Wall clock time and date at job start Wed Apr 1 2020 04:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.52709 * 2 1 4 4 C 1.53191 * 109.49579 * 239.92060 * 2 1 3 5 5 N 1.46926 * 108.77620 * 185.41284 * 4 2 1 6 6 C 1.36937 * 120.63242 * 233.63060 * 5 4 2 7 7 H 1.08004 * 119.99695 * 151.80649 * 6 5 4 8 8 C 1.38814 * 120.00231 * 331.80747 * 6 5 4 9 9 N 1.31621 * 119.99665 * 343.08908 * 8 6 5 10 10 Si 1.86797 * 119.99903 * 163.08337 * 8 6 5 11 11 H 1.48498 * 109.47126 * 90.00338 * 10 8 6 12 12 H 1.48503 * 109.46915 * 209.99892 * 10 8 6 13 13 H 1.48499 * 109.47204 * 330.00122 * 10 8 6 14 14 C 1.46930 * 118.73892 * 53.61094 * 5 4 2 15 15 C 1.53193 * 108.77032 * 306.39256 * 14 5 4 16 16 C 1.53032 * 109.31614 * 54.63277 * 15 14 5 17 17 H 1.09010 * 109.46141 * 58.64298 * 16 15 14 18 18 N 1.46499 * 109.46097 * 178.61035 * 16 15 14 19 19 C 1.34780 * 120.00189 * 275.00069 * 18 16 15 20 20 O 1.21275 * 120.00181 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99698 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.68111 * 300.51586 * 21 19 18 23 23 C 1.53400 * 109.68065 * 180.02562 * 21 19 18 24 24 C 1.53119 * 109.44733 * 190.63502 * 23 21 19 25 25 C 1.53360 * 109.52455 * 70.01957 * 24 23 21 26 26 C 1.50859 * 108.40903 * 310.00735 * 25 24 23 27 27 N 1.33572 * 128.03558 * 196.77687 * 26 25 24 28 28 C 1.30752 * 109.15485 * 179.84626 * 27 26 25 29 29 N 1.35316 * 108.76287 * 0.02562 * 28 27 26 30 30 H 0.96999 * 126.49953 * 180.02562 * 29 28 27 31 31 C 1.35031 * 123.99153 * 16.67367 * 26 25 24 32 32 H 1.09000 * 109.47326 * 299.92034 * 1 2 3 33 33 H 1.09010 * 109.47075 * 59.91603 * 1 2 3 34 34 H 1.09000 * 109.47331 * 179.91744 * 1 2 3 35 35 H 1.08996 * 109.47259 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47175 * 300.08549 * 3 2 1 37 37 H 1.09001 * 109.46833 * 60.08235 * 3 2 1 38 38 H 1.09007 * 109.59082 * 65.62886 * 4 2 1 39 39 H 1.08994 * 109.70597 * 305.27126 * 4 2 1 40 40 H 0.97001 * 119.99525 * 180.02562 * 9 8 6 41 41 H 1.08994 * 109.58827 * 186.60871 * 14 5 4 42 42 H 1.08997 * 109.70034 * 66.24680 * 14 5 4 43 43 H 1.08998 * 109.49946 * 294.67652 * 15 14 5 44 44 H 1.09005 * 109.52130 * 174.60305 * 15 14 5 45 45 H 0.97005 * 120.00111 * 95.00564 * 18 16 15 46 46 H 1.09001 * 109.47573 * 310.62451 * 23 21 19 47 47 H 1.09005 * 109.48020 * 70.63622 * 23 21 19 48 48 H 1.08996 * 109.46075 * 190.02911 * 24 23 21 49 49 H 1.09004 * 109.45959 * 309.99357 * 24 23 21 50 50 H 1.09000 * 109.65917 * 190.28945 * 25 24 23 51 51 H 1.08995 * 109.69207 * 69.75141 * 25 24 23 52 52 H 1.07999 * 125.62428 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 3.5045 -0.8291 -1.1697 6 6 4.2935 -0.3785 -2.1942 7 1 5.2959 -0.0313 -1.9912 8 6 3.8050 -0.3678 -3.4935 9 7 2.7419 -1.0796 -3.8026 10 14 4.6562 0.6569 -4.8029 11 1 5.7031 -0.1599 -5.4677 12 1 3.6594 1.0994 -5.8108 13 1 5.2829 1.8459 -4.1713 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6951 1.2659 16 6 2.0408 -0.7231 1.2482 17 1 1.6966 -1.7574 1.2349 18 7 1.5266 -0.0531 2.4452 19 6 1.3972 -0.7388 3.5983 20 8 1.7069 -1.9104 3.6452 21 6 0.8676 -0.0496 4.8294 22 1 1.5145 0.7890 5.0876 23 6 0.8196 -1.0430 5.9973 24 6 0.0417 -0.4237 7.1617 25 6 -1.4440 -0.3295 6.7931 26 6 -1.5582 0.3239 5.4382 27 7 -2.6392 0.8729 4.8777 28 6 -2.3224 1.3342 3.6960 29 7 -1.0115 1.0867 3.4693 30 1 -0.5096 1.3205 2.6729 31 6 -0.5308 0.4476 4.5707 32 1 -0.3634 0.5126 0.8907 33 1 -0.3634 0.5152 -0.8893 34 1 -0.3634 -1.0276 -0.0015 35 1 3.1313 1.4410 -0.0005 36 1 1.6773 1.9567 -0.8892 37 1 1.6797 1.9557 0.8907 38 1 1.7637 -0.1579 -2.1390 39 1 1.6053 -1.7214 -1.3006 40 1 2.4008 -1.0724 -4.7107 41 1 5.1895 -1.3246 -0.0138 42 1 3.8396 -2.4824 0.0878 43 1 3.9159 0.3387 1.2541 44 1 3.9334 -1.1893 2.1672 45 1 1.2791 0.8841 2.4079 46 1 0.3238 -1.9587 5.6753 47 1 1.8348 -1.2737 6.3203 48 1 0.1570 -1.0474 8.0481 49 1 0.4290 0.5743 7.3672 50 1 -1.9687 0.2715 7.5358 51 1 -1.8773 -1.3290 6.7564 52 1 -2.9961 1.8302 3.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941022900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:51 Heat of formation + Delta-G solvation = 28.172427 kcal Electronic energy + Delta-G solvation = -32607.124786 eV Core-core repulsion = 28607.218316 eV Total energy + Delta-G solvation = -3999.906470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61249 -40.16903 -38.44934 -36.48545 -34.75133 -33.56108 -32.87428 -32.02981 -30.46957 -29.38184 -29.08353 -26.95118 -26.12450 -25.48405 -24.15152 -22.54597 -22.38546 -21.62983 -20.72926 -20.54478 -19.13175 -18.55227 -17.90863 -17.26848 -16.61049 -15.93754 -15.54762 -15.00197 -14.98365 -14.81127 -14.55286 -14.24407 -13.97915 -13.81291 -13.73709 -13.48113 -13.43867 -13.15464 -12.92952 -12.64188 -12.42081 -12.19951 -11.84293 -11.63036 -11.46377 -11.43830 -11.15861 -11.14709 -11.10300 -10.97578 -10.76313 -10.69386 -10.39260 -10.29859 -10.19990 -10.06994 -10.06173 -9.89045 -9.73554 -9.49421 -8.83593 -8.53125 -8.36392 -6.74754 -5.86886 -3.29005 1.74340 2.55477 2.85055 2.90673 3.20348 3.31621 3.39254 3.40497 4.21413 4.35546 4.42529 4.52754 4.59285 4.78190 4.95837 5.02183 5.08772 5.14813 5.16021 5.24022 5.28641 5.39383 5.42502 5.46045 5.66244 5.71242 5.74901 5.77764 5.80932 5.85836 5.88945 5.95518 6.01519 6.07348 6.12702 6.15665 6.25636 6.32712 6.37512 6.45566 6.52351 6.57841 6.72516 6.79274 6.87087 6.92999 7.10943 7.20660 7.44943 7.55762 7.72805 7.85788 8.19902 8.36936 9.13208 9.76234 10.33215 11.21910 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002912 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.740162 B = 9614.502902 C =10409.945834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.099 4.099 3 C -0.127 4.127 4 C 0.188 3.812 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.724 5.724 19 C 0.514 3.486 20 O -0.527 6.527 21 C -0.030 4.030 22 H 0.107 0.893 23 C -0.095 4.095 24 C -0.118 4.118 25 C -0.036 4.036 26 C 0.018 3.982 27 N -0.486 5.486 28 C 0.186 3.814 29 N -0.559 5.559 30 H 0.416 0.584 31 C -0.024 4.024 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.024 0.976 38 H 0.093 0.907 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.056 0.944 42 H 0.020 0.980 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.385 0.615 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.077 0.923 52 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 6.173 18.038 20.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.101 4.101 3 C -0.184 4.184 4 C 0.061 3.939 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.402 6.402 21 C -0.052 4.052 22 H 0.125 0.875 23 C -0.134 4.134 24 C -0.156 4.156 25 C -0.074 4.074 26 C -0.113 4.113 27 N -0.205 5.205 28 C -0.097 4.097 29 N -0.163 5.163 30 H 0.257 0.743 31 C -0.141 4.141 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.111 0.889 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.038 0.962 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.220 0.780 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.085 0.915 50 H 0.096 0.904 51 H 0.095 0.905 52 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.800 5.328 18.258 20.557 hybrid contribution 1.179 1.206 -1.803 2.468 sum -6.621 6.534 16.455 18.903 Atomic orbital electron populations 1.21764 0.95603 1.01495 0.99949 1.21598 0.94195 0.96868 0.97445 1.21761 1.02965 0.94583 0.99136 1.20797 0.83240 0.96785 0.93100 1.44033 1.01558 1.69184 1.16276 1.19136 0.97967 1.35347 0.85675 0.91708 1.25036 0.98472 0.98956 0.96988 1.70019 1.25636 1.40155 1.18785 0.86341 0.78724 0.80358 0.81616 1.21371 1.21585 1.20504 1.20875 0.96717 0.94293 0.86126 1.22441 0.94582 1.01609 0.99595 1.21058 0.94053 0.96831 0.82149 0.89937 1.46490 1.66400 1.13729 1.10991 1.20445 0.78010 0.87368 0.84306 1.90715 1.49345 1.15798 1.84353 1.19968 0.90712 0.99470 0.95094 0.87543 1.21419 1.01842 0.97674 0.92421 1.21637 0.94380 1.01544 0.97997 1.19978 0.96639 0.99953 0.90803 1.20502 0.88623 1.04203 0.97947 1.70008 1.28977 1.14724 1.06747 1.25083 0.83531 1.04529 0.96576 1.43185 1.11573 1.45140 1.16407 0.74347 1.20483 0.96956 1.06410 0.90202 0.95162 0.92182 0.92744 0.90788 0.92668 0.95730 0.88857 0.96191 0.93583 0.92510 0.96221 0.91856 0.92691 0.78012 0.90137 0.90258 0.90524 0.91523 0.90372 0.90462 0.77373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.84 8.31 37.16 0.31 -1.53 16 2 C -0.10 -1.62 0.56 -154.39 -0.09 -1.71 16 3 C -0.13 -1.95 7.83 37.16 0.29 -1.66 16 4 C 0.19 4.10 3.98 -3.71 -0.01 4.09 16 5 N -0.59 -13.76 2.43 -172.32 -0.42 -14.18 16 6 C -0.25 -6.53 9.58 -15.06 -0.14 -6.67 16 7 H 0.07 1.67 7.89 -52.48 -0.41 1.25 16 8 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 9 N -0.90 -25.08 11.20 55.49 0.62 -24.46 16 10 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.15 3.00 6.52 -3.71 -0.02 2.98 16 15 C -0.14 -2.43 5.31 -26.61 -0.14 -2.57 16 16 C 0.16 2.62 1.57 -67.90 -0.11 2.51 16 17 H 0.08 1.56 7.58 -51.92 -0.39 1.17 16 18 N -0.72 -9.31 3.83 -53.77 -0.21 -9.51 16 19 C 0.51 7.02 7.10 -10.98 -0.08 6.94 16 20 O -0.53 -9.19 15.49 5.56 0.09 -9.11 16 21 C -0.03 -0.31 2.90 -92.74 -0.27 -0.58 16 22 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 23 C -0.10 -0.93 4.68 -26.46 -0.12 -1.05 16 24 C -0.12 -0.90 5.90 -26.48 -0.16 -1.06 16 25 C -0.04 -0.33 6.30 -27.62 -0.17 -0.50 16 26 C 0.02 0.21 6.98 -82.90 -0.58 -0.37 16 27 N -0.49 -6.12 11.25 -10.74 -0.12 -6.24 16 28 C 0.19 1.86 13.05 -89.92 -1.17 0.69 16 29 N -0.56 -5.46 5.91 -10.28 -0.06 -5.52 16 30 H 0.42 3.51 5.22 -40.82 -0.21 3.30 16 31 C -0.02 -0.26 6.32 -81.85 -0.52 -0.78 16 32 H 0.03 0.34 5.72 -51.93 -0.30 0.04 16 33 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.02 0.29 6.58 -51.93 -0.34 -0.05 16 38 H 0.09 2.30 6.06 -51.93 -0.31 1.98 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 41 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.39 4.10 4.78 -40.82 -0.20 3.91 16 46 H 0.08 0.94 7.73 -51.93 -0.40 0.53 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 50 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 388.64 15.07 5.86 5.86 Total: -1.00 -31.40 388.64 -10.60 -41.99 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.25 Total: 6.58 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -3.07 Total: -1.25 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.18 Total: -59.92 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.40 -10.60 -41.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.164 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds