Wall clock time and date at job start Wed Apr 1 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46498 * 120.00319 * 2 1 4 4 C 1.39022 * 119.99558 * 179.97438 * 2 1 3 5 5 C 1.39125 * 119.64839 * 5.27617 * 4 2 1 6 6 C 1.39500 * 118.92766 * 180.20088 * 5 4 2 7 7 C 1.48165 * 120.87613 * 179.80147 * 6 5 4 8 8 O 1.21508 * 120.00326 * 359.72506 * 7 6 5 9 9 N 1.34780 * 119.99552 * 179.71681 * 7 6 5 10 10 C 1.46504 * 119.99734 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45712 * 34.97578 * 10 9 7 12 12 C 1.53042 * 109.45893 * 275.00547 * 10 9 7 13 13 C 1.53191 * 109.30934 * 178.62923 * 12 10 9 14 14 N 1.46933 * 108.78000 * 54.63332 * 13 12 10 15 15 C 1.36934 * 120.63168 * 126.36332 * 14 13 12 16 16 H 1.08001 * 120.00050 * 332.51150 * 15 14 13 17 17 C 1.38809 * 119.99751 * 152.50359 * 15 14 13 18 18 N 1.31614 * 120.00350 * 335.03508 * 17 15 14 19 19 Si 1.86804 * 119.99809 * 155.03104 * 17 15 14 20 20 H 1.48500 * 109.46888 * 60.00458 * 19 17 15 21 21 H 1.48503 * 109.46987 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47223 * 300.00100 * 19 17 15 23 23 C 1.46928 * 118.73761 * 306.64597 * 14 13 12 24 24 C 1.52768 * 109.00701 * 53.30366 * 23 14 13 25 25 C 1.52996 * 109.56311 * 185.55450 * 24 23 14 26 26 C 1.52999 * 109.35774 * 65.50170 * 24 23 14 27 27 C 1.40014 * 118.24069 * 359.53232 * 6 5 4 28 28 C 1.37953 * 119.17344 * 0.24542 * 27 6 5 29 29 N 1.31921 * 121.00108 * 359.97438 * 28 27 6 30 30 H 1.09007 * 109.46524 * 270.00163 * 1 2 3 31 31 H 1.09000 * 109.47051 * 29.99770 * 1 2 3 32 32 H 1.08993 * 109.47243 * 150.00125 * 1 2 3 33 33 H 1.08996 * 109.46899 * 270.00504 * 3 2 1 34 34 H 1.09005 * 109.46661 * 30.00000 * 3 2 1 35 35 H 1.08993 * 109.47144 * 149.99781 * 3 2 1 36 36 H 1.07999 * 120.53492 * 0.02562 * 5 4 2 37 37 H 0.97000 * 120.00428 * 0.02562 * 9 7 6 38 38 H 1.08992 * 109.49955 * 58.67978 * 12 10 9 39 39 H 1.09002 * 109.52699 * 298.59022 * 12 10 9 40 40 H 1.09001 * 109.59242 * 294.84995 * 13 12 10 41 41 H 1.08999 * 109.70796 * 174.48794 * 13 12 10 42 42 H 0.97008 * 120.00026 * 354.25254 * 18 17 15 43 43 H 1.08992 * 109.58881 * 173.13939 * 23 14 13 44 44 H 1.08996 * 109.58116 * 293.56697 * 23 14 13 45 45 H 1.09002 * 109.47461 * 179.97438 * 25 24 23 46 46 H 1.09001 * 109.47181 * 299.96595 * 25 24 23 47 47 H 1.08999 * 109.47728 * 59.96496 * 25 24 23 48 48 H 1.08995 * 109.47216 * 300.15416 * 26 24 23 49 49 H 1.08996 * 109.47442 * 60.15530 * 26 24 23 50 50 H 1.09007 * 109.47167 * 180.15838 * 26 24 23 51 51 H 1.07994 * 120.41642 * 180.23017 * 27 6 5 52 52 H 1.08000 * 119.49838 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1601 -1.2040 0.0005 5 6 1.4614 -2.4020 -0.1101 6 6 2.1735 -3.6015 -0.1037 7 6 1.4729 -4.9024 -0.2146 8 8 0.2618 -4.9342 -0.3078 9 7 2.1791 -6.0504 -0.2123 10 6 1.4864 -7.3366 -0.3225 11 1 0.6200 -7.2277 -0.9749 12 6 1.0259 -7.7883 1.0653 13 6 0.2724 -9.1163 0.9417 14 7 1.1312 -10.0845 0.2461 15 6 1.3953 -11.3080 0.8014 16 1 1.3768 -11.4294 1.8744 17 6 1.6865 -12.3923 -0.0149 18 7 1.2518 -12.4165 -1.2570 19 14 2.6954 -13.8172 0.6495 20 1 1.9944 -14.4208 1.8112 21 1 2.8659 -14.8408 -0.4128 22 1 4.0284 -13.3225 1.0780 23 6 1.7064 -9.7125 -1.0537 24 6 2.4395 -8.3798 -0.9103 25 6 2.9248 -7.9117 -2.2836 26 6 3.6390 -8.5586 0.0224 27 6 3.5683 -3.5434 0.0045 28 6 4.1842 -2.3132 0.1054 29 7 3.4795 -1.1980 0.1006 30 1 -0.3633 0.0000 1.0278 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8899 -0.5138 33 1 2.3792 1.5833 -1.0276 34 1 1.6085 2.0283 0.5139 35 1 3.1499 1.1383 0.5138 36 1 0.3849 -2.4034 -0.1967 37 1 3.1459 -6.0250 -0.1377 38 1 0.3657 -7.0338 1.4930 39 1 1.8935 -7.9211 1.7117 40 1 -0.6439 -8.9649 0.3712 41 1 0.0266 -9.4932 1.9345 42 1 0.6592 -11.7185 -1.5772 43 1 2.4086 -10.4812 -1.3761 44 1 0.9094 -9.6105 -1.7902 45 1 3.4472 -6.9607 -2.1797 46 1 3.6036 -8.6550 -2.7019 47 1 2.0698 -7.7860 -2.9479 48 1 3.2924 -8.8934 1.0000 49 1 4.3175 -9.3017 -0.3965 50 1 4.1619 -7.6080 0.1283 51 1 4.1546 -4.4503 0.0093 52 1 5.2598 -2.2622 0.1895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941071804.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:22 Heat of formation + Delta-G solvation = 16.858813 kcal Electronic energy + Delta-G solvation = -31386.563889 eV Core-core repulsion = 27386.166824 eV Total energy + Delta-G solvation = -4000.397065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.89529 -40.99619 -39.58730 -37.45671 -36.55754 -34.56018 -34.04230 -33.46611 -31.53310 -30.88362 -29.19157 -28.23735 -27.78527 -27.01110 -26.33601 -25.05888 -23.65276 -23.09621 -22.46387 -21.31190 -20.00614 -19.48728 -18.84713 -17.92696 -17.18223 -16.91813 -16.65739 -16.44426 -16.31478 -16.02827 -15.93871 -15.46186 -15.32011 -15.20686 -15.07128 -15.05242 -14.79889 -14.39240 -14.17152 -13.98600 -13.62868 -13.46322 -13.11798 -13.06651 -13.00040 -12.92127 -12.70063 -12.59376 -12.53533 -12.44253 -12.15043 -11.90900 -11.80687 -11.70385 -11.41807 -11.39197 -11.13936 -11.08944 -10.80137 -10.48819 -10.44600 -10.10310 -8.92225 -8.57245 -8.22367 -5.37028 -0.27564 0.28590 1.60719 1.67155 1.83070 1.84552 1.86171 2.06656 2.67320 2.91049 3.22978 3.42750 3.53917 3.57595 3.62141 3.85692 3.90894 3.97212 4.05992 4.11596 4.22842 4.31047 4.34808 4.41661 4.46967 4.49180 4.53052 4.68372 4.70148 4.76177 4.77475 4.79514 4.83330 4.85627 4.87538 4.94757 4.98465 5.01482 5.10429 5.12766 5.13655 5.21378 5.28090 5.36241 5.40507 5.49087 5.62039 5.86870 5.93540 6.28586 6.40744 6.43780 7.05817 7.05866 7.07598 7.79375 8.23757 9.02867 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026231 B = 0.002302 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.191687 B =12158.101329 C =12559.194208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.622 5.622 3 C 0.099 3.901 4 C 0.388 3.612 5 C -0.199 4.199 6 C -0.054 4.054 7 C 0.555 3.445 8 O -0.573 6.573 9 N -0.694 5.694 10 C 0.176 3.824 11 H 0.057 0.943 12 C -0.128 4.128 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.347 4.347 16 H 0.051 0.949 17 C -0.074 4.074 18 N -0.942 5.942 19 Si 1.112 2.888 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.275 1.275 23 C 0.173 3.827 24 C -0.081 4.081 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.201 4.201 28 C 0.151 3.849 29 N -0.542 5.542 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.136 0.864 37 H 0.413 0.587 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.005 0.995 41 H 0.055 0.945 42 H 0.252 0.748 43 H 0.056 0.944 44 H -0.008 1.008 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.050 0.950 49 H 0.047 0.953 50 H 0.075 0.925 51 H 0.161 0.839 52 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.575 26.470 2.342 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.336 5.336 3 C -0.043 4.043 4 C 0.153 3.847 5 C -0.225 4.225 6 C -0.065 4.065 7 C 0.343 3.657 8 O -0.453 6.453 9 N -0.346 5.346 10 C 0.072 3.928 11 H 0.075 0.925 12 C -0.168 4.168 13 C 0.020 3.980 14 N -0.333 5.333 15 C -0.477 4.477 16 H 0.069 0.931 17 C -0.270 4.270 18 N -0.584 5.584 19 Si 0.936 3.064 20 H -0.206 1.206 21 H -0.221 1.221 22 H -0.201 1.201 23 C 0.047 3.953 24 C -0.083 4.083 25 C -0.190 4.190 26 C -0.180 4.180 27 C -0.224 4.224 28 C -0.007 4.007 29 N -0.261 5.261 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.154 0.846 37 H 0.252 0.748 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.010 0.990 45 H 0.097 0.903 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.069 0.931 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.179 0.821 52 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.729 25.958 1.968 27.155 hybrid contribution -1.608 0.188 0.188 1.630 sum 6.121 26.146 2.155 26.939 Atomic orbital electron populations 1.21904 0.77176 1.04027 1.02374 1.46484 1.06080 1.02914 1.78134 1.21661 0.97553 0.83425 1.01700 1.18372 0.88615 0.86270 0.91433 1.21551 1.01660 0.90940 1.08385 1.20026 0.94898 0.92057 0.99542 1.18592 0.86620 0.84574 0.75959 1.90748 1.15453 1.87996 1.51128 1.45916 1.11279 1.04577 1.72819 1.20628 0.94427 0.81527 0.96267 0.92524 1.22241 1.00726 0.96760 0.97086 1.20940 0.91609 0.89439 0.96007 1.44295 1.54107 1.13812 1.21098 1.20154 1.47646 0.87672 0.92198 0.93130 1.27107 1.02122 1.01655 0.96126 1.70908 1.33288 1.34987 1.19258 0.82901 0.75777 0.73144 0.74547 1.20558 1.22084 1.20132 1.20754 0.94249 0.94044 0.86272 1.21158 0.96011 0.94471 0.96683 1.21767 1.00856 1.01751 0.94618 1.21706 0.95829 1.01325 0.99181 1.22251 0.92635 1.01339 1.06173 1.22983 1.01201 0.85646 0.90822 1.67122 1.05923 1.33219 1.19830 0.92249 0.88551 0.91665 0.93095 0.89633 0.91077 0.84602 0.74783 0.92298 0.90676 0.97719 0.92673 0.93792 0.92576 0.98969 0.90277 0.92194 0.93880 0.93095 0.93367 0.90587 0.82118 0.78579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 10.28 127.77 1.31 2.41 16 2 N -0.62 -10.57 3.39 -754.03 -2.56 -13.13 16 3 C 0.10 1.21 10.50 127.77 1.34 2.55 16 4 C 0.39 8.33 7.37 133.08 0.98 9.31 16 5 C -0.20 -4.77 8.84 22.79 0.20 -4.56 16 6 C -0.05 -1.28 5.90 -19.90 -0.12 -1.40 16 7 C 0.56 16.10 7.76 86.88 0.67 16.77 16 8 O -0.57 -21.35 16.10 -3.74 -0.06 -21.41 16 9 N -0.69 -17.96 4.25 -444.97 -1.89 -19.85 16 10 C 0.18 5.86 1.57 45.02 0.07 5.93 16 11 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.13 -4.56 5.31 30.67 0.16 -4.40 16 13 C 0.15 6.35 6.52 86.36 0.56 6.92 16 14 N -0.61 -30.10 2.30 -699.91 -1.61 -31.71 16 15 C -0.35 -19.02 9.49 84.03 0.80 -18.22 16 16 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 17 C -0.07 -4.13 4.68 84.86 0.40 -3.74 16 18 N -0.94 -57.01 12.41 21.65 0.27 -56.74 16 19 Si 1.11 50.11 29.99 68.60 2.06 52.17 16 20 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 23 C 0.17 7.96 3.33 86.22 0.29 8.25 16 24 C -0.08 -2.74 0.56 -52.25 -0.03 -2.77 16 25 C -0.13 -3.77 8.31 71.98 0.60 -3.17 16 26 C -0.12 -3.76 7.82 71.98 0.56 -3.20 16 27 C -0.20 -3.35 9.61 22.63 0.22 -3.13 16 28 C 0.15 2.32 11.16 84.61 0.94 3.27 16 29 N -0.54 -10.88 9.05 -193.40 -1.75 -12.63 16 30 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.10 0.73 8.07 -2.39 -0.02 0.71 16 32 H 0.06 0.95 5.97 -2.39 -0.01 0.93 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.65 8.07 -2.38 -0.02 0.63 16 35 H 0.07 1.01 7.30 -2.39 -0.02 0.99 16 36 H 0.14 3.38 5.70 -2.91 -0.02 3.36 16 37 H 0.41 8.01 4.80 -92.71 -0.44 7.57 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.56 6.34 -2.39 -0.02 2.54 16 40 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 42 H 0.25 15.71 6.71 -92.70 -0.62 15.09 16 43 H 0.06 2.91 6.30 -2.39 -0.02 2.89 16 44 H -0.01 -0.38 7.87 -2.39 -0.02 -0.40 16 45 H 0.08 1.74 7.36 -2.39 -0.02 1.73 16 46 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 48 H 0.05 1.80 5.97 -2.39 -0.01 1.78 16 49 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.63 6.58 -2.38 -0.02 1.62 16 51 H 0.16 1.72 6.53 -2.91 -0.02 1.70 16 52 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.51 399.89 4.06 -69.45 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.63 Total: 23.02 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 8.97 Total: 10.82 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -7.53 Total: -134.05 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.06 Total: 52.17 kcal Total: -73.51 4.06 -69.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941071804.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.305 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds