Wall clock time and date at job start Wed Apr 1 2020 04:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.52293 * 2 1 4 4 C 1.53190 * 109.49942 * 239.92148 * 2 1 3 5 5 N 1.46928 * 108.77105 * 294.68046 * 4 2 1 6 6 C 1.36938 * 120.62792 * 126.41077 * 5 4 2 7 7 H 1.08005 * 120.00219 * 207.67085 * 6 5 4 8 8 C 1.38814 * 120.00002 * 27.67683 * 6 5 4 9 9 N 1.31617 * 120.00265 * 17.36072 * 8 6 5 10 10 Si 1.86799 * 119.99977 * 197.36394 * 8 6 5 11 11 H 1.48506 * 109.47049 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47539 * 119.99514 * 10 8 6 13 13 H 1.48496 * 109.47396 * 239.99686 * 10 8 6 14 14 C 1.46923 * 118.74043 * 306.39272 * 5 4 2 15 15 C 1.53187 * 108.77636 * 53.60631 * 14 5 4 16 16 C 1.53034 * 109.31477 * 305.36581 * 15 14 5 17 17 H 1.08999 * 109.45228 * 301.35379 * 16 15 14 18 18 N 1.46500 * 109.46335 * 181.38697 * 16 15 14 19 19 C 1.34770 * 120.00064 * 84.92804 * 18 16 15 20 20 O 1.21281 * 120.00277 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99994 * 180.02562 * 19 18 16 22 22 H 1.09006 * 109.67522 * 300.51795 * 21 19 18 23 23 C 1.53403 * 109.68298 * 180.02562 * 21 19 18 24 24 C 1.53125 * 109.44437 * 190.63326 * 23 21 19 25 25 C 1.53352 * 109.51763 * 70.01796 * 24 23 21 26 26 C 1.50860 * 108.42002 * 310.00611 * 25 24 23 27 27 N 1.33576 * 128.03656 * 196.78635 * 26 25 24 28 28 C 1.30752 * 109.14476 * 179.84443 * 27 26 25 29 29 N 1.35305 * 108.76721 * 0.02562 * 28 27 26 30 30 H 0.97000 * 126.49793 * 180.02562 * 29 28 27 31 31 C 1.35026 * 123.98100 * 16.67086 * 26 25 24 32 32 H 1.09002 * 109.46827 * 299.91888 * 1 2 3 33 33 H 1.08997 * 109.47455 * 59.91920 * 1 2 3 34 34 H 1.09003 * 109.47222 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.47472 * 180.08234 * 3 2 1 36 36 H 1.09001 * 109.47057 * 300.07916 * 3 2 1 37 37 H 1.08997 * 109.47370 * 60.08517 * 3 2 1 38 38 H 1.08999 * 109.59041 * 54.46483 * 4 2 1 39 39 H 1.08993 * 109.59079 * 174.89685 * 4 2 1 40 40 H 0.97000 * 120.00072 * 180.02562 * 9 8 6 41 41 H 1.09003 * 109.58719 * 173.39735 * 14 5 4 42 42 H 1.09004 * 109.58317 * 293.81497 * 14 5 4 43 43 H 1.09002 * 109.49593 * 185.41452 * 15 14 5 44 44 H 1.09000 * 109.49981 * 65.32074 * 15 14 5 45 45 H 0.96996 * 119.99801 * 264.93529 * 18 16 15 46 46 H 1.08999 * 109.47690 * 70.63570 * 23 21 19 47 47 H 1.09005 * 109.47341 * 310.62709 * 23 21 19 48 48 H 1.08998 * 109.45805 * 190.02852 * 24 23 21 49 49 H 1.08999 * 109.45921 * 310.00472 * 24 23 21 50 50 H 1.09000 * 109.67845 * 69.75098 * 25 24 23 51 51 H 1.08999 * 109.67462 * 190.28249 * 25 24 23 52 52 H 1.08002 * 125.61165 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1695 6 6 0.9639 -2.7314 -2.1944 7 1 0.3080 -3.5655 -1.9930 8 6 1.1098 -2.2607 -3.4921 9 7 2.1345 -1.4957 -3.8034 10 14 -0.1483 -2.7131 -4.7967 11 1 -1.1958 -3.5774 -4.1956 12 1 -0.7731 -1.4768 -5.3317 13 1 0.5239 -3.4453 -5.8999 14 6 2.0140 -2.9039 0.0308 15 6 1.5030 -2.1557 1.2660 16 6 2.0408 -0.7230 1.2484 17 1 3.1305 -0.7445 1.2351 18 7 1.5811 -0.0143 2.4453 19 6 2.2698 -0.1227 3.5987 20 8 3.2703 -0.8065 3.6457 21 6 1.7966 0.6059 4.8301 22 1 1.7689 1.6779 4.6343 23 6 2.7488 0.3190 5.9981 24 6 2.1295 0.8361 7.2995 25 6 0.9271 -0.0376 7.6773 26 6 0.0325 -0.1655 6.4694 27 7 -1.2418 -0.5639 6.4274 28 6 -1.6600 -0.5334 5.1890 29 7 -0.6476 -0.1090 4.3979 30 1 -0.6778 0.0084 3.4355 31 6 0.4210 0.1223 5.2087 32 1 -0.3633 0.5126 0.8907 33 1 -0.3634 0.5151 -0.8892 34 1 -0.3634 -1.0277 -0.0005 35 1 3.1313 1.4411 -0.0015 36 1 1.6772 1.9566 -0.8893 37 1 1.6796 1.9558 0.8907 38 1 1.6007 -0.2731 -2.1389 39 1 3.1274 -0.6462 -1.2980 40 1 2.2363 -1.1665 -4.7102 41 1 1.5554 -3.8918 -0.0137 42 1 3.0980 -3.0042 0.0867 43 1 1.8481 -2.6627 2.1671 44 1 0.4133 -2.1354 1.2542 45 1 0.7811 0.5328 2.4077 46 1 3.7001 0.8216 5.8234 47 1 2.9145 -0.7556 6.0763 48 1 2.8723 0.7958 8.0962 49 1 1.8008 1.8661 7.1611 50 1 1.2728 -1.0247 7.9844 51 1 0.3764 0.4292 8.4939 52 1 -2.6505 -0.8026 4.8529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941022899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:47 Heat of formation + Delta-G solvation = 27.608821 kcal Electronic energy + Delta-G solvation = -32598.356983 eV Core-core repulsion = 28598.426073 eV Total energy + Delta-G solvation = -3999.930910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.60106 -40.16953 -38.43589 -36.48635 -34.74088 -33.59180 -32.79474 -32.05355 -30.47629 -29.37222 -29.08464 -26.93588 -26.06861 -25.48767 -24.15294 -22.54376 -22.38926 -21.60873 -20.72140 -20.55328 -19.12597 -18.49463 -17.97195 -17.21864 -16.60101 -15.87623 -15.66010 -15.02119 -14.94327 -14.84759 -14.50013 -14.17900 -13.93673 -13.85842 -13.68684 -13.53619 -13.40389 -13.24039 -12.76971 -12.70267 -12.39568 -12.21475 -11.78851 -11.62354 -11.47902 -11.41751 -11.16288 -11.14898 -11.10362 -10.98411 -10.76175 -10.69234 -10.36309 -10.29827 -10.19141 -10.07276 -10.05402 -9.84800 -9.74659 -9.48640 -8.83620 -8.53376 -8.35860 -6.75706 -5.86814 -3.28593 1.74983 2.55707 2.86906 2.91605 3.20026 3.31001 3.39814 3.41169 4.22213 4.35645 4.42510 4.54151 4.59176 4.78981 4.96524 5.04366 5.08933 5.15630 5.17663 5.24677 5.30192 5.39756 5.45147 5.45933 5.66308 5.72597 5.75053 5.77229 5.81570 5.89225 5.93176 5.97236 6.01935 6.08230 6.14629 6.17843 6.28264 6.32726 6.37418 6.48214 6.52813 6.58927 6.72480 6.79760 6.86744 6.91385 7.11583 7.21499 7.45431 7.56495 7.73150 7.86522 8.20067 8.36558 9.13172 9.76242 10.32941 11.21852 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002952 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.240803 B = 9481.637860 C =10009.490944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 C -0.134 4.134 4 C 0.187 3.813 5 N -0.589 5.589 6 C -0.251 4.251 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.901 5.901 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.141 4.141 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.724 5.724 19 C 0.514 3.486 20 O -0.527 6.527 21 C -0.029 4.029 22 H 0.106 0.894 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.036 4.036 26 C 0.018 3.982 27 N -0.486 5.486 28 C 0.186 3.814 29 N -0.558 5.558 30 H 0.417 0.583 31 C -0.024 4.024 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.385 0.615 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.077 0.923 51 H 0.078 0.922 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 8.490 18.248 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.192 4.192 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.216 1.216 13 H -0.217 1.217 14 C 0.020 3.980 15 C -0.181 4.181 16 C 0.059 3.941 17 H 0.102 0.898 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.402 6.402 21 C -0.052 4.052 22 H 0.124 0.876 23 C -0.134 4.134 24 C -0.155 4.155 25 C -0.074 4.074 26 C -0.113 4.113 27 N -0.205 5.205 28 C -0.097 4.097 29 N -0.161 5.161 30 H 0.256 0.744 31 C -0.140 4.140 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.220 0.780 46 H 0.097 0.903 47 H 0.099 0.901 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.096 0.904 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.376 7.778 18.805 20.628 hybrid contribution -0.774 0.383 -2.165 2.331 sum -4.150 8.161 16.639 18.992 Atomic orbital electron populations 1.21754 0.94923 1.02549 0.99143 1.21584 0.96135 0.95045 0.97267 1.21766 1.00964 0.95841 1.00631 1.20820 0.96406 0.83534 0.93224 1.44062 1.65202 1.05629 1.16204 1.19194 1.17995 1.15104 0.85763 0.91635 1.25022 0.97009 1.00515 0.96945 1.70030 1.27343 1.38402 1.18778 0.86269 0.81220 0.77738 0.81833 1.20275 1.21584 1.21716 1.20871 0.96725 0.94282 0.86118 1.22430 1.00740 0.95351 0.99603 1.21061 0.99524 0.91282 0.82224 0.89849 1.46483 1.29361 1.50765 1.10968 1.20447 0.83850 0.81659 0.84176 1.90717 1.25301 1.39702 1.84516 1.19960 0.89890 1.00451 0.94905 0.87583 1.21421 0.96945 1.03468 0.91534 1.21636 0.97110 0.99469 0.97334 1.19977 0.93350 1.00662 0.93395 1.20497 0.92185 1.04911 0.93695 1.70014 1.11114 1.19934 1.19454 1.25085 0.95200 1.03497 0.85876 1.43095 1.11020 1.51194 1.10829 0.74360 1.20465 0.90328 1.11480 0.91764 0.95917 0.92611 0.90932 0.92897 0.92468 0.94034 0.88807 0.96201 0.93634 0.92538 0.96183 0.92837 0.92132 0.77985 0.90280 0.90131 0.90530 0.91532 0.90468 0.90381 0.77357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 7.83 37.15 0.29 -1.63 16 2 C -0.10 -1.62 0.56 -154.39 -0.09 -1.70 16 3 C -0.13 -1.94 8.31 37.16 0.31 -1.63 16 4 C 0.19 4.09 3.99 -3.71 -0.01 4.08 16 5 N -0.59 -13.78 2.43 -172.32 -0.42 -14.19 16 6 C -0.25 -6.52 9.59 -15.06 -0.14 -6.66 16 7 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 8 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 9 N -0.90 -25.08 11.19 55.49 0.62 -24.46 16 10 Si 0.90 20.90 29.59 -169.99 -5.03 15.87 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.15 3.02 6.52 -3.72 -0.02 3.00 16 15 C -0.14 -2.43 5.31 -26.62 -0.14 -2.57 16 16 C 0.16 2.61 1.57 -67.89 -0.11 2.50 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 18 N -0.72 -9.19 3.83 -53.77 -0.21 -9.39 16 19 C 0.51 6.97 7.09 -10.99 -0.08 6.89 16 20 O -0.53 -9.17 15.49 5.56 0.09 -9.08 16 21 C -0.03 -0.31 2.90 -92.74 -0.27 -0.57 16 22 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 23 C -0.10 -0.93 4.68 -26.46 -0.12 -1.05 16 24 C -0.12 -0.90 5.90 -26.48 -0.16 -1.05 16 25 C -0.04 -0.33 6.30 -27.62 -0.17 -0.51 16 26 C 0.02 0.21 6.98 -82.90 -0.58 -0.37 16 27 N -0.49 -6.16 11.25 -10.74 -0.12 -6.28 16 28 C 0.19 1.87 13.05 -89.93 -1.17 0.70 16 29 N -0.56 -5.43 5.90 -10.29 -0.06 -5.49 16 30 H 0.42 3.44 6.86 -40.82 -0.28 3.16 16 31 C -0.02 -0.26 6.32 -81.86 -0.52 -0.78 16 32 H 0.02 0.26 6.58 -51.93 -0.34 -0.09 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 35 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 38 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.01 6.33 -51.93 -0.33 0.68 16 45 H 0.39 4.01 4.77 -40.82 -0.19 3.82 16 46 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.94 7.73 -51.93 -0.40 0.53 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -31.53 391.87 -10.70 -42.22 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -8.40 Total: 6.25 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -3.07 Total: -1.34 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.19 Total: -59.82 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.53 -10.70 -42.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.833 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds