Wall clock time and date at job start Wed Apr 1 2020 04:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.52413 * 2 1 4 4 C 1.53185 * 109.49828 * 239.91530 * 2 1 3 5 5 N 1.46925 * 108.77918 * 294.68302 * 4 2 1 6 6 C 1.36936 * 120.62986 * 126.36537 * 5 4 2 7 7 H 1.07999 * 120.00208 * 331.88162 * 6 5 4 8 8 C 1.38815 * 119.99847 * 151.87316 * 6 5 4 9 9 N 1.31624 * 120.00008 * 343.06065 * 8 6 5 10 10 Si 1.86799 * 119.99951 * 163.05740 * 8 6 5 11 11 H 1.48494 * 109.47014 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47205 * 120.00042 * 10 8 6 13 13 H 1.48502 * 109.47227 * 240.00190 * 10 8 6 14 14 C 1.46925 * 118.73687 * 306.39650 * 5 4 2 15 15 C 1.53185 * 108.77777 * 53.60511 * 14 5 4 16 16 C 1.53039 * 109.31437 * 305.36465 * 15 14 5 17 17 H 1.09003 * 109.45657 * 301.35941 * 16 15 14 18 18 N 1.46495 * 109.46069 * 181.38784 * 16 15 14 19 19 C 1.34778 * 120.00442 * 85.00382 * 18 16 15 20 20 O 1.21608 * 119.99726 * 359.97438 * 19 18 16 21 21 C 1.47427 * 120.00249 * 180.27638 * 19 18 16 22 22 C 1.41471 * 126.48604 * 359.40473 * 21 19 18 23 23 N 1.30612 * 108.06686 * 179.81416 * 22 21 19 24 24 N 1.39617 * 108.87561 * 0.42686 * 23 22 21 25 25 C 1.34600 * 108.33960 * 359.75162 * 24 23 22 26 26 C 1.50809 * 124.57859 * 179.97438 * 25 24 23 27 27 C 1.53443 * 108.19899 * 344.35531 * 26 25 24 28 28 C 1.53166 * 109.12336 * 48.32566 * 27 26 25 29 29 C 1.46684 * 127.22938 * 179.79459 * 24 23 22 30 30 H 1.08993 * 109.47272 * 299.92229 * 1 2 3 31 31 H 1.09005 * 109.46488 * 59.92259 * 1 2 3 32 32 H 1.08993 * 109.47204 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47636 * 180.02562 * 3 2 1 34 34 H 1.09006 * 109.47374 * 300.07992 * 3 2 1 35 35 H 1.09001 * 109.47339 * 60.07721 * 3 2 1 36 36 H 1.09001 * 109.58364 * 174.89854 * 4 2 1 37 37 H 1.08998 * 109.70389 * 54.54648 * 4 2 1 38 38 H 0.96993 * 119.99887 * 179.97438 * 9 8 6 39 39 H 1.08993 * 109.58614 * 293.81333 * 14 5 4 40 40 H 1.09002 * 109.70131 * 173.46239 * 14 5 4 41 41 H 1.09000 * 109.49829 * 185.41120 * 15 14 5 42 42 H 1.08999 * 109.52755 * 65.33109 * 15 14 5 43 43 H 0.97007 * 120.00030 * 264.99462 * 18 16 15 44 44 H 1.07998 * 125.96095 * 359.95927 * 22 21 19 45 45 H 1.08997 * 109.71779 * 104.01075 * 26 25 24 46 46 H 1.09002 * 109.71856 * 224.65996 * 26 25 24 47 47 H 1.08997 * 109.52295 * 288.43385 * 27 26 25 48 48 H 1.09000 * 109.53207 * 168.21893 * 27 26 25 49 49 H 1.08999 * 109.45977 * 170.74196 * 28 27 26 50 50 H 1.08998 * 109.44778 * 50.78359 * 28 27 26 51 51 H 1.08994 * 109.57862 * 282.35356 * 29 24 23 52 52 H 1.09008 * 109.57332 * 42.74156 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2495 5 7 1.6516 -2.1382 -1.1694 6 6 0.9632 -2.7312 -2.1939 7 1 0.3194 -2.1381 -2.8265 8 6 1.0929 -4.0948 -2.4195 9 7 2.1011 -4.7562 -1.8917 10 14 -0.1633 -4.9910 -3.4721 11 1 -1.1905 -4.0282 -3.9442 12 1 0.5169 -5.6019 -4.6423 13 1 -0.8147 -6.0553 -2.6669 14 6 2.0140 -2.9040 0.0310 15 6 1.5030 -2.1557 1.2661 16 6 2.0407 -0.7230 1.2484 17 1 3.1305 -0.7444 1.2352 18 7 1.5810 -0.0144 2.4453 19 6 2.2704 -0.1214 3.5985 20 8 3.2739 -0.8067 3.6455 21 6 1.8043 0.5869 4.8045 22 6 0.6654 1.4203 4.9032 23 7 0.5881 1.8567 6.1318 24 7 1.6600 1.3408 6.8627 25 6 2.3974 0.5673 6.0443 26 6 3.6454 -0.1709 6.4589 27 6 4.1262 0.4127 7.7940 28 6 2.9408 0.4983 8.7602 29 6 1.9640 1.5762 8.2783 30 1 -0.3633 0.5126 0.8906 31 1 -0.3632 0.5151 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1313 1.4411 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9558 0.8907 36 1 3.1275 -0.6463 -1.2978 37 1 1.6029 -0.2738 -2.1401 38 1 2.1915 -5.7090 -2.0490 39 1 3.0979 -3.0043 0.0870 40 1 1.5573 -3.8928 -0.0122 41 1 1.8480 -2.6627 2.1672 42 1 0.4132 -2.1354 1.2547 43 1 0.7804 0.5321 2.4079 44 1 -0.0215 1.6529 4.1030 45 1 3.4225 -1.2309 6.5802 46 1 4.4181 -0.0414 5.7010 47 1 4.5351 1.4096 7.6297 48 1 4.8957 -0.2326 8.2178 49 1 3.3018 0.7548 9.7561 50 1 2.4312 -0.4646 8.7956 51 1 2.4176 2.5603 8.3957 52 1 1.0455 1.5232 8.8628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941138137.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:20 Heat of formation + Delta-G solvation = 46.906667 kcal Electronic energy + Delta-G solvation = -31780.042153 eV Core-core repulsion = 27780.948061 eV Total energy + Delta-G solvation = -3999.094092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.83464 -39.67753 -37.82465 -36.84595 -34.51995 -32.98266 -32.70898 -31.31396 -30.69054 -29.99104 -28.51080 -26.84080 -25.79042 -25.06019 -24.61520 -23.11368 -22.27849 -21.76134 -20.63617 -19.93982 -19.27214 -18.19425 -17.33251 -16.65522 -16.21912 -15.52897 -15.49631 -14.95782 -14.82251 -14.61723 -14.59855 -14.28870 -14.08547 -13.95412 -13.76118 -13.57465 -13.34335 -12.95736 -12.82478 -12.64430 -12.27519 -12.17432 -11.73421 -11.68718 -11.49950 -11.41467 -11.36523 -11.28269 -10.95495 -10.88800 -10.86199 -10.57696 -10.54300 -10.31613 -10.08902 -9.89802 -9.67103 -9.59378 -9.53976 -9.31735 -8.79724 -8.51037 -8.29879 -6.61451 -5.73985 -3.16490 1.45818 2.09361 2.10775 3.39667 3.47858 3.49545 3.58641 3.67673 3.99992 4.18432 4.29988 4.31119 4.52819 4.63117 4.76812 4.95217 4.96280 5.11820 5.16606 5.23701 5.32369 5.33006 5.36265 5.40787 5.48584 5.49878 5.64965 5.67297 5.75561 5.87296 5.93051 5.98530 6.03119 6.19965 6.22822 6.28398 6.34511 6.45008 6.51340 6.60732 6.65531 6.66469 6.75706 6.87331 6.90532 7.05092 7.10432 7.41149 7.45039 7.74230 7.84686 7.93089 8.49585 8.62778 9.25904 9.89451 10.46431 11.34350 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.002536 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.958753 B =11038.135946 C =11553.857870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 C -0.136 4.136 4 C 0.160 3.840 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.901 5.901 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.174 3.826 15 C -0.149 4.149 16 C 0.167 3.833 17 H 0.081 0.919 18 N -0.717 5.717 19 C 0.591 3.409 20 O -0.549 6.549 21 C -0.288 4.288 22 C 0.080 3.920 23 N -0.299 5.299 24 N -0.363 5.363 25 C 0.156 3.844 26 C -0.060 4.060 27 C -0.130 4.130 28 C -0.139 4.139 29 C 0.131 3.869 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.019 0.981 37 H 0.057 0.943 38 H 0.253 0.747 39 H 0.019 0.981 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.392 0.608 44 H 0.188 0.812 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.093 0.907 50 H 0.078 0.922 51 H 0.086 0.914 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 14.140 20.449 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.194 4.194 4 C 0.032 3.968 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.197 4.197 9 N -0.545 5.545 10 Si 0.730 3.270 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.048 3.952 15 C -0.189 4.189 16 C 0.063 3.937 17 H 0.099 0.901 18 N -0.367 5.367 19 C 0.378 3.622 20 O -0.428 6.428 21 C -0.303 4.303 22 C -0.108 4.108 23 N -0.118 5.118 24 N -0.144 5.144 25 C 0.024 3.976 26 C -0.099 4.099 27 C -0.167 4.167 28 C -0.177 4.177 29 C 0.010 3.990 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.106 0.894 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.227 0.773 44 H 0.205 0.795 45 H 0.115 0.885 46 H 0.126 0.874 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.112 0.888 50 H 0.096 0.904 51 H 0.104 0.896 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.597 14.238 21.410 25.719 hybrid contribution -0.740 -0.655 -1.080 1.464 sum -0.143 13.583 20.329 24.450 Atomic orbital electron populations 1.21786 0.94519 1.03027 0.99468 1.21348 0.96376 0.94579 0.96822 1.21800 1.00838 0.95909 1.00858 1.20905 0.96185 0.86188 0.93497 1.44049 1.65057 1.05405 1.16544 1.19187 1.18469 0.91647 1.08589 0.91680 1.25046 0.97149 0.98201 0.99274 1.70047 1.28278 1.08210 1.47983 0.86268 0.81223 0.79778 0.79761 1.20308 1.21831 1.21658 1.20737 0.96848 0.95530 0.82074 1.22623 1.00769 0.94947 1.00598 1.20957 0.99206 0.91600 0.81889 0.90138 1.46076 1.29450 1.50887 1.10314 1.17164 0.82974 0.80105 0.81979 1.90749 1.25909 1.41233 1.84911 1.19986 1.02508 1.12593 0.95192 1.24091 0.96769 0.95125 0.94792 1.77078 1.07104 1.22557 1.05060 1.48547 1.19493 1.36714 1.09630 1.21402 0.94147 0.92339 0.89674 1.20589 0.92526 0.99170 0.97581 1.21762 0.97740 1.02401 0.94830 1.22006 0.96270 0.99185 1.00282 1.21899 1.00525 1.00247 0.76289 0.94752 0.93199 0.90619 0.92994 0.92826 0.93392 0.96323 0.92455 0.93720 0.96288 0.89384 0.92920 0.92292 0.77335 0.79534 0.88544 0.87439 0.91138 0.89820 0.88832 0.90378 0.89583 0.88714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 7.83 37.16 0.29 -1.74 16 2 C -0.09 -1.46 0.56 -154.39 -0.09 -1.54 16 3 C -0.14 -1.87 8.31 37.16 0.31 -1.56 16 4 C 0.16 3.26 5.19 -3.71 -0.02 3.24 16 5 N -0.59 -14.35 2.43 -172.33 -0.42 -14.77 16 6 C -0.25 -6.69 9.58 -15.06 -0.14 -6.83 16 7 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 8 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 9 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 10 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.17 4.21 5.30 -3.71 -0.02 4.19 16 15 C -0.15 -2.98 5.31 -26.62 -0.14 -3.12 16 16 C 0.17 2.92 1.57 -67.89 -0.11 2.81 16 17 H 0.08 1.60 7.58 -51.93 -0.39 1.21 16 18 N -0.72 -10.52 4.28 -54.84 -0.23 -10.75 16 19 C 0.59 9.33 7.78 -12.52 -0.10 9.23 16 20 O -0.55 -10.35 15.09 5.27 0.08 -10.27 16 21 C -0.29 -3.89 6.12 -105.21 -0.64 -4.53 16 22 C 0.08 0.94 11.51 -16.84 -0.19 0.75 16 23 N -0.30 -3.72 12.54 30.93 0.39 -3.34 16 24 N -0.36 -3.95 4.01 -56.39 -0.23 -4.18 16 25 C 0.16 1.88 6.66 -81.61 -0.54 1.34 16 26 C -0.06 -0.59 5.37 -27.60 -0.15 -0.74 16 27 C -0.13 -0.81 5.98 -26.42 -0.16 -0.97 16 28 C -0.14 -0.70 5.93 -26.52 -0.16 -0.86 16 29 C 0.13 0.88 7.27 -3.82 -0.03 0.85 16 30 H 0.03 0.43 6.58 -51.93 -0.34 0.09 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 1.39 5.97 -51.93 -0.31 1.08 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.59 7.36 -51.93 -0.38 0.20 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 43 H 0.39 4.80 5.63 -40.82 -0.23 4.57 16 44 H 0.19 1.63 7.51 -52.49 -0.39 1.24 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.11 1.21 7.47 -51.93 -0.39 0.82 16 47 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 50 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 51 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 52 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -32.83 396.07 -9.36 -42.19 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -8.54 Total: 3.66 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.97 Total: 0.47 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.13 Total: -58.63 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.83 -9.36 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941138137.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.096 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds