Wall clock time and date at job start Wed Apr 1 2020 04:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.52293 * 2 1 4 4 C 1.53190 * 109.49942 * 239.92148 * 2 1 3 5 5 N 1.46928 * 108.77105 * 294.68046 * 4 2 1 6 6 C 1.36938 * 120.62792 * 126.41077 * 5 4 2 7 7 H 1.08005 * 120.00219 * 207.67085 * 6 5 4 8 8 C 1.38814 * 120.00002 * 27.67683 * 6 5 4 9 9 N 1.31617 * 120.00265 * 17.36072 * 8 6 5 10 10 Si 1.86799 * 119.99977 * 197.36394 * 8 6 5 11 11 H 1.48506 * 109.47049 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47539 * 119.99514 * 10 8 6 13 13 H 1.48496 * 109.47396 * 239.99686 * 10 8 6 14 14 C 1.46923 * 118.74043 * 306.39272 * 5 4 2 15 15 C 1.53187 * 108.77636 * 53.60631 * 14 5 4 16 16 C 1.53034 * 109.31477 * 305.36581 * 15 14 5 17 17 H 1.08999 * 109.45228 * 301.35379 * 16 15 14 18 18 N 1.46500 * 109.46335 * 181.38697 * 16 15 14 19 19 C 1.34770 * 120.00064 * 84.92804 * 18 16 15 20 20 O 1.21281 * 120.00277 * 0.02562 * 19 18 16 21 21 C 1.50702 * 119.99994 * 180.02562 * 19 18 16 22 22 H 1.09006 * 109.67522 * 300.51795 * 21 19 18 23 23 C 1.53403 * 109.68298 * 180.02562 * 21 19 18 24 24 C 1.53125 * 109.44437 * 190.63326 * 23 21 19 25 25 C 1.53352 * 109.51763 * 70.01796 * 24 23 21 26 26 C 1.50860 * 108.42002 * 310.00611 * 25 24 23 27 27 N 1.33576 * 128.03656 * 196.78635 * 26 25 24 28 28 C 1.30752 * 109.14476 * 179.84443 * 27 26 25 29 29 N 1.35305 * 108.76721 * 0.02562 * 28 27 26 30 30 H 0.97000 * 126.49793 * 180.02562 * 29 28 27 31 31 C 1.35026 * 123.98100 * 16.67086 * 26 25 24 32 32 H 1.09002 * 109.46827 * 299.91888 * 1 2 3 33 33 H 1.08997 * 109.47455 * 59.91920 * 1 2 3 34 34 H 1.09003 * 109.47222 * 179.97438 * 1 2 3 35 35 H 1.09008 * 109.47472 * 180.08234 * 3 2 1 36 36 H 1.09001 * 109.47057 * 300.07916 * 3 2 1 37 37 H 1.08997 * 109.47370 * 60.08517 * 3 2 1 38 38 H 1.08999 * 109.59041 * 54.46483 * 4 2 1 39 39 H 1.08993 * 109.59079 * 174.89685 * 4 2 1 40 40 H 0.97000 * 120.00072 * 180.02562 * 9 8 6 41 41 H 1.09003 * 109.58719 * 173.39735 * 14 5 4 42 42 H 1.09004 * 109.58317 * 293.81497 * 14 5 4 43 43 H 1.09002 * 109.49593 * 185.41452 * 15 14 5 44 44 H 1.09000 * 109.49981 * 65.32074 * 15 14 5 45 45 H 0.96996 * 119.99801 * 264.93529 * 18 16 15 46 46 H 1.08999 * 109.47690 * 70.63570 * 23 21 19 47 47 H 1.09005 * 109.47341 * 310.62709 * 23 21 19 48 48 H 1.08998 * 109.45805 * 190.02852 * 24 23 21 49 49 H 1.08999 * 109.45921 * 310.00472 * 24 23 21 50 50 H 1.09000 * 109.67845 * 69.75098 * 25 24 23 51 51 H 1.08999 * 109.67462 * 190.28249 * 25 24 23 52 52 H 1.08002 * 125.61165 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0412 1.4420 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 1.6515 -2.1381 -1.1695 6 6 0.9639 -2.7314 -2.1944 7 1 0.3080 -3.5655 -1.9930 8 6 1.1098 -2.2607 -3.4921 9 7 2.1345 -1.4957 -3.8034 10 14 -0.1483 -2.7131 -4.7967 11 1 -1.1958 -3.5774 -4.1956 12 1 -0.7731 -1.4768 -5.3317 13 1 0.5239 -3.4453 -5.8999 14 6 2.0140 -2.9039 0.0308 15 6 1.5030 -2.1557 1.2660 16 6 2.0408 -0.7230 1.2484 17 1 3.1305 -0.7445 1.2351 18 7 1.5811 -0.0143 2.4453 19 6 2.2698 -0.1227 3.5987 20 8 3.2703 -0.8065 3.6457 21 6 1.7966 0.6059 4.8301 22 1 1.7689 1.6779 4.6343 23 6 2.7488 0.3190 5.9981 24 6 2.1295 0.8361 7.2995 25 6 0.9271 -0.0376 7.6773 26 6 0.0325 -0.1655 6.4694 27 7 -1.2418 -0.5639 6.4274 28 6 -1.6600 -0.5334 5.1890 29 7 -0.6476 -0.1090 4.3979 30 1 -0.6778 0.0084 3.4355 31 6 0.4210 0.1223 5.2087 32 1 -0.3633 0.5126 0.8907 33 1 -0.3634 0.5151 -0.8892 34 1 -0.3634 -1.0277 -0.0005 35 1 3.1313 1.4411 -0.0015 36 1 1.6772 1.9566 -0.8893 37 1 1.6796 1.9558 0.8907 38 1 1.6007 -0.2731 -2.1389 39 1 3.1274 -0.6462 -1.2980 40 1 2.2363 -1.1665 -4.7102 41 1 1.5554 -3.8918 -0.0137 42 1 3.0980 -3.0042 0.0867 43 1 1.8481 -2.6627 2.1671 44 1 0.4133 -2.1354 1.2542 45 1 0.7811 0.5328 2.4077 46 1 3.7001 0.8216 5.8234 47 1 2.9145 -0.7556 6.0763 48 1 2.8723 0.7958 8.0962 49 1 1.8008 1.8661 7.1611 50 1 1.2728 -1.0247 7.9844 51 1 0.3764 0.4292 8.4939 52 1 -2.6505 -0.8026 4.8529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941022899.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:46 Heat of formation + Delta-G solvation = 9.929403 kcal Electronic energy + Delta-G solvation = -32599.123620 eV Core-core repulsion = 28598.426073 eV Total energy + Delta-G solvation = -4000.697547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.38933 -41.40698 -39.76975 -37.31858 -36.31148 -34.69550 -34.02569 -33.70844 -31.55904 -30.75737 -29.86131 -28.20030 -27.64234 -27.03820 -25.28262 -23.88510 -23.17818 -22.49638 -22.34012 -21.70785 -19.88502 -19.76528 -19.09678 -18.69423 -17.87923 -17.13635 -16.77793 -16.61681 -15.91717 -15.76669 -15.63511 -15.42699 -15.28219 -15.16357 -14.98861 -14.71576 -14.61203 -14.41393 -14.04707 -13.88058 -13.48454 -13.29525 -13.10131 -12.97669 -12.91881 -12.78199 -12.66720 -12.44027 -12.37692 -12.16632 -11.93410 -11.86948 -11.82765 -11.80643 -11.69541 -11.39289 -11.30421 -11.13595 -10.85146 -10.68613 -10.56044 -10.08600 -9.15451 -8.70544 -7.88409 -5.33110 0.95490 1.45122 1.48409 1.52589 1.57754 2.00154 2.11501 2.21350 2.50144 3.26930 3.48293 3.52143 3.60755 3.66855 3.77405 3.84302 3.93665 4.04837 4.11473 4.28121 4.30404 4.36052 4.39121 4.44212 4.53558 4.55318 4.59604 4.71844 4.75626 4.81990 4.90541 4.92422 4.99393 5.01563 5.02476 5.06306 5.15372 5.18563 5.20585 5.25396 5.29172 5.29695 5.40127 5.44583 5.49400 5.59242 5.67907 5.72464 5.76880 6.37078 6.40214 6.44643 7.09383 7.13364 7.13869 7.83011 8.35949 9.18282 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.002952 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.240803 B = 9481.637860 C =10009.490944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.196 3.804 5 N -0.601 5.601 6 C -0.256 4.256 7 H 0.066 0.934 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.297 1.297 14 C 0.144 3.856 15 C -0.125 4.125 16 C 0.176 3.824 17 H 0.054 0.946 18 N -0.709 5.709 19 C 0.514 3.486 20 O -0.568 6.568 21 C -0.019 4.019 22 H 0.136 0.864 23 C -0.095 4.095 24 C -0.107 4.107 25 C -0.038 4.038 26 C -0.001 4.001 27 N -0.524 5.524 28 C 0.191 3.809 29 N -0.554 5.554 30 H 0.425 0.575 31 C -0.034 4.034 32 H 0.069 0.931 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.064 0.936 39 H -0.016 1.016 40 H 0.249 0.751 41 H 0.056 0.944 42 H 0.002 0.998 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.402 0.598 46 H 0.085 0.915 47 H 0.055 0.945 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.728 10.068 19.924 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.069 3.931 5 N -0.324 5.324 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.225 1.225 14 C 0.018 3.982 15 C -0.165 4.165 16 C 0.071 3.929 17 H 0.073 0.927 18 N -0.361 5.361 19 C 0.301 3.699 20 O -0.446 6.446 21 C -0.041 4.041 22 H 0.154 0.846 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.077 4.077 26 C -0.131 4.131 27 N -0.243 5.243 28 C -0.092 4.092 29 N -0.158 5.158 30 H 0.265 0.735 31 C -0.150 4.150 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.002 0.998 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.020 0.980 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.239 0.761 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.103 0.897 52 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.459 9.375 20.508 23.201 hybrid contribution -0.093 -0.197 -2.663 2.672 sum -5.552 9.178 17.845 20.821 Atomic orbital electron populations 1.21686 0.93127 1.01966 1.01087 1.21342 0.97401 0.95665 0.94533 1.21733 1.00356 0.94349 1.02321 1.20607 0.94107 0.83415 0.94951 1.44268 1.65136 1.06524 1.16462 1.19475 1.17673 1.14918 0.86532 0.91618 1.25717 0.98596 1.01047 0.98796 1.70187 1.29061 1.39894 1.18835 0.85283 0.79160 0.77370 0.79081 1.19096 1.21456 1.22480 1.20941 0.95776 0.94754 0.86778 1.22209 1.01328 0.95588 0.97365 1.20613 0.97793 0.90998 0.83465 0.92743 1.46174 1.29805 1.50454 1.09708 1.21054 0.83018 0.80954 0.84879 1.90713 1.27250 1.41499 1.85162 1.19973 0.89594 1.01443 0.93106 0.84648 1.21429 0.97383 1.02088 0.92470 1.21590 0.96682 0.99518 0.96635 1.20069 0.93738 1.00831 0.93018 1.20926 0.92392 1.04934 0.94815 1.70021 1.11855 1.21412 1.21036 1.25777 0.96219 1.01865 0.85321 1.43077 1.10636 1.50931 1.11123 0.73479 1.20509 0.90642 1.12016 0.91853 0.91216 0.93446 0.92756 0.93973 0.92498 0.90544 0.91728 0.99788 0.94132 0.92563 0.98003 0.92992 0.90712 0.76081 0.89662 0.92621 0.88706 0.90211 0.91083 0.89735 0.74159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 7.83 71.98 0.56 -2.83 16 2 C -0.09 -2.81 0.56 -52.11 -0.03 -2.84 16 3 C -0.13 -3.53 8.31 71.98 0.60 -2.93 16 4 C 0.20 8.86 3.99 86.36 0.34 9.21 16 5 N -0.60 -28.86 2.43 -699.11 -1.70 -30.56 16 6 C -0.26 -13.48 9.59 84.03 0.81 -12.68 16 7 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 8 C -0.05 -2.48 4.91 84.86 0.42 -2.06 16 9 N -0.93 -53.68 11.19 21.65 0.24 -53.44 16 10 Si 0.96 43.44 29.59 68.60 2.03 45.47 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 13 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.14 6.06 6.52 86.36 0.56 6.62 16 15 C -0.12 -4.22 5.31 30.67 0.16 -4.06 16 16 C 0.18 5.51 1.57 45.02 0.07 5.58 16 17 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 18 N -0.71 -16.20 3.83 -442.42 -1.70 -17.89 16 19 C 0.51 12.96 7.09 87.66 0.62 13.58 16 20 O -0.57 -19.52 15.49 -3.03 -0.05 -19.57 16 21 C -0.02 -0.34 2.90 -12.17 -0.04 -0.38 16 22 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 23 C -0.10 -1.67 4.68 30.77 0.14 -1.53 16 24 C -0.11 -1.35 5.90 30.75 0.18 -1.17 16 25 C -0.04 -0.65 6.30 30.02 0.19 -0.46 16 26 C 0.00 -0.02 6.98 41.60 0.29 0.28 16 27 N -0.52 -12.24 11.25 -187.90 -2.11 -14.35 16 28 C 0.19 3.29 13.05 180.11 2.35 5.63 16 29 N -0.55 -8.96 5.90 -186.46 -1.10 -10.06 16 30 H 0.42 5.26 6.86 -92.71 -0.64 4.62 16 31 C -0.03 -0.65 6.32 41.14 0.26 -0.39 16 32 H 0.07 1.28 6.58 -2.39 -0.02 1.26 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.74 5.97 -2.39 -0.01 1.73 16 35 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.08 1.55 7.36 -2.39 -0.02 1.53 16 38 H 0.06 3.32 6.04 -2.39 -0.01 3.30 16 39 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.25 13.93 8.31 -92.71 -0.77 13.15 16 41 H 0.06 2.32 7.93 -2.39 -0.02 2.31 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 2.35 6.33 -2.39 -0.02 2.33 16 45 H 0.40 6.69 4.77 -92.71 -0.44 6.24 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.05 1.26 7.73 -2.38 -0.02 1.24 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 0.84 8.11 -2.39 -0.02 0.82 16 50 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.24 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -71.96 391.87 2.97 -68.99 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.14 Total: 21.83 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.50 Total: 9.58 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -6.37 Total: -126.30 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.96 2.97 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022899.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.918 kcal (2) G-P(sol) polarization free energy of solvation -71.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds