Wall clock time and date at job start Wed Apr 1 2020 04:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.49438 * 2 1 4 4 C 1.53194 * 109.49881 * 239.90571 * 2 1 3 5 5 N 1.46930 * 108.76938 * 294.68008 * 4 2 1 6 6 C 1.36938 * 120.62804 * 126.41474 * 5 4 2 7 7 H 1.08000 * 120.00293 * 207.67446 * 6 5 4 8 8 C 1.38817 * 120.00262 * 27.67359 * 6 5 4 9 9 N 1.31625 * 119.99590 * 17.35304 * 8 6 5 10 10 Si 1.86790 * 120.00311 * 197.35391 * 8 6 5 11 11 H 1.48498 * 109.47298 * 60.00126 * 10 8 6 12 12 H 1.48505 * 109.47352 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47406 * 300.00080 * 10 8 6 14 14 C 1.46919 * 118.74012 * 306.39139 * 5 4 2 15 15 C 1.53189 * 108.77866 * 53.61148 * 14 5 4 16 16 C 1.53040 * 109.49915 * 120.06169 * 2 1 3 17 17 H 1.09003 * 109.45831 * 178.59192 * 16 2 1 18 18 N 1.46500 * 109.46111 * 298.56574 * 16 2 1 19 19 C 1.34769 * 120.00193 * 204.99683 * 18 16 2 20 20 O 1.21286 * 119.99688 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00317 * 180.02562 * 19 18 16 22 22 H 1.09006 * 109.67557 * 60.52256 * 21 19 18 23 23 C 1.53384 * 109.71248 * 181.04694 * 21 19 18 24 24 C 1.53122 * 109.46041 * 169.36586 * 23 21 19 25 25 C 1.53356 * 109.53668 * 290.01458 * 24 23 21 26 26 C 1.50864 * 108.40923 * 49.98305 * 25 24 23 27 27 N 1.33575 * 128.02930 * 163.26178 * 26 25 24 28 28 C 1.30757 * 109.14488 * 180.02562 * 27 26 25 29 29 N 1.35309 * 108.76977 * 359.97438 * 28 27 26 30 30 H 0.96996 * 126.50340 * 179.97438 * 29 28 27 31 31 C 1.35028 * 123.99009 * 343.29709 * 26 25 24 32 32 H 1.08997 * 109.47147 * 299.93539 * 1 2 3 33 33 H 1.08998 * 109.47444 * 59.93499 * 1 2 3 34 34 H 1.09000 * 109.46415 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47068 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47176 * 300.06648 * 3 2 1 37 37 H 1.08998 * 109.47583 * 60.06292 * 3 2 1 38 38 H 1.09004 * 109.58773 * 54.46592 * 4 2 1 39 39 H 1.08989 * 109.58802 * 174.89354 * 4 2 1 40 40 H 0.97002 * 119.99913 * 180.02562 * 9 8 6 41 41 H 1.09004 * 109.58612 * 173.40326 * 14 5 4 42 42 H 1.09001 * 109.58545 * 293.82332 * 14 5 4 43 43 H 1.08996 * 109.49659 * 185.41359 * 15 14 5 44 44 H 1.08996 * 109.49776 * 65.31398 * 15 14 5 45 45 H 0.97006 * 119.99681 * 25.00810 * 18 16 2 46 46 H 1.09002 * 109.45545 * 49.37816 * 23 21 19 47 47 H 1.08999 * 109.48582 * 289.37284 * 23 21 19 48 48 H 1.09000 * 109.45877 * 169.99689 * 24 23 21 49 49 H 1.09000 * 109.46220 * 50.04021 * 24 23 21 50 50 H 1.09003 * 109.67464 * 169.70811 * 25 24 23 51 51 H 1.09001 * 109.67641 * 290.25131 * 25 24 23 52 52 H 1.07997 * 125.61542 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 1.6516 -2.1385 -1.1689 6 6 0.9640 -2.7320 -2.1936 7 1 0.3081 -3.5661 -1.9921 8 6 1.1099 -2.2618 -3.4915 9 7 2.1347 -1.4967 -3.8029 10 14 -0.1479 -2.7148 -4.7960 11 1 -1.4871 -2.2224 -4.3846 12 1 0.2334 -2.0917 -6.0890 13 1 -0.1898 -4.1910 -4.9520 14 6 2.0141 -2.9039 0.0316 15 6 1.5031 -2.1554 1.2666 16 6 2.0409 -0.7227 1.2486 17 1 3.1306 -0.7442 1.2353 18 7 1.5812 -0.0136 2.4453 19 6 2.2698 -0.1216 3.5987 20 8 3.2704 -0.8054 3.6459 21 6 1.7967 0.6073 4.8299 22 1 0.7972 0.2646 5.0979 23 6 2.7624 0.3417 5.9915 24 6 2.4339 1.2833 7.1535 25 6 2.8162 2.7191 6.7738 26 6 2.2223 3.0286 5.4220 27 7 2.0433 4.2253 4.8562 28 6 1.4975 4.0657 3.6788 29 7 1.3123 2.7432 3.4604 30 1 0.9255 2.3378 2.6687 31 6 1.7702 2.0897 4.5632 32 1 -0.3633 0.5128 0.8905 33 1 -0.3634 0.5148 -0.8894 34 1 -0.3632 -1.0277 -0.0005 35 1 3.1307 1.4419 -0.0005 36 1 1.6765 1.9567 -0.8894 37 1 1.6785 1.9560 0.8905 38 1 1.6007 -0.2737 -2.1389 39 1 3.1274 -0.6466 -1.2979 40 1 2.2365 -1.1678 -4.7098 41 1 1.5556 -3.8918 -0.0126 42 1 3.0980 -3.0041 0.0876 43 1 1.8482 -2.6622 2.1678 44 1 0.4134 -2.1351 1.2547 45 1 0.7810 0.5335 2.4075 46 1 3.7859 0.5168 5.6601 47 1 2.6590 -0.6921 6.3212 48 1 2.9956 0.9795 8.0369 49 1 1.3663 1.2364 7.3683 50 1 2.4206 3.4126 7.5159 51 1 3.9014 2.8099 6.7275 52 1 1.2373 4.8588 2.9935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941022898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:42 Heat of formation + Delta-G solvation = 11.267543 kcal Electronic energy + Delta-G solvation = -32619.279285 eV Core-core repulsion = 28618.639764 eV Total energy + Delta-G solvation = -4000.639521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.41142 -41.41162 -39.78333 -37.32832 -36.32086 -34.67883 -34.10741 -33.68507 -31.53900 -30.77498 -29.86773 -28.22021 -27.69328 -27.04423 -25.28416 -23.88205 -23.19707 -22.51144 -22.33859 -21.72481 -19.90756 -19.79725 -19.05277 -18.71644 -17.92506 -17.16768 -16.80035 -16.49845 -15.97155 -15.76563 -15.64524 -15.41535 -15.32802 -15.22004 -15.01545 -14.74522 -14.56310 -14.32928 -14.17333 -13.85431 -13.51107 -13.29470 -13.11546 -12.98075 -12.93612 -12.77932 -12.62372 -12.49167 -12.36414 -12.17090 -11.98180 -11.86303 -11.83321 -11.81274 -11.71949 -11.40078 -11.32730 -11.13494 -10.86556 -10.70018 -10.54332 -10.09172 -9.16577 -8.70127 -7.87969 -5.32629 0.94188 1.47875 1.48688 1.51206 1.55787 1.97491 2.09790 2.19854 2.50865 3.26993 3.47432 3.50334 3.60924 3.64795 3.76174 3.83420 3.92137 4.00523 4.11066 4.29125 4.29270 4.35061 4.38698 4.43281 4.52168 4.53084 4.60347 4.67197 4.71950 4.79303 4.88197 4.93876 4.98545 5.00750 5.01924 5.04812 5.14233 5.16049 5.19758 5.25878 5.28002 5.29168 5.37936 5.43753 5.48567 5.58936 5.67524 5.71393 5.75849 6.36415 6.38861 6.42411 7.08074 7.11638 7.14104 7.83605 8.36557 9.18557 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021293 B = 0.002919 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.659191 B = 9588.797019 C =10386.619623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.088 4.088 3 C -0.125 4.125 4 C 0.196 3.804 5 N -0.602 5.602 6 C -0.258 4.258 7 H 0.067 0.933 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.274 1.274 12 H -0.297 1.297 13 H -0.280 1.280 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.175 3.825 17 H 0.051 0.949 18 N -0.710 5.710 19 C 0.514 3.486 20 O -0.567 6.567 21 C -0.019 4.019 22 H 0.136 0.864 23 C -0.095 4.095 24 C -0.107 4.107 25 C -0.038 4.038 26 C 0.000 4.000 27 N -0.522 5.522 28 C 0.192 3.808 29 N -0.555 5.555 30 H 0.422 0.578 31 C -0.035 4.035 32 H 0.069 0.931 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.065 0.935 39 H -0.017 1.017 40 H 0.250 0.750 41 H 0.058 0.942 42 H 0.002 0.998 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.400 0.600 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.837 9.772 19.911 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.090 4.090 3 C -0.183 4.183 4 C 0.070 3.930 5 N -0.324 5.324 6 C -0.388 4.388 7 H 0.085 0.915 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.792 3.208 11 H -0.200 1.200 12 H -0.223 1.223 13 H -0.206 1.206 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.070 0.930 18 N -0.363 5.363 19 C 0.301 3.699 20 O -0.445 6.445 21 C -0.042 4.042 22 H 0.153 0.847 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.076 4.076 26 C -0.129 4.129 27 N -0.242 5.242 28 C -0.091 4.091 29 N -0.160 5.160 30 H 0.264 0.736 31 C -0.152 4.152 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.001 0.999 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.238 0.762 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.090 0.910 52 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -4.863 10.096 20.154 23.060 hybrid contribution -0.696 -1.037 -2.360 2.670 sum -5.559 9.059 17.794 20.726 Atomic orbital electron populations 1.21690 0.92981 1.02166 1.01056 1.21354 0.97419 0.95477 0.94734 1.21714 1.00236 0.94522 1.01858 1.20583 0.94021 0.83556 0.94852 1.44254 1.65140 1.06479 1.16557 1.19424 1.17803 1.15033 0.86531 0.91531 1.25725 0.98571 1.01040 0.98816 1.70181 1.29057 1.39883 1.18920 0.85406 0.79431 0.77777 0.78211 1.20016 1.22336 1.20564 1.20961 0.95761 0.94848 0.86715 1.22241 1.01494 0.95294 0.97695 1.20633 0.97553 0.91423 0.83391 0.93050 1.46198 1.29705 1.50557 1.09791 1.21059 0.83048 0.80810 0.85010 1.90713 1.26783 1.42022 1.85011 1.19981 1.03766 0.87146 0.93284 0.84672 1.21421 0.97766 1.01097 0.93034 1.21592 1.03034 0.92227 0.97586 1.20075 0.99776 0.97610 0.90189 1.20934 1.04879 0.88022 0.99110 1.70026 1.19059 1.26996 1.08090 1.25799 1.01642 0.85281 0.96421 1.43167 1.47978 1.08437 1.16451 0.73632 1.20536 1.09393 0.94512 0.90735 0.91268 0.93295 0.92771 0.94230 0.91847 0.91648 0.91641 0.99909 0.94137 0.92327 0.98045 0.92151 0.90559 0.76219 0.92630 0.89610 0.88667 0.90221 0.89680 0.91039 0.74078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 7.83 71.98 0.56 -2.90 16 2 C -0.09 -2.83 0.56 -52.10 -0.03 -2.86 16 3 C -0.13 -3.39 8.31 71.98 0.60 -2.79 16 4 C 0.20 8.92 3.99 86.36 0.34 9.26 16 5 N -0.60 -28.89 2.43 -699.10 -1.70 -30.59 16 6 C -0.26 -13.58 9.59 84.03 0.81 -12.77 16 7 H 0.07 3.42 7.89 -2.91 -0.02 3.40 16 8 C -0.05 -2.48 4.91 84.86 0.42 -2.06 16 9 N -0.93 -53.77 11.19 21.65 0.24 -53.53 16 10 Si 0.96 43.38 29.59 68.60 2.03 45.41 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 13 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 14 C 0.14 5.99 6.51 86.36 0.56 6.55 16 15 C -0.13 -4.26 5.31 30.67 0.16 -4.10 16 16 C 0.17 5.53 1.57 45.02 0.07 5.60 16 17 H 0.05 1.99 7.58 -2.39 -0.02 1.98 16 18 N -0.71 -16.62 3.84 -442.41 -1.70 -18.32 16 19 C 0.51 13.14 7.11 87.66 0.62 13.77 16 20 O -0.57 -19.58 15.50 -3.05 -0.05 -19.62 16 21 C -0.02 -0.36 2.90 -12.18 -0.04 -0.39 16 22 H 0.14 1.75 8.14 -2.38 -0.02 1.73 16 23 C -0.09 -1.67 4.67 30.76 0.14 -1.53 16 24 C -0.11 -1.36 5.90 30.75 0.18 -1.18 16 25 C -0.04 -0.65 6.30 30.02 0.19 -0.46 16 26 C 0.00 0.01 6.98 41.61 0.29 0.30 16 27 N -0.52 -12.12 11.25 -187.90 -2.11 -14.23 16 28 C 0.19 3.27 13.05 180.10 2.35 5.62 16 29 N -0.56 -9.07 5.89 -186.45 -1.10 -10.17 16 30 H 0.42 5.44 5.16 -92.71 -0.48 4.96 16 31 C -0.04 -0.69 6.32 41.14 0.26 -0.43 16 32 H 0.07 1.33 6.58 -2.39 -0.02 1.32 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.79 5.97 -2.39 -0.01 1.77 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.28 5.75 -2.39 -0.01 1.27 16 38 H 0.07 3.36 6.04 -2.38 -0.01 3.34 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.24 16 41 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 2.39 6.33 -2.39 -0.02 2.38 16 45 H 0.40 6.99 4.66 -92.70 -0.43 6.55 16 46 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 47 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -71.61 388.49 3.14 -68.47 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: 0.03 Total: 22.95 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: 7.50 Total: 9.64 kcal Atomic # 7 Polarization: -120.48 SS G_CDS: -6.37 Total: -126.84 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.61 3.14 -68.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.733 kcal (2) G-P(sol) polarization free energy of solvation -71.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds