Wall clock time and date at job start Wed Apr 1 2020 04:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00319 * 2 1 4 4 C 1.39022 * 119.99558 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64839 * 5.27617 * 4 2 1 6 6 C 1.39500 * 118.92766 * 180.20088 * 5 4 2 7 7 C 1.48165 * 120.87613 * 179.80147 * 6 5 4 8 8 O 1.21508 * 120.00326 * 359.72506 * 7 6 5 9 9 N 1.34780 * 119.99552 * 179.71681 * 7 6 5 10 10 C 1.46504 * 119.99734 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45712 * 34.97578 * 10 9 7 12 12 C 1.53042 * 109.45893 * 275.00547 * 10 9 7 13 13 C 1.53191 * 109.30934 * 178.62923 * 12 10 9 14 14 N 1.46933 * 108.78000 * 54.63332 * 13 12 10 15 15 C 1.36934 * 120.63168 * 126.36332 * 14 13 12 16 16 H 1.08001 * 120.00050 * 332.51150 * 15 14 13 17 17 C 1.38809 * 119.99751 * 152.50359 * 15 14 13 18 18 N 1.31614 * 120.00350 * 335.03508 * 17 15 14 19 19 Si 1.86804 * 119.99809 * 155.03104 * 17 15 14 20 20 H 1.48500 * 109.46888 * 60.00458 * 19 17 15 21 21 H 1.48503 * 109.46987 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47223 * 300.00100 * 19 17 15 23 23 C 1.46928 * 118.73761 * 306.64597 * 14 13 12 24 24 C 1.52768 * 109.00701 * 53.30366 * 23 14 13 25 25 C 1.52996 * 109.56311 * 185.55450 * 24 23 14 26 26 C 1.52999 * 109.35774 * 65.50170 * 24 23 14 27 27 C 1.40014 * 118.24069 * 359.53232 * 6 5 4 28 28 C 1.37953 * 119.17344 * 0.24542 * 27 6 5 29 29 N 1.31921 * 121.00108 * 359.97438 * 28 27 6 30 30 H 1.09007 * 109.46524 * 270.00163 * 1 2 3 31 31 H 1.09000 * 109.47051 * 29.99770 * 1 2 3 32 32 H 1.08993 * 109.47243 * 150.00125 * 1 2 3 33 33 H 1.08996 * 109.46899 * 270.00504 * 3 2 1 34 34 H 1.09005 * 109.46661 * 30.00000 * 3 2 1 35 35 H 1.08993 * 109.47144 * 149.99781 * 3 2 1 36 36 H 1.07999 * 120.53492 * 0.02562 * 5 4 2 37 37 H 0.97000 * 120.00428 * 0.02562 * 9 7 6 38 38 H 1.08992 * 109.49955 * 58.67978 * 12 10 9 39 39 H 1.09002 * 109.52699 * 298.59022 * 12 10 9 40 40 H 1.09001 * 109.59242 * 294.84995 * 13 12 10 41 41 H 1.08999 * 109.70796 * 174.48794 * 13 12 10 42 42 H 0.97008 * 120.00026 * 354.25254 * 18 17 15 43 43 H 1.08992 * 109.58881 * 173.13939 * 23 14 13 44 44 H 1.08996 * 109.58116 * 293.56697 * 23 14 13 45 45 H 1.09002 * 109.47461 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47181 * 299.96595 * 25 24 23 47 47 H 1.08999 * 109.47728 * 59.96496 * 25 24 23 48 48 H 1.08995 * 109.47216 * 300.15416 * 26 24 23 49 49 H 1.08996 * 109.47442 * 60.15530 * 26 24 23 50 50 H 1.09007 * 109.47167 * 180.15838 * 26 24 23 51 51 H 1.07994 * 120.41642 * 180.23017 * 27 6 5 52 52 H 1.08000 * 119.49838 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4614 -2.4020 -0.1101 6 6 2.1735 -3.6015 -0.1037 7 6 1.4729 -4.9024 -0.2146 8 8 0.2618 -4.9342 -0.3078 9 7 2.1791 -6.0504 -0.2123 10 6 1.4864 -7.3366 -0.3225 11 1 0.6200 -7.2277 -0.9749 12 6 1.0259 -7.7883 1.0653 13 6 0.2724 -9.1163 0.9417 14 7 1.1312 -10.0845 0.2461 15 6 1.3953 -11.3080 0.8014 16 1 1.3768 -11.4294 1.8744 17 6 1.6865 -12.3923 -0.0149 18 7 1.2518 -12.4165 -1.2570 19 14 2.6954 -13.8172 0.6495 20 1 1.9944 -14.4208 1.8112 21 1 2.8659 -14.8408 -0.4128 22 1 4.0284 -13.3225 1.0780 23 6 1.7064 -9.7125 -1.0537 24 6 2.4395 -8.3798 -0.9103 25 6 2.9248 -7.9117 -2.2836 26 6 3.6390 -8.5586 0.0224 27 6 3.5683 -3.5434 0.0045 28 6 4.1842 -2.3132 0.1054 29 7 3.4795 -1.1980 0.1006 30 1 -0.3633 0.0000 1.0278 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 2.3792 1.5833 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1499 1.1383 0.5138 36 1 0.3849 -2.4034 -0.1967 37 1 3.1459 -6.0250 -0.1377 38 1 0.3657 -7.0338 1.4930 39 1 1.8935 -7.9211 1.7117 40 1 -0.6439 -8.9649 0.3712 41 1 0.0266 -9.4932 1.9345 42 1 0.6592 -11.7185 -1.5772 43 1 2.4086 -10.4812 -1.3761 44 1 0.9094 -9.6105 -1.7902 45 1 3.4472 -6.9607 -2.1797 46 1 3.6036 -8.6550 -2.7019 47 1 2.0698 -7.7860 -2.9479 48 1 3.2924 -8.8934 1.0000 49 1 4.3175 -9.3017 -0.3965 50 1 4.1619 -7.6080 0.1283 51 1 4.1546 -4.4503 0.0093 52 1 5.2598 -2.2622 0.1895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941071804.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:23 Heat of formation + Delta-G solvation = 35.534063 kcal Electronic energy + Delta-G solvation = -31385.754069 eV Core-core repulsion = 27386.166824 eV Total energy + Delta-G solvation = -3999.587245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.87733 -39.82364 -38.20052 -36.75599 -34.86294 -33.23743 -32.68078 -32.02893 -30.69381 -29.25494 -28.57145 -26.89064 -26.17400 -25.75165 -25.30259 -23.75286 -22.50738 -21.93648 -20.76447 -20.16426 -18.84143 -17.76559 -17.35418 -17.00767 -16.19475 -15.94428 -15.66782 -15.62126 -14.89557 -14.70996 -14.52322 -14.39278 -14.06736 -13.83185 -13.69764 -13.64014 -13.53244 -13.29934 -12.95306 -12.69580 -12.52362 -12.47303 -12.44345 -11.93154 -11.91291 -11.56558 -11.51621 -10.97555 -10.95727 -10.68659 -10.45948 -10.38724 -10.37109 -10.15299 -10.06680 -10.05578 -9.95404 -9.80918 -9.60803 -9.26321 -8.78547 -8.37009 -7.87654 -6.89033 -6.07168 -3.23061 0.64340 1.05367 2.55708 2.92016 3.17329 3.49216 3.51444 3.69841 3.76102 4.23059 4.49533 4.58592 4.61949 4.80159 4.84110 4.92758 4.96415 5.02688 5.07720 5.12957 5.29778 5.31452 5.33360 5.40211 5.49143 5.49868 5.52234 5.59911 5.74921 5.81663 5.92099 5.95780 5.98073 6.09064 6.15995 6.20404 6.29133 6.33726 6.37737 6.52591 6.55373 6.55970 6.71354 6.78363 6.81040 6.87475 7.00410 7.06936 7.13962 7.58043 7.82047 8.00087 8.22599 8.56990 9.10682 9.84040 10.28560 11.21428 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.002302 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.191687 B =12158.101329 C =12559.194208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.618 5.618 3 C 0.100 3.900 4 C 0.398 3.602 5 C -0.182 4.182 6 C -0.040 4.040 7 C 0.553 3.447 8 O -0.533 6.533 9 N -0.709 5.709 10 C 0.164 3.836 11 H 0.082 0.918 12 C -0.143 4.143 13 C 0.149 3.851 14 N -0.596 5.596 15 C -0.346 4.346 16 H 0.056 0.944 17 C -0.023 4.023 18 N -0.915 5.915 19 Si 1.062 2.938 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.293 1.293 23 C 0.165 3.835 24 C -0.091 4.091 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.207 4.207 28 C 0.147 3.853 29 N -0.532 5.532 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.145 0.855 37 H 0.397 0.603 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.018 0.982 41 H 0.058 0.942 42 H 0.269 0.731 43 H 0.086 0.914 44 H 0.017 0.983 45 H 0.046 0.954 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.054 0.946 50 H 0.031 0.969 51 H 0.135 0.865 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.890 24.283 1.442 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.333 5.333 3 C -0.043 4.043 4 C 0.163 3.837 5 C -0.208 4.208 6 C -0.051 4.051 7 C 0.338 3.662 8 O -0.410 6.410 9 N -0.360 5.360 10 C 0.060 3.940 11 H 0.100 0.900 12 C -0.183 4.183 13 C 0.023 3.977 14 N -0.319 5.319 15 C -0.475 4.475 16 H 0.073 0.927 17 C -0.225 4.225 18 N -0.556 5.556 19 Si 0.891 3.109 20 H -0.220 1.220 21 H -0.212 1.212 22 H -0.221 1.221 23 C 0.039 3.961 24 C -0.094 4.094 25 C -0.195 4.195 26 C -0.186 4.186 27 C -0.230 4.230 28 C -0.010 4.010 29 N -0.250 5.250 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.163 0.837 37 H 0.234 0.766 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.104 0.896 44 H 0.035 0.965 45 H 0.065 0.935 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.050 0.950 51 H 0.152 0.848 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.033 23.705 1.048 24.256 hybrid contribution -0.696 0.778 0.452 1.137 sum 4.338 24.482 1.501 24.909 Atomic orbital electron populations 1.21774 0.78192 1.03344 1.01850 1.46187 1.05211 1.02907 1.78962 1.21559 0.97663 0.83815 1.01255 1.18206 0.88308 0.85783 0.91374 1.21548 1.01832 0.90314 1.07112 1.20187 0.93700 0.93634 0.97588 1.18205 0.87060 0.83708 0.77189 1.90764 1.13489 1.87405 1.49350 1.46236 1.10720 1.05982 1.73059 1.21032 0.95074 0.80251 0.97613 0.89961 1.22442 1.00841 0.98867 0.96161 1.20866 0.91856 0.88218 0.96797 1.44107 1.53207 1.13978 1.20608 1.19936 1.48786 0.86517 0.92292 0.92654 1.25795 1.01291 0.99142 0.96322 1.70784 1.31856 1.34900 1.18013 0.83571 0.76279 0.75988 0.75012 1.22034 1.21152 1.22076 1.20911 0.95381 0.92123 0.87726 1.21361 0.96056 0.97318 0.94636 1.21799 1.00912 1.00201 0.96550 1.21765 0.96509 0.99208 1.01096 1.21996 0.93884 0.99881 1.07243 1.22344 0.99650 0.86405 0.92617 1.67007 1.06083 1.32307 1.19608 0.92728 0.90866 0.90703 0.93484 0.91864 0.90199 0.83716 0.76631 0.92617 0.91640 0.96403 0.92373 0.92012 0.89616 0.96458 0.93529 0.92356 0.92986 0.90901 0.92661 0.94997 0.84756 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.28 59.85 0.62 1.24 16 2 N -0.62 -5.69 3.39 -189.68 -0.64 -6.34 16 3 C 0.10 0.71 10.50 59.85 0.63 1.34 16 4 C 0.40 4.54 7.37 -155.07 -1.14 3.40 16 5 C -0.18 -2.24 8.84 -38.78 -0.34 -2.58 16 6 C -0.04 -0.51 5.90 -104.68 -0.62 -1.12 16 7 C 0.55 8.32 7.76 -12.18 -0.09 8.23 16 8 O -0.53 -9.81 16.10 5.36 0.09 -9.73 16 9 N -0.71 -9.94 4.25 -54.61 -0.23 -10.17 16 10 C 0.16 2.77 1.57 -67.89 -0.11 2.66 16 11 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 12 C -0.14 -2.57 5.31 -26.61 -0.14 -2.71 16 13 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 14 N -0.60 -14.30 2.30 -172.58 -0.40 -14.70 16 15 C -0.35 -9.31 9.49 -15.06 -0.14 -9.46 16 16 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 17 C -0.02 -0.65 4.68 -17.43 -0.08 -0.73 16 18 N -0.92 -26.78 12.41 55.49 0.69 -26.09 16 19 Si 1.06 24.70 29.99 -169.99 -5.10 19.61 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 C 0.17 3.67 3.33 -3.93 -0.01 3.66 16 24 C -0.09 -1.58 0.56 -154.61 -0.09 -1.66 16 25 C -0.14 -2.06 8.31 37.16 0.31 -1.75 16 26 C -0.13 -2.11 7.82 37.16 0.29 -1.82 16 27 C -0.21 -2.08 9.61 -39.02 -0.37 -2.46 16 28 C 0.15 1.40 11.16 -17.62 -0.20 1.20 16 29 N -0.53 -5.98 9.05 -12.48 -0.11 -6.09 16 30 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 5.97 -51.93 -0.31 0.23 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.32 8.07 -51.93 -0.42 -0.10 16 35 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 36 H 0.15 1.75 5.70 -52.49 -0.30 1.45 16 37 H 0.40 4.66 4.80 -40.82 -0.20 4.46 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.17 6.34 -51.93 -0.33 0.84 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 42 H 0.27 7.96 6.71 -40.82 -0.27 7.69 16 43 H 0.09 2.14 6.30 -51.93 -0.33 1.82 16 44 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 45 H 0.05 0.60 7.36 -51.93 -0.38 0.21 16 46 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.36 5.97 -51.93 -0.31 1.05 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.03 0.41 6.58 -51.93 -0.34 0.07 16 51 H 0.13 1.07 6.53 -52.49 -0.34 0.72 16 52 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -32.33 399.89 -9.34 -41.67 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -8.14 Total: 5.24 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -1.52 Total: 0.58 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.70 Total: -63.39 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.33 -9.34 -41.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941071804.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.204 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds