Wall clock time and date at job start Wed Apr 1 2020 04:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00208 * 2 1 4 4 C 1.39027 * 119.99870 * 179.97438 * 2 1 3 5 5 C 1.39122 * 119.64674 * 5.30415 * 4 2 1 6 6 C 1.39501 * 118.92913 * 180.27126 * 5 4 2 7 7 C 1.48164 * 120.88005 * 179.71053 * 6 5 4 8 8 O 1.21516 * 120.00106 * 359.44617 * 7 6 5 9 9 N 1.34777 * 120.00072 * 179.71863 * 7 6 5 10 10 C 1.46497 * 120.00270 * 179.72238 * 9 7 6 11 11 H 1.09001 * 109.45647 * 325.00657 * 10 9 7 12 12 C 1.53041 * 109.45622 * 84.97296 * 10 9 7 13 13 C 1.53192 * 109.30998 * 181.38696 * 12 10 9 14 14 N 1.46931 * 108.77681 * 305.36519 * 13 12 10 15 15 C 1.36937 * 120.63123 * 233.63102 * 14 13 12 16 16 H 1.07996 * 119.99624 * 152.63147 * 15 14 13 17 17 C 1.38813 * 120.00151 * 332.63458 * 15 14 13 18 18 N 1.31613 * 120.00355 * 159.33730 * 17 15 14 19 19 Si 1.86801 * 119.99697 * 339.33307 * 17 15 14 20 20 H 1.48497 * 109.47195 * 92.96985 * 19 17 15 21 21 H 1.48502 * 109.46923 * 212.97058 * 19 17 15 22 22 H 1.48497 * 109.47248 * 332.96852 * 19 17 15 23 23 C 1.46921 * 118.73452 * 53.60899 * 14 13 12 24 24 C 1.53036 * 109.46215 * 205.02796 * 10 9 7 25 25 C 1.52997 * 109.49756 * 298.56873 * 24 10 9 26 26 C 1.53006 * 109.49502 * 58.66575 * 24 10 9 27 27 C 1.40013 * 118.23599 * 359.43585 * 6 5 4 28 28 C 1.37946 * 119.17610 * 0.27830 * 27 6 5 29 29 N 1.31919 * 121.00409 * 0.02562 * 28 27 6 30 30 H 1.09000 * 109.47140 * 270.00206 * 1 2 3 31 31 H 1.09000 * 109.47012 * 30.00445 * 1 2 3 32 32 H 1.08995 * 109.47077 * 150.00050 * 1 2 3 33 33 H 1.09001 * 109.47113 * 239.99894 * 3 2 1 34 34 H 1.09004 * 109.47072 * 359.97438 * 3 2 1 35 35 H 1.09000 * 109.47320 * 119.99604 * 3 2 1 36 36 H 1.08004 * 120.53689 * 359.97438 * 5 4 2 37 37 H 0.96994 * 119.99584 * 359.72559 * 9 7 6 38 38 H 1.08998 * 109.50114 * 301.33833 * 12 10 9 39 39 H 1.09001 * 109.49893 * 61.40377 * 12 10 9 40 40 H 1.08996 * 109.59130 * 65.15286 * 13 12 10 41 41 H 1.09005 * 109.58672 * 185.43677 * 13 12 10 42 42 H 0.97000 * 120.00766 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.58985 * 66.18142 * 23 14 13 44 44 H 1.09008 * 109.58290 * 186.46118 * 23 14 13 45 45 H 1.09001 * 109.47383 * 59.99781 * 25 24 10 46 46 H 1.09007 * 109.47125 * 179.97438 * 25 24 10 47 47 H 1.09002 * 109.47417 * 299.99772 * 25 24 10 48 48 H 1.08999 * 109.47090 * 60.00066 * 26 24 10 49 49 H 1.09005 * 109.46752 * 180.02562 * 26 24 10 50 50 H 1.08997 * 109.46791 * 299.99593 * 26 24 10 51 51 H 1.08001 * 120.40979 * 180.25327 * 27 6 5 52 52 H 1.07998 * 119.49534 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4616 -2.4020 -0.1107 6 6 2.1736 -3.6016 -0.1028 7 6 1.4729 -4.9025 -0.2122 8 8 0.2614 -4.9346 -0.3004 9 7 2.1789 -6.0506 -0.2085 10 6 1.4857 -7.3371 -0.3105 11 1 0.5325 -7.2787 0.2150 12 6 1.2361 -7.6661 -1.7842 13 6 0.4806 -8.9950 -1.8856 14 7 1.2343 -10.0243 -1.1567 15 6 1.5841 -11.1980 -1.7694 16 1 2.4606 -11.7374 -1.4423 17 6 0.8121 -11.6942 -2.8109 18 7 1.3275 -12.5602 -3.6574 19 14 -0.9583 -11.1329 -3.0108 20 1 -1.0086 -9.9748 -3.9389 21 1 -1.7710 -12.2460 -3.5637 22 1 -1.5027 -10.7317 -1.6888 23 6 1.6059 -9.7702 0.2418 24 6 2.3489 -8.4327 0.3191 25 6 3.6730 -8.5392 -0.4400 26 6 2.6255 -8.0864 1.7836 27 6 3.5683 -3.5433 0.0054 28 6 4.1843 -2.3131 0.1055 29 7 3.4795 -1.1980 0.1009 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5138 33 1 2.8242 1.3264 -0.8900 34 1 1.4892 2.0972 -0.0005 35 1 2.8242 1.3264 0.8900 36 1 0.3850 -2.4035 -0.1969 37 1 3.1460 -6.0249 -0.1381 38 1 0.6411 -6.8738 -2.2382 39 1 2.1900 -7.7487 -2.3052 40 1 -0.5102 -8.8866 -1.4446 41 1 0.3851 -9.2820 -2.9328 42 1 0.7880 -12.9073 -4.3850 43 1 0.7068 -9.7250 0.8564 44 1 2.2530 -10.5713 0.5993 45 1 4.1998 -7.5864 -0.3870 46 1 4.2876 -9.3194 0.0091 47 1 3.4751 -8.7873 -1.4828 48 1 1.6817 -8.0122 2.3239 49 1 3.2407 -8.8668 2.2315 50 1 3.1515 -7.1334 1.8384 51 1 4.1546 -4.4504 0.0109 52 1 5.2598 -2.2622 0.1896 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941071802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:18 Heat of formation + Delta-G solvation = 22.051271 kcal Electronic energy + Delta-G solvation = -31403.684678 eV Core-core repulsion = 27403.512775 eV Total energy + Delta-G solvation = -4000.171903 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.87465 -40.98053 -39.56649 -37.45488 -36.51696 -34.68587 -33.74880 -33.56587 -31.92562 -31.27600 -29.18798 -28.16443 -27.88968 -27.09699 -26.33656 -24.98270 -23.59412 -23.08392 -22.91778 -21.29303 -20.02683 -19.03786 -18.67651 -17.93920 -17.40927 -16.98096 -16.79863 -16.52136 -16.38930 -16.03344 -15.98438 -15.57518 -15.47199 -15.17574 -15.01139 -14.90556 -14.79839 -14.32402 -14.25476 -13.99146 -13.87874 -13.48906 -13.34092 -13.14921 -13.07218 -13.00584 -12.75084 -12.65511 -12.54787 -12.45235 -12.18888 -12.01639 -11.87378 -11.56301 -11.43765 -11.37934 -11.18335 -11.09824 -10.79474 -10.72242 -10.47410 -10.06971 -8.93308 -8.57371 -8.15792 -5.46025 -0.25742 0.29554 1.28257 1.39345 1.47183 1.84662 1.86871 2.08560 2.40817 2.92574 3.04758 3.32271 3.48670 3.58869 3.64378 3.84480 3.91358 3.98544 4.07400 4.13161 4.22006 4.31775 4.34231 4.41509 4.47303 4.48612 4.51296 4.68757 4.71080 4.76519 4.77125 4.82093 4.85637 4.87614 4.89621 4.91954 4.96439 5.02240 5.10257 5.13820 5.16608 5.21768 5.28402 5.39018 5.43410 5.49877 5.67538 5.88090 5.93928 6.14684 6.29287 6.46389 6.90985 7.07913 7.10354 7.62590 8.04219 9.03727 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018730 B = 0.002556 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.563218 B =10951.219940 C =11709.188740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.623 5.623 3 C 0.106 3.894 4 C 0.386 3.614 5 C -0.199 4.199 6 C -0.055 4.055 7 C 0.555 3.445 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.173 3.827 11 H 0.068 0.932 12 C -0.134 4.134 13 C 0.126 3.874 14 N -0.612 5.612 15 C -0.234 4.234 16 H 0.063 0.937 17 C -0.031 4.031 18 N -0.953 5.953 19 Si 0.934 3.066 20 H -0.283 1.283 21 H -0.312 1.312 22 H -0.266 1.266 23 C 0.155 3.845 24 C -0.078 4.078 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.199 4.199 28 C 0.149 3.851 29 N -0.543 5.543 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.136 0.864 37 H 0.413 0.587 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.051 0.949 42 H 0.260 0.740 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.050 0.950 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.163 0.837 52 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 27.499 11.552 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.337 5.337 3 C -0.036 4.036 4 C 0.151 3.849 5 C -0.225 4.225 6 C -0.066 4.066 7 C 0.343 3.657 8 O -0.452 6.452 9 N -0.346 5.346 10 C 0.068 3.932 11 H 0.086 0.914 12 C -0.174 4.174 13 C 0.000 4.000 14 N -0.336 5.336 15 C -0.364 4.364 16 H 0.080 0.920 17 C -0.226 4.226 18 N -0.600 5.600 19 Si 0.764 3.236 20 H -0.210 1.210 21 H -0.241 1.241 22 H -0.191 1.191 23 C 0.030 3.970 24 C -0.081 4.081 25 C -0.187 4.187 26 C -0.189 4.189 27 C -0.222 4.222 28 C -0.008 4.008 29 N -0.261 5.261 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.071 0.929 36 H 0.154 0.846 37 H 0.253 0.747 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.180 0.820 52 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 5.486 28.333 11.457 31.050 hybrid contribution -1.341 -1.251 -0.794 1.998 sum 4.145 27.082 10.664 29.399 Atomic orbital electron populations 1.21937 0.77077 1.04072 1.02385 1.46496 1.06099 1.02930 1.78179 1.21593 0.96943 0.83572 1.01478 1.18382 0.88592 0.86274 0.91618 1.21565 1.01673 0.90966 1.08275 1.20043 0.94893 0.92156 0.99521 1.18563 0.86614 0.84597 0.75960 1.90754 1.15429 1.87939 1.51120 1.45902 1.11289 1.04586 1.72813 1.20708 0.95706 0.81802 0.94963 0.91422 1.22302 1.01258 0.96508 0.97379 1.21254 0.93779 0.88974 0.95972 1.44434 1.65198 1.14729 1.09217 1.18850 1.05685 0.98774 1.13048 0.91964 1.25778 1.00896 0.97899 0.98037 1.69933 1.37153 1.36344 1.16548 0.86110 0.83558 0.75780 0.78112 1.21019 1.24073 1.19057 1.21181 0.96833 0.95286 0.83742 1.21199 0.95978 0.94098 0.96783 1.21762 0.95019 1.01721 1.00161 1.21769 1.01883 1.02432 0.92821 1.22254 0.92649 1.01307 1.06014 1.22979 1.01183 0.85717 0.90962 1.67144 1.05971 1.33302 1.19710 0.92231 0.88465 0.91715 0.93165 0.88616 0.92868 0.84586 0.74732 0.92649 0.90852 0.95896 0.93124 0.93104 0.95383 0.91351 0.90955 0.92339 0.93835 0.93077 0.91086 0.90935 0.81989 0.78682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.25 127.77 1.31 2.37 16 2 N -0.62 -10.42 3.39 -754.04 -2.56 -12.97 16 3 C 0.11 1.29 10.18 127.77 1.30 2.59 16 4 C 0.39 8.19 7.37 133.08 0.98 9.17 16 5 C -0.20 -4.64 8.84 22.79 0.20 -4.44 16 6 C -0.06 -1.25 5.90 -19.91 -0.12 -1.37 16 7 C 0.56 15.31 7.76 86.88 0.67 15.98 16 8 O -0.57 -20.49 16.10 -3.77 -0.06 -20.56 16 9 N -0.69 -16.50 4.25 -444.98 -1.89 -18.39 16 10 C 0.17 5.19 1.57 45.02 0.07 5.26 16 11 H 0.07 2.32 7.58 -2.39 -0.02 2.31 16 12 C -0.13 -4.83 5.31 30.67 0.16 -4.66 16 13 C 0.13 5.54 4.20 86.36 0.36 5.90 16 14 N -0.61 -27.95 2.21 -699.09 -1.54 -29.49 16 15 C -0.23 -12.85 10.04 84.03 0.84 -12.01 16 16 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 17 C -0.03 -1.82 5.23 84.86 0.44 -1.38 16 18 N -0.95 -59.55 13.97 21.65 0.30 -59.25 16 19 Si 0.93 47.71 24.35 68.60 1.67 49.38 16 20 H -0.28 -14.00 6.62 99.48 0.66 -13.34 16 21 H -0.31 -16.18 7.11 99.48 0.71 -15.47 16 22 H -0.27 -13.20 6.63 99.48 0.66 -12.54 16 23 C 0.15 5.62 5.20 86.36 0.45 6.07 16 24 C -0.08 -2.17 0.56 -52.10 -0.03 -2.20 16 25 C -0.13 -3.41 7.83 71.98 0.56 -2.85 16 26 C -0.13 -2.73 8.31 71.98 0.60 -2.13 16 27 C -0.20 -3.16 9.61 22.63 0.22 -2.94 16 28 C 0.15 2.24 11.16 84.61 0.94 3.19 16 29 N -0.54 -10.83 9.54 -193.40 -1.85 -12.68 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.10 0.68 7.92 -2.39 -0.02 0.66 16 32 H 0.06 0.92 5.97 -2.39 -0.01 0.90 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.62 7.79 -2.38 -0.02 0.60 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.14 3.30 5.70 -2.91 -0.02 3.29 16 37 H 0.41 7.16 4.80 -92.71 -0.44 6.71 16 38 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 2.61 6.34 -2.39 -0.02 2.59 16 40 H 0.02 1.03 7.08 -2.39 -0.02 1.01 16 41 H 0.05 2.47 4.50 -2.38 -0.01 2.46 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.07 2.47 7.93 -2.38 -0.02 2.45 16 45 H 0.07 1.35 6.58 -2.39 -0.02 1.34 16 46 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.04 1.47 5.97 -2.39 -0.01 1.46 16 48 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 50 H 0.07 1.20 7.36 -2.39 -0.02 1.18 16 51 H 0.16 1.56 6.53 -2.91 -0.02 1.54 16 52 H 0.20 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -74.98 395.08 3.45 -71.53 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.39 Total: 15.86 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 8.98 Total: 16.55 kcal Atomic # 7 Polarization: -125.24 SS G_CDS: -7.53 Total: -132.77 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.67 Total: 49.38 kcal Total: -74.98 3.45 -71.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941071802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.585 kcal (2) G-P(sol) polarization free energy of solvation -74.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds