Wall clock time and date at job start Wed Apr 1 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.52709 * 2 1 4 4 C 1.53191 * 109.49579 * 239.92060 * 2 1 3 5 5 N 1.46926 * 108.77620 * 185.41284 * 4 2 1 6 6 C 1.36937 * 120.63242 * 233.63060 * 5 4 2 7 7 H 1.08004 * 119.99695 * 151.80649 * 6 5 4 8 8 C 1.38814 * 120.00231 * 331.80747 * 6 5 4 9 9 N 1.31621 * 119.99665 * 343.08908 * 8 6 5 10 10 Si 1.86797 * 119.99903 * 163.08337 * 8 6 5 11 11 H 1.48498 * 109.47126 * 90.00338 * 10 8 6 12 12 H 1.48503 * 109.46915 * 209.99892 * 10 8 6 13 13 H 1.48499 * 109.47204 * 330.00122 * 10 8 6 14 14 C 1.46930 * 118.73892 * 53.61094 * 5 4 2 15 15 C 1.53193 * 108.77032 * 306.39256 * 14 5 4 16 16 C 1.53032 * 109.31614 * 54.63277 * 15 14 5 17 17 H 1.09010 * 109.46141 * 58.64298 * 16 15 14 18 18 N 1.46499 * 109.46097 * 178.61035 * 16 15 14 19 19 C 1.34780 * 120.00189 * 275.00069 * 18 16 15 20 20 O 1.21275 * 120.00181 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99698 * 180.02562 * 19 18 16 22 22 H 1.09005 * 109.68111 * 300.51586 * 21 19 18 23 23 C 1.53400 * 109.68065 * 180.02562 * 21 19 18 24 24 C 1.53119 * 109.44733 * 190.63502 * 23 21 19 25 25 C 1.53360 * 109.52455 * 70.01957 * 24 23 21 26 26 C 1.50859 * 108.40903 * 310.00735 * 25 24 23 27 27 N 1.33572 * 128.03558 * 196.77687 * 26 25 24 28 28 C 1.30752 * 109.15485 * 179.84626 * 27 26 25 29 29 N 1.35316 * 108.76287 * 0.02562 * 28 27 26 30 30 H 0.96999 * 126.49953 * 180.02562 * 29 28 27 31 31 C 1.35031 * 123.99153 * 16.67367 * 26 25 24 32 32 H 1.09000 * 109.47326 * 299.92034 * 1 2 3 33 33 H 1.09010 * 109.47075 * 59.91603 * 1 2 3 34 34 H 1.09000 * 109.47331 * 179.91744 * 1 2 3 35 35 H 1.08996 * 109.47259 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.47175 * 300.08549 * 3 2 1 37 37 H 1.09001 * 109.46833 * 60.08235 * 3 2 1 38 38 H 1.09007 * 109.59082 * 65.62886 * 4 2 1 39 39 H 1.08994 * 109.70597 * 305.27126 * 4 2 1 40 40 H 0.97001 * 119.99525 * 180.02562 * 9 8 6 41 41 H 1.08994 * 109.58827 * 186.60871 * 14 5 4 42 42 H 1.08997 * 109.70034 * 66.24680 * 14 5 4 43 43 H 1.08998 * 109.49946 * 294.67652 * 15 14 5 44 44 H 1.09005 * 109.52130 * 174.60305 * 15 14 5 45 45 H 0.97005 * 120.00111 * 95.00564 * 18 16 15 46 46 H 1.09001 * 109.47573 * 310.62451 * 23 21 19 47 47 H 1.09005 * 109.48020 * 70.63622 * 23 21 19 48 48 H 1.08996 * 109.46075 * 190.02911 * 24 23 21 49 49 H 1.09004 * 109.45959 * 309.99357 * 24 23 21 50 50 H 1.09000 * 109.65917 * 190.28945 * 25 24 23 51 51 H 1.08995 * 109.69207 * 69.75141 * 25 24 23 52 52 H 1.07999 * 125.62428 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0412 -0.7238 -1.2496 5 7 3.5045 -0.8291 -1.1697 6 6 4.2935 -0.3785 -2.1942 7 1 5.2959 -0.0313 -1.9912 8 6 3.8050 -0.3678 -3.4935 9 7 2.7419 -1.0796 -3.8026 10 14 4.6562 0.6569 -4.8029 11 1 5.7031 -0.1599 -5.4677 12 1 3.6594 1.0994 -5.8108 13 1 5.2829 1.8459 -4.1713 14 6 4.1053 -1.4268 0.0306 15 6 3.5708 -0.6951 1.2659 16 6 2.0408 -0.7231 1.2482 17 1 1.6966 -1.7574 1.2349 18 7 1.5266 -0.0531 2.4452 19 6 1.3972 -0.7388 3.5983 20 8 1.7069 -1.9104 3.6452 21 6 0.8676 -0.0496 4.8294 22 1 1.5145 0.7890 5.0876 23 6 0.8196 -1.0430 5.9973 24 6 0.0417 -0.4237 7.1617 25 6 -1.4440 -0.3295 6.7931 26 6 -1.5582 0.3239 5.4382 27 7 -2.6392 0.8729 4.8777 28 6 -2.3224 1.3342 3.6960 29 7 -1.0115 1.0867 3.4693 30 1 -0.5096 1.3205 2.6729 31 6 -0.5308 0.4476 4.5707 32 1 -0.3634 0.5126 0.8907 33 1 -0.3634 0.5152 -0.8893 34 1 -0.3634 -1.0276 -0.0015 35 1 3.1313 1.4410 -0.0005 36 1 1.6773 1.9567 -0.8892 37 1 1.6797 1.9557 0.8907 38 1 1.7637 -0.1579 -2.1390 39 1 1.6053 -1.7214 -1.3006 40 1 2.4008 -1.0724 -4.7107 41 1 5.1895 -1.3246 -0.0138 42 1 3.8396 -2.4824 0.0878 43 1 3.9159 0.3387 1.2541 44 1 3.9334 -1.1893 2.1672 45 1 1.2791 0.8841 2.4079 46 1 0.3238 -1.9587 5.6753 47 1 1.8348 -1.2737 6.3203 48 1 0.1570 -1.0474 8.0481 49 1 0.4290 0.5743 7.3672 50 1 -1.9687 0.2715 7.5358 51 1 -1.8773 -1.3290 6.7564 52 1 -2.9961 1.8302 3.0130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941022900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:50 Heat of formation + Delta-G solvation = 10.651670 kcal Electronic energy + Delta-G solvation = -32607.884543 eV Core-core repulsion = 28607.218316 eV Total energy + Delta-G solvation = -4000.666227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.40704 -41.40999 -39.78163 -37.32525 -36.31735 -34.66968 -34.10647 -33.68778 -31.54048 -30.77101 -29.86764 -28.21769 -27.69069 -27.04317 -25.28300 -23.88031 -23.19337 -22.51223 -22.33931 -21.71083 -19.90730 -19.79895 -19.05578 -18.71254 -17.92613 -17.16587 -16.79895 -16.49484 -15.96892 -15.76155 -15.64373 -15.41392 -15.33193 -15.21530 -15.01353 -14.74595 -14.56221 -14.32815 -14.17698 -13.85355 -13.50880 -13.29107 -13.11545 -12.98048 -12.94196 -12.77511 -12.63792 -12.46879 -12.37398 -12.16901 -11.96089 -11.86552 -11.83256 -11.81220 -11.71715 -11.39808 -11.32552 -11.13180 -10.86356 -10.69874 -10.55293 -10.08863 -9.16453 -8.69225 -7.88136 -5.33160 0.94324 1.46308 1.48482 1.51460 1.57348 1.98262 2.09776 2.20043 2.50668 3.27337 3.47708 3.50465 3.61039 3.64998 3.76271 3.83615 3.92381 4.00750 4.11247 4.29180 4.29479 4.35181 4.38925 4.43315 4.52354 4.53166 4.60557 4.67432 4.72126 4.79467 4.88405 4.94042 4.98880 5.00860 5.02069 5.05077 5.14331 5.16197 5.19859 5.26081 5.28228 5.29266 5.38192 5.43943 5.48826 5.59209 5.67738 5.71602 5.75971 6.36929 6.39299 6.42809 7.08227 7.12116 7.14246 7.83534 8.36717 9.18589 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021357 B = 0.002912 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.740162 B = 9614.502902 C =10409.945834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.087 4.087 3 C -0.122 4.122 4 C 0.196 3.804 5 N -0.602 5.602 6 C -0.257 4.257 7 H 0.067 0.933 8 C -0.046 4.046 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.268 1.268 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.175 3.825 17 H 0.051 0.949 18 N -0.710 5.710 19 C 0.514 3.486 20 O -0.567 6.567 21 C -0.020 4.020 22 H 0.136 0.864 23 C -0.095 4.095 24 C -0.107 4.107 25 C -0.038 4.038 26 C 0.000 4.000 27 N -0.523 5.523 28 C 0.191 3.809 29 N -0.555 5.555 30 H 0.422 0.578 31 C -0.035 4.035 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.065 0.935 39 H -0.017 1.017 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.001 0.999 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.401 0.599 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.095 0.905 49 H 0.079 0.921 50 H 0.085 0.915 51 H 0.071 0.929 52 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 8.829 19.922 22.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C -0.179 4.179 4 C 0.070 3.930 5 N -0.324 5.324 6 C -0.387 4.387 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.580 5.580 10 Si 0.791 3.209 11 H -0.217 1.217 12 H -0.220 1.220 13 H -0.193 1.193 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.070 3.930 17 H 0.069 0.931 18 N -0.362 5.362 19 C 0.301 3.699 20 O -0.445 6.445 21 C -0.042 4.042 22 H 0.153 0.847 23 C -0.133 4.133 24 C -0.144 4.144 25 C -0.076 4.076 26 C -0.130 4.130 27 N -0.242 5.242 28 C -0.092 4.092 29 N -0.160 5.160 30 H 0.264 0.736 31 C -0.151 4.151 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.001 0.999 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.238 0.762 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.103 0.897 51 H 0.089 0.911 52 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.921 8.018 20.176 23.111 hybrid contribution 1.201 0.288 -2.383 2.684 sum -6.720 8.305 17.793 20.754 Atomic orbital electron populations 1.21712 0.93545 1.01203 1.01860 1.21346 0.95765 0.97142 0.94706 1.21690 1.01641 0.93477 1.01085 1.20575 0.82593 0.94995 0.94831 1.44252 1.02067 1.69517 1.16597 1.19440 0.98269 1.34532 0.86440 0.91565 1.25738 0.99369 1.00188 0.98875 1.70182 1.27248 1.41825 1.18789 0.85350 0.77426 0.79090 0.79009 1.21672 1.21956 1.19251 1.20956 0.96913 0.93686 0.86736 1.22239 0.95108 1.01693 0.97675 1.20627 0.93427 0.95533 0.83398 0.93072 1.46194 1.65994 1.14277 1.09780 1.21058 0.76982 0.86877 0.85012 1.90710 1.51052 1.17784 1.84996 1.19985 0.90830 1.00078 0.93288 0.84669 1.21427 1.02286 0.96678 0.92953 1.21592 0.92793 1.02444 0.97607 1.20072 0.97892 0.99533 0.90152 1.20933 0.88686 1.04316 0.99035 1.70018 1.29812 1.16169 1.08188 1.25798 0.83847 1.03241 0.96278 1.43159 1.11633 1.44905 1.16306 0.73614 1.20531 0.96965 1.06963 0.90681 0.91627 0.91854 0.94236 0.92784 0.93269 0.91241 0.91718 0.99910 0.94147 0.92359 0.98064 0.90562 0.92169 0.76167 0.92622 0.89614 0.88674 0.90215 0.89686 0.91052 0.74080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.37 8.31 71.98 0.60 -2.78 16 2 C -0.09 -2.82 0.56 -52.11 -0.03 -2.85 16 3 C -0.12 -3.45 7.83 71.98 0.56 -2.89 16 4 C 0.20 8.92 3.98 86.36 0.34 9.26 16 5 N -0.60 -28.89 2.43 -699.09 -1.70 -30.59 16 6 C -0.26 -13.51 9.58 84.03 0.81 -12.71 16 7 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 8 C -0.05 -2.49 4.92 84.86 0.42 -2.07 16 9 N -0.93 -53.76 11.20 21.65 0.24 -53.52 16 10 Si 0.96 43.38 29.59 68.60 2.03 45.41 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 14 C 0.14 5.99 6.52 86.36 0.56 6.56 16 15 C -0.13 -4.26 5.31 30.67 0.16 -4.09 16 16 C 0.17 5.53 1.57 45.01 0.07 5.60 16 17 H 0.05 1.98 7.58 -2.38 -0.02 1.97 16 18 N -0.71 -16.56 3.83 -442.42 -1.69 -18.26 16 19 C 0.51 13.12 7.10 87.66 0.62 13.74 16 20 O -0.57 -19.58 15.49 -3.01 -0.05 -19.63 16 21 C -0.02 -0.36 2.90 -12.17 -0.04 -0.39 16 22 H 0.14 1.74 8.14 -2.38 -0.02 1.72 16 23 C -0.10 -1.67 4.68 30.77 0.14 -1.53 16 24 C -0.11 -1.36 5.90 30.75 0.18 -1.18 16 25 C -0.04 -0.65 6.30 30.02 0.19 -0.46 16 26 C 0.00 0.01 6.98 41.61 0.29 0.30 16 27 N -0.52 -12.14 11.25 -187.90 -2.11 -14.25 16 28 C 0.19 3.27 13.05 180.10 2.35 5.62 16 29 N -0.56 -9.06 5.91 -186.44 -1.10 -10.17 16 30 H 0.42 5.42 5.22 -92.71 -0.48 4.94 16 31 C -0.03 -0.68 6.32 41.14 0.26 -0.42 16 32 H 0.06 1.27 5.72 -2.39 -0.01 1.26 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.67 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.78 5.97 -2.39 -0.01 1.76 16 36 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.07 1.33 6.58 -2.39 -0.02 1.32 16 38 H 0.06 3.31 6.06 -2.38 -0.01 3.30 16 39 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 40 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.08 2.39 6.33 -2.39 -0.02 2.38 16 44 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.40 6.94 4.78 -92.70 -0.44 6.50 16 46 H 0.05 1.26 7.73 -2.39 -0.02 1.25 16 47 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 48 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.08 0.84 8.12 -2.38 -0.02 0.82 16 50 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -71.77 388.64 3.13 -68.65 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.02 Total: 22.65 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 7.50 Total: 9.71 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -6.37 Total: -126.78 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.63 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -71.77 3.13 -68.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941022900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.297 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds