.9795 8.0369 49 1 1.3663 1.2364 7.3683 50 1 2.4206 3.4126 7.5159 51 1 3.9014 2.8099 6.7275 52 1 1.2373 4.8588 2.9935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941022898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = 28.715980 kcal Electronic energy + Delta-G solvation = -32618.522664 eV Core-core repulsion = 28618.639764 eV Total energy + Delta-G solvation = -3999.882900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.61613 -40.16959 -38.45045 -36.48780 -34.75700 -33.56681 -32.87133 -32.03004 -30.47073 -29.38389 -29.08277 -26.94995 -26.12632 -25.48491 -24.15286 -22.54943 -22.38657 -21.62988 -20.72936 -20.55608 -19.13377 -18.54311 -17.91136 -17.26944 -16.60798 -15.94035 -15.55010 -15.00353 -14.98414 -14.81128 -14.55694 -14.24569 -13.98292 -13.80885 -13.73640 -13.47986 -13.44126 -13.15373 -12.92782 -12.64188 -12.42362 -12.19878 -11.84390 -11.63220 -11.46543 -11.43755 -11.15928 -11.14691 -11.10360 -10.97224 -10.78430 -10.67787 -10.39402 -10.29753 -10.20549 -10.07166 -10.06138 -9.89182 -9.73374 -9.49891 -8.83790 -8.52709 -8.36502 -6.75734 -5.86688 -3.28488 1.74237 2.55272 2.84741 2.90542 3.20165 3.32706 3.39087 3.39529 4.21409 4.35282 4.42674 4.52882 4.58996 4.78013 4.95801 5.02189 5.08748 5.14581 5.15993 5.23970 5.28568 5.39356 5.42505 5.45848 5.66131 5.71134 5.74786 5.77571 5.80975 5.85940 5.88892 5.95397 6.01419 6.07212 6.12688 6.15534 6.25663 6.32630 6.37387 6.45472 6.52246 6.57773 6.72278 6.79112 6.86974 6.92847 7.10647 7.20677 7.44658 7.55542 7.72597 7.85670 8.19626 8.36692 9.13145 9.76272 10.33014 11.22035 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002919 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.659191 B = 9588.797019 C =10386.619623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.130 4.130 4 C 0.188 3.812 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.901 3.099 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.724 5.724 19 C 0.514 3.486 20 O -0.527 6.527 21 C -0.030 4.030 22 H 0.107 0.893 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.036 4.036 26 C 0.018 3.982 27 N -0.486 5.486 28 C 0.186 3.814 29 N -0.559 5.559 30 H 0.416 0.584 31 C -0.024 4.024 32 H 0.023 0.977 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.020 0.980 40 H 0.255 0.745 41 H 0.057 0.943 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.385 0.615 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.390 8.782 18.027 20.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.101 4.101 3 C -0.188 4.188 4 C 0.061 3.939 5 N -0.311 5.311 6 C -0.382 4.382 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.731 3.269 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.402 6.402 21 C -0.052 4.052 22 H 0.125 0.875 23 C -0.133 4.133 24 C -0.156 4.156 25 C -0.074 4.074 26 C -0.113 4.113 27 N -0.205 5.205 28 C -0.097 4.097 29 N -0.163 5.163 30 H 0.256 0.744 31 C -0.141 4.141 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.220 0.780 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.382 9.102 18.235 20.519 hybrid contribution -1.548 -0.716 -1.779 2.465 sum -3.930 8.385 16.456 18.883 Atomic orbital electron populations 1.21761 0.94697 1.02860 0.99126 1.21608 0.96260 0.94810 0.97451 1.21766 1.01129 0.95965 0.99966 1.20807 0.96384 0.83602 0.93130 1.44037 1.65195 1.05587 1.16235 1.19116 1.18109 1.15203 0.85767 0.91689 1.25024 0.96979 1.00510 0.96944 1.70015 1.27307 1.38340 1.18954 0.86395 0.81349 0.78178 0.81002 1.21063 1.21650 1.20881 1.20879 0.96707 0.94307 0.86118 1.22442 1.00985 0.95205 0.99604 1.21063 0.99404 0.91479 0.82152 0.89926 1.46492 1.29263 1.50855 1.10992 1.20444 0.83889 0.81481 0.84305 1.90718 1.24976 1.40159 1.84371 1.19966 1.02350 0.87838 0.95082 0.87519 1.21413 0.99287 1.00121 0.92514 1.21637 1.01973 0.93965 0.97983 1.19981 1.00176 0.96383 0.90835 1.20504 1.04790 0.87942 0.98032 1.70016 1.17514 1.26265 1.06656 1.25083 1.03316 0.84586 0.96716 1.43194 1.48113 1.08463 1.16559 0.74352 1.20489 1.08827 0.94520 0.90247 0.95755 0.92662 0.90789 0.92744 0.92178 0.95147 0.88787 0.96213 0.93523 0.92489 0.96209 0.92680 0.91852 0.78044 0.90166 0.90236 0.90522 0.91521 0.90368 0.90464 0.77371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.83 37.16 0.29 -1.67 16 2 C -0.10 -1.63 0.56 -154.38 -0.09 -1.71 16 3 C -0.13 -1.85 8.31 37.16 0.31 -1.54 16 4 C 0.19 4.10 3.99 -3.71 -0.01 4.09 16 5 N -0.59 -13.76 2.43 -172.32 -0.42 -14.18 16 6 C -0.25 -6.55 9.59 -15.06 -0.14 -6.69 16 7 H 0.07 1.67 7.89 -52.49 -0.41 1.25 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -25.09 11.19 55.49 0.62 -24.47 16 10 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.15 3.00 6.51 -3.72 -0.02 2.98 16 15 C -0.14 -2.43 5.31 -26.61 -0.14 -2.57 16 16 C 0.16 2.62 1.57 -67.89 -0.11 2.51 16 17 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 18 N -0.72 -9.33 3.84 -53.77 -0.21 -9.53 16 19 C 0.51 7.03 7.11 -10.99 -0.08 6.95 16 20 O -0.53 -9.19 15.50 5.55 0.09 -9.11 16 21 C -0.03 -0.31 2.90 -92.75 -0.27 -0.58 16 22 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 23 C -0.10 -0.93 4.67 -26.47 -0.12 -1.05 16 24 C -0.12 -0.90 5.90 -26.48 -0.16 -1.06 16 25 C -0.04 -0.33 6.30 -27.62 -0.17 -0.50 16 26 C 0.02 0.21 6.98 -82.89 -0.58 -0.37 16 27 N -0.49 -6.12 11.25 -10.74 -0.12 -6.24 16 28 C 0.19 1.86 13.05 -89.92 -1.17 0.69 16 29 N -0.56 -5.47 5.89 -10.28 -0.06 -5.53 16 30 H 0.42 3.52 5.16 -40.82 -0.21 3.31 16 31 C -0.02 -0.27 6.32 -81.86 -0.52 -0.79 16 32 H 0.02 0.28 6.58 -51.93 -0.34 -0.06 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.34 5.75 -51.93 -0.30 0.04 16 38 H 0.09 2.32 6.04 -51.93 -0.31 2.00 16 39 H 0.02 0.48 8.14 -51.94 -0.42 0.05 16 40 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 45 H 0.38 4.11 4.66 -40.82 -0.19 3.92 16 46 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -31.35 388.49 -10.59 -41.94 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.24 Total: 6.67 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -3.07 Total: -1.28 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.19 Total: -59.95 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.35 -10.59 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.656 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds