Wall clock time and date at job start Wed Apr 1 2020 04:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.49875 * 2 1 4 4 C 1.52768 * 109.56311 * 240.03181 * 2 1 3 5 5 N 1.46928 * 109.00701 * 185.55450 * 4 2 1 6 6 C 1.36934 * 120.63009 * 233.58630 * 5 4 2 7 7 H 1.08001 * 120.00050 * 152.22348 * 6 5 4 8 8 C 1.38809 * 119.99751 * 332.21557 * 6 5 4 9 9 N 1.31614 * 120.00350 * 335.03508 * 8 6 5 10 10 Si 1.86804 * 119.99809 * 155.03104 * 8 6 5 11 11 H 1.48500 * 109.46888 * 60.00458 * 10 8 6 12 12 H 1.48503 * 109.46987 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47223 * 300.00100 * 10 8 6 14 14 C 1.46933 * 118.73761 * 53.30366 * 5 4 2 15 15 C 1.53191 * 108.78000 * 306.64597 * 14 5 4 16 16 C 1.53040 * 109.49751 * 120.06690 * 2 1 3 17 17 H 1.08999 * 109.46453 * 61.29349 * 16 2 1 18 18 N 1.46504 * 109.44622 * 301.33015 * 16 2 1 19 19 C 1.34780 * 119.99734 * 154.94366 * 18 16 2 20 20 O 1.21598 * 120.00341 * 359.97438 * 19 18 16 21 21 C 1.47429 * 119.99742 * 180.02562 * 19 18 16 22 22 C 1.41300 * 126.41308 * 359.67713 * 21 19 18 23 23 N 1.30450 * 108.01870 * 179.85870 * 22 21 19 24 24 N 1.39942 * 108.89663 * 0.41173 * 23 22 21 25 25 C 1.46500 * 125.75120 * 179.73731 * 24 23 22 26 26 C 1.53006 * 109.47134 * 304.99658 * 25 24 23 27 27 C 1.52996 * 117.50016 * 243.75169 * 26 25 24 28 28 C 1.52996 * 117.49749 * 175.08554 * 26 25 24 29 29 C 1.34255 * 108.48996 * 359.73413 * 24 23 22 30 30 H 1.09002 * 109.47461 * 299.93715 * 1 2 3 31 31 H 1.09001 * 109.47181 * 59.93414 * 1 2 3 32 32 H 1.08999 * 109.47728 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47334 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.46960 * 300.06439 * 3 2 1 35 35 H 1.08996 * 109.47186 * 60.06453 * 3 2 1 36 36 H 1.08992 * 109.51015 * 65.67011 * 4 2 1 37 37 H 1.08996 * 109.43271 * 305.38308 * 4 2 1 38 38 H 0.97008 * 120.00026 * 354.25254 * 9 8 6 39 39 H 1.09001 * 109.57835 * 66.43808 * 14 5 4 40 40 H 1.08999 * 109.58026 * 186.71206 * 14 5 4 41 41 H 1.08992 * 109.49667 * 174.58454 * 15 14 5 42 42 H 1.09002 * 109.49245 * 294.65111 * 15 14 5 43 43 H 0.97000 * 119.99839 * 334.93704 * 18 16 2 44 44 H 1.07991 * 125.98772 * 0.02562 * 22 21 19 45 45 H 1.08998 * 109.47561 * 64.99728 * 25 24 23 46 46 H 1.08997 * 109.47131 * 184.99718 * 25 24 23 47 47 H 1.08999 * 115.54762 * 29.41876 * 26 25 24 48 48 H 1.09004 * 117.49620 * 359.97438 * 27 26 25 49 49 H 1.08991 * 117.49970 * 145.02376 * 27 26 25 50 50 H 1.09000 * 117.49821 * 214.97991 * 28 26 25 51 51 H 1.08996 * 117.50099 * 359.97438 * 28 26 25 52 52 H 1.08000 * 126.28485 * 179.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0415 -0.7191 -1.2470 5 7 3.5046 -0.8295 -1.1694 6 6 4.2936 -0.3791 -2.1940 7 1 5.2997 -0.0421 -1.9927 8 6 3.8002 -0.3558 -3.4912 9 7 2.8306 -1.1740 -3.8414 10 14 4.5124 0.8370 -4.7400 11 1 5.9622 0.5659 -4.9125 12 1 3.8179 0.6645 -6.0413 13 1 4.3228 2.2291 -4.2590 14 6 4.1052 -1.4267 0.0312 15 6 3.5708 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6967 -1.7570 1.2358 18 7 1.5264 -0.0520 2.4451 19 6 1.3972 -0.7371 3.5986 20 8 1.7070 -1.9120 3.6460 21 6 0.8790 -0.0622 4.8026 22 6 0.4855 1.2912 4.9017 23 7 0.0834 1.5061 6.1239 24 7 0.2076 0.3205 6.8569 25 6 -0.1349 0.1486 8.2709 26 6 0.6173 1.1855 9.1076 27 6 1.6388 0.6681 10.1223 28 6 0.3058 1.2462 10.6043 29 6 0.6934 -0.6326 6.0458 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1307 1.4417 -0.0005 34 1 1.6766 1.9566 -0.8894 35 1 1.6785 1.9559 0.8905 36 1 1.7646 -0.1502 -2.1345 37 1 1.6021 -1.7153 -1.2971 38 1 2.5176 -1.8495 -3.2194 39 1 3.8375 -2.4818 0.0874 40 1 5.1897 -1.3269 -0.0146 41 1 3.9333 -1.1891 2.1674 42 1 3.9164 0.3390 1.2542 43 1 1.2790 0.8852 2.4072 44 1 0.5104 2.0193 4.1045 45 1 -1.2082 0.2838 8.4039 46 1 0.1478 -0.8533 8.5940 47 1 0.8417 2.1246 8.6017 48 1 1.7747 -0.4110 10.1942 49 1 2.5349 1.2670 10.2844 50 1 0.3256 2.2252 11.0832 51 1 -0.4353 0.5478 10.9928 52 1 0.9011 -1.6573 6.3165 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941148415.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:54 Heat of formation + Delta-G solvation = 62.017773 kcal Electronic energy + Delta-G solvation = -30958.802673 eV Core-core repulsion = 26960.363847 eV Total energy + Delta-G solvation = -3998.438825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.41425 -41.16555 -39.39302 -38.42375 -36.44957 -34.44995 -34.01242 -33.66671 -31.56663 -30.77002 -28.38094 -28.17018 -27.74075 -26.52987 -24.42029 -23.34762 -23.17485 -22.57675 -22.39846 -21.46773 -20.81124 -19.77497 -19.43564 -18.74908 -17.28141 -17.04460 -16.68412 -16.31709 -16.10077 -15.86884 -15.78151 -15.45153 -15.38801 -15.17528 -15.02609 -14.76289 -14.70463 -14.20789 -13.96428 -13.90801 -13.69848 -13.59087 -12.96182 -12.88838 -12.76095 -12.65487 -12.49285 -12.42392 -12.41812 -12.12729 -12.03580 -11.89656 -11.75765 -11.65620 -11.44872 -11.35213 -11.11941 -11.08002 -10.83922 -10.56046 -10.42827 -10.05457 -9.61711 -8.89548 -8.20474 -5.34868 0.53527 1.16659 1.34057 1.61058 1.67906 1.86693 2.31150 2.50200 2.68584 2.80413 3.24887 3.30808 3.54264 3.65983 3.75811 3.79476 3.90935 3.93158 3.98553 4.03265 4.11240 4.16308 4.25586 4.29347 4.36286 4.49242 4.50936 4.58671 4.62421 4.71254 4.75936 4.79316 4.81196 4.88720 4.94434 4.97703 4.98319 5.05386 5.15759 5.16438 5.16897 5.20670 5.26661 5.32180 5.39508 5.41774 5.59137 5.65438 5.85863 5.88639 6.42592 6.49730 6.70022 7.08297 7.35574 7.81665 8.26395 9.04577 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.002075 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.653963 B =13488.088128 C =13569.157587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.082 4.082 3 C -0.122 4.122 4 C 0.174 3.826 5 N -0.609 5.609 6 C -0.346 4.346 7 H 0.050 0.950 8 C -0.075 4.075 9 N -0.943 5.943 10 Si 1.112 2.888 11 H -0.279 1.279 12 H -0.294 1.294 13 H -0.276 1.276 14 C 0.146 3.854 15 C -0.127 4.127 16 C 0.180 3.820 17 H 0.054 0.946 18 N -0.703 5.703 19 C 0.593 3.407 20 O -0.594 6.594 21 C -0.312 4.312 22 C 0.085 3.915 23 N -0.315 5.315 24 N -0.353 5.353 25 C 0.156 3.844 26 C -0.184 4.184 27 C -0.180 4.180 28 C -0.156 4.156 29 C 0.133 3.867 30 H 0.078 0.922 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.054 0.946 37 H -0.008 1.008 38 H 0.252 0.748 39 H 0.005 0.995 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.409 0.591 44 H 0.212 0.788 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.115 0.885 52 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 6.866 28.405 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 C -0.180 4.180 4 C 0.048 3.952 5 N -0.333 5.333 6 C -0.476 4.476 7 H 0.068 0.932 8 C -0.271 4.271 9 N -0.585 5.585 10 Si 0.936 3.064 11 H -0.205 1.205 12 H -0.221 1.221 13 H -0.202 1.202 14 C 0.020 3.980 15 C -0.167 4.167 16 C 0.075 3.925 17 H 0.073 0.927 18 N -0.354 5.354 19 C 0.383 3.617 20 O -0.476 6.476 21 C -0.327 4.327 22 C -0.103 4.103 23 N -0.135 5.135 24 N -0.131 5.131 25 C 0.036 3.964 26 C -0.203 4.203 27 C -0.217 4.217 28 C -0.193 4.193 29 C -0.020 4.020 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.010 0.990 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.247 0.753 44 H 0.228 0.772 45 H 0.123 0.877 46 H 0.145 0.855 47 H 0.113 0.887 48 H 0.128 0.872 49 H 0.110 0.890 50 H 0.119 0.881 51 H 0.134 0.866 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.615 7.482 27.870 30.115 hybrid contribution 0.669 -1.288 0.437 1.516 sum -7.946 6.194 28.307 30.046 Atomic orbital electron populations 1.21746 0.93058 1.01479 1.02538 1.21156 0.96160 0.96960 0.94130 1.21694 1.01265 0.93686 1.01309 1.20738 0.83247 0.95275 0.95950 1.44290 1.01700 1.70169 1.17162 1.20155 0.99224 1.39730 0.88496 0.93192 1.27100 0.99843 1.01802 0.98331 1.70903 1.32539 1.17758 1.37268 0.82900 0.75136 0.74644 0.73673 1.20529 1.22056 1.20249 1.20947 0.96680 0.93738 0.86637 1.22229 0.95652 1.01415 0.97405 1.20513 0.92872 0.95622 0.83490 0.92730 1.45770 1.65847 1.14777 1.09023 1.17582 0.76237 0.85251 0.82675 1.90743 1.53475 1.17828 1.85598 1.20176 1.21207 0.96112 0.95181 1.24430 0.95288 0.95181 0.95369 1.77111 1.25155 1.05829 1.05381 1.48735 1.47155 1.06623 1.10546 1.21743 1.01225 1.00796 0.72604 1.22439 1.04813 1.00686 0.92353 1.23217 0.93871 1.02091 1.02534 1.23083 0.99115 1.03703 0.93443 1.23275 0.92907 0.96425 0.89400 0.90313 0.92445 0.93870 0.93184 0.93591 0.90658 0.92780 0.98987 0.93798 0.97707 0.92812 0.92288 0.90983 0.75325 0.77202 0.87729 0.85510 0.88684 0.87243 0.89042 0.88132 0.86623 0.77920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 8.31 71.98 0.60 -3.26 16 2 C -0.08 -2.86 0.56 -52.25 -0.03 -2.89 16 3 C -0.12 -3.90 7.82 71.98 0.56 -3.33 16 4 C 0.17 8.16 3.33 86.22 0.29 8.45 16 5 N -0.61 -30.58 2.30 -699.91 -1.61 -32.19 16 6 C -0.35 -19.23 9.49 84.03 0.80 -18.44 16 7 H 0.05 2.78 7.94 -2.91 -0.02 2.76 16 8 C -0.07 -4.22 4.68 84.86 0.40 -3.82 16 9 N -0.94 -57.59 12.41 21.65 0.27 -57.32 16 10 Si 1.11 50.77 29.99 68.60 2.06 52.83 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 13 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 14 C 0.15 6.46 6.52 86.36 0.56 7.02 16 15 C -0.13 -4.63 5.31 30.67 0.16 -4.47 16 16 C 0.18 6.14 1.57 45.02 0.07 6.21 16 17 H 0.05 2.19 7.57 -2.39 -0.02 2.17 16 18 N -0.70 -18.76 4.28 -445.66 -1.91 -20.67 16 19 C 0.59 17.14 7.78 86.66 0.67 17.82 16 20 O -0.59 -21.95 16.56 -4.02 -0.07 -22.02 16 21 C -0.31 -7.01 6.13 -20.15 -0.12 -7.14 16 22 C 0.08 1.61 11.50 85.65 0.99 2.59 16 23 N -0.31 -6.33 12.14 -56.27 -0.68 -7.02 16 24 N -0.35 -5.80 3.65 -346.30 -1.26 -7.07 16 25 C 0.16 1.43 6.77 86.38 0.58 2.02 16 26 C -0.18 -1.92 5.92 -10.79 -0.06 -1.98 16 27 C -0.18 -1.49 10.18 30.62 0.31 -1.17 16 28 C -0.16 -1.01 10.26 30.62 0.31 -0.70 16 29 C 0.13 2.46 11.25 84.27 0.95 3.41 16 30 H 0.08 1.84 7.36 -2.39 -0.02 1.82 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.05 1.83 5.98 -2.38 -0.01 1.82 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.73 6.58 -2.39 -0.02 1.72 16 36 H 0.05 2.86 6.30 -2.39 -0.02 2.84 16 37 H -0.01 -0.40 7.87 -2.39 -0.02 -0.41 16 38 H 0.25 15.87 6.71 -92.70 -0.62 15.24 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.54 6.34 -2.39 -0.02 2.52 16 43 H 0.41 8.44 5.61 -92.71 -0.52 7.92 16 44 H 0.21 2.65 7.50 -2.92 -0.02 2.63 16 45 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.13 0.49 7.79 -2.39 -0.02 0.47 16 47 H 0.09 1.48 7.90 -2.39 -0.02 1.46 16 48 H 0.11 0.64 8.03 -2.38 -0.02 0.62 16 49 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 50 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 51 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 52 H 0.20 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -74.78 408.77 4.38 -70.40 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.54 Total: 22.74 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 7.04 Total: 0.31 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -5.20 Total: -124.27 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.02 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.06 Total: 52.83 kcal Total: -74.78 4.38 -70.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941148415.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.421 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds