Wall clock time and date at job start Wed Apr 1 2020 04:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39677 * 2 1 4 4 N 1.30497 * 108.69715 * 180.26366 * 3 2 1 5 5 C 1.34131 * 109.25889 * 359.77663 * 4 3 2 6 6 C 1.34665 * 108.01676 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.58801 * 179.97438 * 6 5 4 8 8 H 1.08997 * 115.55070 * 179.35674 * 7 6 5 9 9 C 1.53005 * 117.49608 * 33.65424 * 7 6 5 10 10 C 1.53001 * 117.49884 * 325.02995 * 7 6 5 11 11 H 1.08990 * 117.49880 * 359.97438 * 10 7 6 12 12 C 1.50699 * 117.49666 * 214.97528 * 10 7 6 13 13 O 1.21282 * 120.00155 * 0.02562 * 12 10 7 14 14 N 1.34776 * 119.99921 * 180.02562 * 12 10 7 15 15 C 1.46495 * 119.99924 * 180.27904 * 14 12 10 16 16 H 1.09002 * 109.46622 * 34.74909 * 15 14 12 17 17 C 1.53041 * 109.46008 * 274.78742 * 15 14 12 18 18 C 1.53193 * 109.31543 * 178.61159 * 17 15 14 19 19 N 1.46934 * 108.77052 * 54.63785 * 18 17 15 20 20 C 1.36933 * 120.62692 * 126.41197 * 19 18 17 21 21 H 1.08000 * 120.00357 * 331.82684 * 20 19 18 22 22 C 1.38810 * 119.99978 * 151.82385 * 20 19 18 23 23 N 1.31621 * 119.99978 * 343.07375 * 22 20 19 24 24 Si 1.86804 * 120.00219 * 163.06894 * 22 20 19 25 25 H 1.48498 * 109.47048 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46920 * 120.00275 * 24 22 20 27 27 H 1.48502 * 109.47075 * 240.00451 * 24 22 20 28 28 C 1.46916 * 118.73980 * 306.39131 * 19 18 17 29 29 C 1.53045 * 109.46194 * 154.72358 * 15 14 12 30 30 C 1.53007 * 109.49423 * 301.33598 * 29 15 14 31 31 C 1.53005 * 109.49707 * 61.39935 * 29 15 14 32 32 H 1.08996 * 109.46938 * 270.11935 * 1 2 3 33 33 H 1.09002 * 109.47116 * 30.12019 * 1 2 3 34 34 H 1.08999 * 109.46585 * 150.12042 * 1 2 3 35 35 H 1.07994 * 125.65088 * 0.07291 * 3 2 1 36 36 H 1.08006 * 125.99063 * 180.02562 * 5 4 3 37 37 H 1.08999 * 117.49212 * 145.01853 * 9 7 6 38 38 H 1.08998 * 117.49772 * 359.97438 * 9 7 6 39 39 H 0.97003 * 120.00027 * 359.97438 * 14 12 10 40 40 H 1.08994 * 109.50230 * 298.56895 * 17 15 14 41 41 H 1.09008 * 109.49498 * 58.66776 * 17 15 14 42 42 H 1.09000 * 109.58956 * 294.85687 * 18 17 15 43 43 H 1.08992 * 109.70509 * 174.49124 * 18 17 15 44 44 H 0.97004 * 119.99780 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.58817 * 293.82016 * 28 19 18 46 46 H 1.09003 * 109.70521 * 173.46833 * 28 19 18 47 47 H 1.08993 * 109.47001 * 60.00104 * 30 29 15 48 48 H 1.09002 * 109.46538 * 180.02562 * 30 29 15 49 49 H 1.09000 * 109.46685 * 299.99726 * 30 29 15 50 50 H 1.09002 * 109.46913 * 60.00108 * 31 29 15 51 51 H 1.08991 * 109.46789 * 180.02562 * 31 29 15 52 52 H 1.08997 * 109.46681 * 300.00356 * 31 29 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0870 0.0000 4 7 3.5096 0.6903 -0.0057 5 6 3.5461 -0.6505 -0.0045 6 6 2.2773 -1.1017 0.0027 7 6 1.8364 -2.5429 0.0059 8 1 0.7586 -2.7047 0.0230 9 6 2.7141 -3.5485 0.7538 10 6 2.6889 -3.5442 -0.7760 11 1 3.5683 -3.1607 -1.2931 12 6 1.9742 -4.6791 -1.4633 13 8 0.7675 -4.7723 -1.3843 14 7 2.6759 -5.5906 -2.1656 15 6 1.9806 -6.6903 -2.8387 16 1 1.0147 -6.3405 -3.2030 17 6 1.7668 -7.8392 -1.8505 18 6 1.0090 -8.9732 -2.5480 19 7 1.7402 -9.3521 -3.7648 20 6 2.1001 -10.6548 -3.9853 21 1 2.2764 -11.3153 -3.1492 22 6 2.2381 -11.1265 -5.2834 23 7 1.7154 -10.4542 -6.2870 24 14 3.1660 -12.7154 -5.6062 25 1 3.6520 -13.2749 -4.3194 26 1 2.2600 -13.6935 -6.2601 27 1 4.3231 -12.4410 -6.4956 28 6 2.0776 -8.3069 -4.7406 29 6 2.8234 -7.1803 -4.0185 30 6 3.0642 -6.0228 -4.9896 31 6 4.1662 -7.7035 -3.5044 32 1 -0.3633 0.0021 1.0276 33 1 -0.3633 0.8889 -0.5157 34 1 -0.3632 -0.8911 -0.5120 35 1 1.9335 2.1144 0.0011 36 1 4.4369 -1.2612 -0.0079 37 1 2.2137 -4.3720 1.2631 38 1 3.6106 -3.1677 1.2431 39 1 3.6410 -5.5158 -2.2290 40 1 2.7331 -8.2062 -1.5046 41 1 1.1863 -7.4835 -0.9992 42 1 0.0078 -8.6341 -2.8141 43 1 0.9387 -9.8326 -1.8814 44 1 1.8123 -10.7837 -7.1942 45 1 1.1636 -7.9135 -5.1855 46 1 2.7136 -8.7244 -5.5213 47 1 3.5923 -5.2204 -4.4746 48 1 3.6641 -6.3724 -5.8299 49 1 2.1074 -5.6513 -5.3564 50 1 3.9941 -8.5288 -2.8135 51 1 4.7662 -8.0519 -4.3450 52 1 4.6949 -6.9020 -2.9885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941042069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:53 Heat of formation + Delta-G solvation = 69.970731 kcal Electronic energy + Delta-G solvation = -31171.057944 eV Core-core repulsion = 27172.963985 eV Total energy + Delta-G solvation = -3998.093959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.41735 -40.20395 -38.54857 -36.54249 -34.57859 -34.31758 -32.83452 -32.01087 -29.83389 -29.31962 -27.31330 -26.77964 -26.03017 -25.63403 -23.96589 -23.50195 -22.01724 -21.65074 -20.60801 -20.10214 -19.68142 -18.22379 -17.70478 -17.13479 -16.51889 -16.00851 -15.76453 -15.18905 -14.94492 -14.71947 -14.36447 -14.17182 -13.92881 -13.84220 -13.62222 -13.40182 -13.32637 -13.21017 -13.07747 -12.69549 -12.61215 -12.33725 -12.12054 -11.65664 -11.51556 -11.32720 -11.31087 -11.06054 -10.90873 -10.86251 -10.68709 -10.59884 -10.23634 -10.22369 -10.10660 -9.98520 -9.84807 -9.82609 -9.66052 -9.41501 -8.68259 -8.50386 -8.46490 -6.68284 -5.80825 -3.22942 1.61154 2.41507 2.56951 2.87259 3.28112 3.35616 3.43849 3.45498 3.76416 4.19847 4.33931 4.41102 4.47785 4.49367 4.62890 4.73945 4.82634 4.92547 5.02603 5.04205 5.19549 5.27061 5.33401 5.39953 5.41769 5.54822 5.57329 5.66168 5.74478 5.85738 5.94079 6.07877 6.08678 6.10689 6.20846 6.30329 6.40045 6.42315 6.46230 6.47163 6.64381 6.69831 6.81203 6.86902 6.92346 6.97705 7.03590 7.30420 7.59961 7.72472 7.78302 7.79444 8.37941 8.43211 9.19433 9.82597 10.39704 11.27812 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026673 B = 0.002151 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.510688 B =13013.015262 C =13186.649334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.457 5.457 3 C 0.178 3.822 4 N -0.492 5.492 5 C -0.025 4.025 6 C 0.012 3.988 7 C -0.057 4.057 8 H 0.124 0.876 9 C -0.131 4.131 10 C -0.172 4.172 11 H 0.126 0.874 12 C 0.540 3.460 13 O -0.545 6.545 14 N -0.713 5.713 15 C 0.164 3.836 16 H 0.080 0.920 17 C -0.142 4.142 18 C 0.147 3.853 19 N -0.589 5.589 20 C -0.249 4.249 21 H 0.066 0.934 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.186 3.814 29 C -0.097 4.097 30 C -0.134 4.134 31 C -0.127 4.127 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.205 0.795 36 H 0.168 0.832 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.397 0.603 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.253 0.747 45 H 0.019 0.981 46 H 0.093 0.907 47 H 0.043 0.957 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.052 0.948 52 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 19.926 12.432 23.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.139 5.139 3 C -0.104 4.104 4 N -0.210 5.210 5 C -0.173 4.173 6 C -0.103 4.103 7 C -0.076 4.076 8 H 0.141 0.859 9 C -0.169 4.169 10 C -0.194 4.194 11 H 0.144 0.856 12 C 0.325 3.675 13 O -0.423 6.423 14 N -0.363 5.363 15 C 0.060 3.940 16 H 0.098 0.902 17 C -0.182 4.182 18 C 0.020 3.980 19 N -0.311 5.311 20 C -0.379 4.379 21 H 0.083 0.917 22 C -0.196 4.196 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.060 3.940 29 C -0.099 4.099 30 C -0.192 4.192 31 C -0.184 4.184 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.222 0.778 36 H 0.185 0.815 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.232 0.768 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.037 0.963 46 H 0.111 0.889 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.071 0.929 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 1.139 20.304 12.292 23.762 hybrid contribution 0.147 -1.153 -0.424 1.237 sum 1.286 19.151 11.868 22.567 Atomic orbital electron populations 1.22107 0.76400 1.05113 1.03804 1.45222 1.07755 1.06502 1.54429 1.24932 0.85614 0.93371 1.06434 1.70281 1.19431 1.11865 1.19437 1.21995 0.95573 0.91143 1.08625 1.20297 0.90947 0.88025 1.11005 1.20106 0.98831 0.84560 1.04148 0.85852 1.23129 1.01838 1.00575 0.91379 1.22443 1.02569 0.98598 0.95792 0.85563 1.19493 0.87228 0.82063 0.78712 1.90687 1.14152 1.75825 1.61675 1.46257 1.10848 1.27408 1.51782 1.21015 0.95857 0.85019 0.92091 0.90214 1.22434 1.01292 0.96629 0.97820 1.20878 0.93141 0.94560 0.89442 1.44052 1.63166 1.04288 1.19627 1.19191 1.40011 0.87156 0.91495 0.91665 1.25037 1.00147 0.97855 0.96543 1.70034 1.45552 1.40199 0.98871 0.86266 0.79537 0.83330 0.77907 1.20274 1.21788 1.21591 1.20817 0.96451 0.85463 0.91314 1.21567 0.96549 0.97267 0.94543 1.21766 1.01161 0.97237 0.99047 1.21745 0.95416 0.99995 1.01271 0.90319 0.89253 0.89188 0.77806 0.81478 0.87409 0.87221 0.76786 0.91794 0.92882 0.96337 0.92580 0.93686 0.96317 0.88905 0.93805 0.92571 0.93133 0.91082 0.92930 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.35 10.96 59.85 0.66 1.00 16 2 N -0.46 -3.91 3.15 -121.36 -0.38 -4.30 16 3 C 0.18 1.58 12.56 -90.37 -1.14 0.45 16 4 N -0.49 -5.76 11.25 -14.67 -0.16 -5.93 16 5 C -0.03 -0.27 10.94 -17.81 -0.19 -0.47 16 6 C 0.01 0.12 6.63 -81.60 -0.54 -0.42 16 7 C -0.06 -0.55 5.53 -91.77 -0.51 -1.06 16 8 H 0.12 1.31 6.93 -51.93 -0.36 0.95 16 9 C -0.13 -1.10 9.76 -26.72 -0.26 -1.36 16 10 C -0.17 -1.72 5.71 -91.77 -0.52 -2.24 16 11 H 0.13 1.07 7.98 -51.93 -0.41 0.65 16 12 C 0.54 7.40 7.58 -10.99 -0.08 7.31 16 13 O -0.55 -9.50 15.92 5.56 0.09 -9.41 16 14 N -0.71 -9.60 4.29 -53.77 -0.23 -9.83 16 15 C 0.16 2.74 1.57 -67.89 -0.11 2.64 16 16 H 0.08 1.55 7.57 -51.93 -0.39 1.15 16 17 C -0.14 -2.49 5.31 -26.61 -0.14 -2.63 16 18 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 19 N -0.59 -14.13 2.43 -172.32 -0.42 -14.55 16 20 C -0.25 -6.58 9.58 -15.06 -0.14 -6.72 16 21 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 23 N -0.90 -25.56 11.19 55.49 0.62 -24.93 16 24 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 28 C 0.19 4.22 3.98 -3.72 -0.01 4.20 16 29 C -0.10 -1.69 0.56 -154.38 -0.09 -1.77 16 30 C -0.13 -2.07 8.31 37.16 0.31 -1.76 16 31 C -0.13 -2.09 7.83 37.16 0.29 -1.79 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.52 7.38 -51.93 -0.38 0.13 16 35 H 0.21 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.11 0.74 7.95 -51.93 -0.41 0.32 16 39 H 0.40 4.49 6.66 -40.82 -0.27 4.22 16 40 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 41 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 47 H 0.04 0.58 7.36 -51.93 -0.38 0.19 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 52 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -32.91 407.69 -10.49 -43.40 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.52 Total: 4.79 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -2.59 Total: -1.59 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.58 Total: -59.54 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.91 -10.49 -43.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941042069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.376 kcal (2) G-P(sol) polarization free energy of solvation -32.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds