Wall clock time and date at job start Wed Apr 1 2020 04:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.49480 * 2 1 4 4 C 1.53193 * 109.49406 * 239.90713 * 2 1 3 5 5 N 1.46930 * 108.77384 * 185.41349 * 4 2 1 6 6 C 1.36934 * 120.63109 * 233.58364 * 5 4 2 7 7 H 1.08000 * 120.00077 * 152.59590 * 6 5 4 8 8 C 1.38809 * 119.99970 * 332.59802 * 6 5 4 9 9 N 1.31620 * 119.99772 * 159.31237 * 8 6 5 10 10 Si 1.86801 * 120.00154 * 339.31588 * 8 6 5 11 11 H 1.48495 * 109.47259 * 92.94960 * 10 8 6 12 12 H 1.48499 * 109.47254 * 212.95226 * 10 8 6 13 13 H 1.48505 * 109.46839 * 332.95190 * 10 8 6 14 14 C 1.46932 * 118.73842 * 53.60647 * 5 4 2 15 15 C 1.53201 * 108.77372 * 306.39321 * 14 5 4 16 16 C 1.53035 * 109.31175 * 54.63624 * 15 14 5 17 17 H 1.08992 * 109.45479 * 58.64977 * 16 15 14 18 18 N 1.46500 * 109.45642 * 178.61559 * 16 15 14 19 19 C 1.34783 * 120.00072 * 275.06577 * 18 16 15 20 20 O 1.21281 * 119.99251 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00241 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.47767 * 59.98625 * 21 19 18 23 23 C 1.53110 * 109.47513 * 180.02562 * 21 19 18 24 24 C 1.53355 * 109.53433 * 189.99080 * 23 21 19 25 25 C 1.50869 * 108.41234 * 310.00922 * 24 23 21 26 26 N 1.33575 * 128.03090 * 196.75077 * 25 24 23 27 27 C 1.30752 * 109.14069 * 179.97438 * 26 25 24 28 28 N 1.35309 * 108.77179 * 0.25215 * 27 26 25 29 29 H 0.96998 * 126.49838 * 180.02562 * 28 27 26 30 30 C 1.35027 * 123.98476 * 16.71184 * 25 24 23 31 31 C 1.50654 * 124.45315 * 0.11201 * 30 25 24 32 32 H 1.09004 * 109.46970 * 299.93376 * 1 2 3 33 33 H 1.09001 * 109.47244 * 59.92971 * 1 2 3 34 34 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47007 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47911 * 300.06517 * 3 2 1 37 37 H 1.08998 * 109.47079 * 60.06942 * 3 2 1 38 38 H 1.09002 * 109.58493 * 305.19567 * 4 2 1 39 39 H 1.08990 * 109.58814 * 65.62538 * 4 2 1 40 40 H 0.97004 * 119.99704 * 179.97438 * 9 8 6 41 41 H 1.08992 * 109.58613 * 66.17613 * 14 5 4 42 42 H 1.09000 * 109.58609 * 186.46282 * 14 5 4 43 43 H 1.08999 * 109.49389 * 294.68008 * 15 14 5 44 44 H 1.08994 * 109.49457 * 174.58795 * 15 14 5 45 45 H 0.97003 * 120.00172 * 95.06967 * 18 16 15 46 46 H 1.09007 * 109.46475 * 69.97721 * 23 21 19 47 47 H 1.08999 * 109.46280 * 310.01101 * 23 21 19 48 48 H 1.09001 * 109.67702 * 190.27468 * 24 23 21 49 49 H 1.09001 * 109.67185 * 69.73914 * 24 23 21 50 50 H 1.08007 * 125.61194 * 180.02562 * 27 26 25 51 51 H 1.09007 * 109.67475 * 136.17302 * 31 30 25 52 52 H 1.08995 * 109.67932 * 256.72410 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0412 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1695 6 6 4.2935 -0.3799 -2.1945 7 1 5.3003 -0.0445 -1.9939 8 6 3.7992 -0.3552 -3.4913 9 7 4.3571 0.4240 -4.3935 10 14 2.3421 -1.4277 -3.9561 11 1 1.0856 -0.6531 -3.7941 12 1 2.4775 -1.8613 -5.3699 13 1 2.3048 -2.6216 -3.0736 14 6 4.1053 -1.4267 0.0310 15 6 3.5708 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6969 -1.7570 1.2356 18 7 1.5266 -0.0523 2.4453 19 6 1.3985 -0.7373 3.5990 20 8 1.7095 -1.9086 3.6463 21 6 0.8691 -0.0478 4.8299 22 1 -0.1355 0.3266 4.6330 23 6 0.8248 -1.0426 5.9930 24 6 0.0605 -0.4227 7.1691 25 6 0.6254 0.9511 7.4335 26 7 0.4792 1.7045 8.5267 27 6 1.1257 2.8291 8.3619 28 7 1.7045 2.8233 7.1389 29 1 2.2454 3.5302 6.7533 30 6 1.3920 1.6336 6.5562 31 6 1.7884 1.1245 5.1948 32 1 -0.3633 0.5128 0.8906 33 1 -0.3634 0.5149 -0.8894 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1306 1.4418 -0.0005 36 1 1.6766 1.9567 -0.8893 37 1 1.6785 1.9559 0.8906 38 1 1.6052 -1.7219 -1.2976 39 1 1.7637 -0.1585 -2.1388 40 1 4.0118 0.4410 -5.2999 41 1 3.8375 -2.4817 0.0873 42 1 5.1897 -1.3269 -0.0147 43 1 3.9160 0.3392 1.2539 44 1 3.9334 -1.1891 2.1673 45 1 1.2782 0.8846 2.4074 46 1 1.8414 -1.2810 6.3059 47 1 0.3205 -1.9541 5.6723 48 1 0.1816 -1.0461 8.0550 49 1 -0.9972 -0.3425 6.9180 50 1 1.1846 3.6320 9.0819 51 1 1.6783 1.9209 4.4588 52 1 2.8240 0.7851 5.2170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941150789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:44 Heat of formation + Delta-G solvation = 30.437694 kcal Electronic energy + Delta-G solvation = -31920.884121 eV Core-core repulsion = 27921.075881 eV Total energy + Delta-G solvation = -3999.808240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.59520 -40.36779 -38.67148 -36.32425 -34.81131 -33.53793 -33.01067 -32.09349 -30.58858 -29.87579 -29.30882 -26.96755 -26.28498 -25.29893 -24.21408 -23.21300 -22.31078 -21.84680 -20.58171 -20.29237 -19.24277 -18.61554 -18.13364 -17.31911 -16.63544 -15.89745 -15.80856 -15.29849 -15.04976 -14.74179 -14.40805 -14.20909 -14.11784 -14.00280 -13.76569 -13.67367 -13.56172 -13.30669 -12.96227 -12.75450 -12.48781 -12.23262 -12.04093 -11.83153 -11.77157 -11.73814 -11.32345 -11.26846 -11.17156 -11.13396 -10.79235 -10.71344 -10.46734 -10.19943 -10.19666 -10.14702 -9.95241 -9.84668 -9.62517 -9.45188 -8.79909 -8.64167 -8.46699 -7.00263 -5.98158 -3.33618 1.69072 2.54761 2.80597 2.84295 3.22407 3.28526 3.46906 3.49827 4.09859 4.37075 4.43775 4.49919 4.51979 4.81846 4.87184 4.88702 4.92782 4.97190 5.07888 5.19094 5.21872 5.24277 5.30958 5.39399 5.42736 5.59809 5.67421 5.69943 5.75255 5.81428 5.83471 5.88864 5.98281 5.99946 6.06136 6.08814 6.19209 6.24219 6.30240 6.38142 6.43957 6.45593 6.55172 6.61140 6.66130 6.74342 6.78863 6.97669 7.03956 7.58801 7.76837 7.92850 8.28172 8.29687 8.90835 9.69063 10.06780 11.17766 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.002536 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.542743 B =11037.160138 C =11312.964427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.140 3.860 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.086 0.914 8 C 0.025 3.975 9 N -0.908 5.908 10 Si 0.878 3.122 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.150 3.850 15 C -0.144 4.144 16 C 0.163 3.837 17 H 0.082 0.918 18 N -0.720 5.720 19 C 0.516 3.484 20 O -0.536 6.536 21 C -0.100 4.100 22 H 0.100 0.900 23 C -0.098 4.098 24 C -0.035 4.035 25 C 0.007 3.993 26 N -0.487 5.487 27 C 0.176 3.824 28 N -0.560 5.560 29 H 0.420 0.580 30 C -0.025 4.025 31 C -0.033 4.033 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.026 0.974 39 H 0.077 0.923 40 H 0.262 0.738 41 H 0.024 0.976 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.395 0.605 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.208 0.792 51 H 0.079 0.921 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 5.716 22.011 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.186 4.186 4 C 0.013 3.987 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.708 3.292 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.024 3.976 15 C -0.184 4.184 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.371 5.371 19 C 0.301 3.699 20 O -0.412 6.412 21 C -0.122 4.122 22 H 0.119 0.881 23 C -0.136 4.136 24 C -0.073 4.073 25 C -0.123 4.123 26 N -0.205 5.205 27 C -0.106 4.106 28 N -0.163 5.163 29 H 0.258 0.742 30 C -0.141 4.141 31 C -0.071 4.071 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.044 0.956 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.042 0.958 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.230 0.770 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.225 0.775 51 H 0.097 0.903 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.484 4.665 22.571 24.559 hybrid contribution -0.234 0.785 -1.259 1.502 sum -8.718 5.450 21.312 23.662 Atomic orbital electron populations 1.21833 0.95120 1.01549 1.01253 1.21355 0.94574 0.97080 0.96134 1.21758 1.03064 0.94022 0.99763 1.21404 0.84986 0.96965 0.95321 1.44364 1.00538 1.69946 1.17748 1.18892 0.98496 1.36018 0.85083 0.89668 1.25264 0.97892 0.98610 0.95672 1.69834 1.43247 1.37881 1.04112 0.87028 0.82650 0.82627 0.76870 1.21627 1.23169 1.19473 1.20899 0.97283 0.94196 0.85266 1.22433 0.94632 1.01902 0.99393 1.20954 0.93948 0.96748 0.82461 0.89963 1.46334 1.65928 1.14423 1.10417 1.20418 0.78028 0.87167 0.84285 1.90711 1.49544 1.16238 1.84751 1.21330 1.00592 0.96158 0.94139 0.88150 1.21429 1.02028 0.97631 0.92536 1.19988 0.99042 0.89735 0.98516 1.20584 1.02534 0.98157 0.91026 1.69989 1.21685 1.03081 1.25795 1.25050 0.98549 0.99334 0.87699 1.42947 1.41650 1.16007 1.15679 0.74175 1.20834 1.06332 0.88447 0.98479 1.19992 1.00011 0.96655 0.90474 0.93130 0.92509 0.92928 0.90596 0.92662 0.94789 0.95597 0.90479 0.92799 0.95774 0.91638 0.91467 0.92323 0.76950 0.90914 0.89758 0.90042 0.90523 0.77541 0.90262 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.31 37.16 0.31 -1.61 16 2 C -0.09 -1.42 0.56 -154.39 -0.09 -1.50 16 3 C -0.13 -1.98 7.83 37.16 0.29 -1.68 16 4 C 0.14 2.89 2.88 -3.71 -0.01 2.88 16 5 N -0.60 -13.59 2.21 -172.31 -0.38 -13.97 16 6 C -0.26 -6.87 10.03 -15.06 -0.15 -7.02 16 7 H 0.09 2.44 8.06 -52.49 -0.42 2.02 16 8 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 9 N -0.91 -27.13 13.97 55.49 0.78 -26.36 16 10 Si 0.88 21.93 24.35 -169.99 -4.14 17.79 16 11 H -0.29 -6.90 6.62 56.52 0.37 -6.53 16 12 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 13 H -0.27 -6.69 6.64 56.52 0.38 -6.31 16 14 C 0.15 2.90 6.52 -3.70 -0.02 2.87 16 15 C -0.14 -2.31 5.31 -26.61 -0.14 -2.45 16 16 C 0.16 2.46 1.57 -67.89 -0.11 2.35 16 17 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 18 N -0.72 -8.44 4.19 -53.77 -0.23 -8.66 16 19 C 0.52 6.29 7.10 -10.99 -0.08 6.21 16 20 O -0.54 -8.67 15.48 5.56 0.09 -8.58 16 21 C -0.10 -0.90 2.50 -91.52 -0.23 -1.13 16 22 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 23 C -0.10 -0.93 4.64 -26.49 -0.12 -1.05 16 24 C -0.03 -0.32 6.30 -27.62 -0.17 -0.49 16 25 C 0.01 0.07 6.98 -82.89 -0.58 -0.51 16 26 N -0.49 -5.43 11.25 -10.74 -0.12 -5.55 16 27 C 0.18 1.35 13.05 -89.92 -1.17 0.17 16 28 N -0.56 -3.70 6.14 -10.28 -0.06 -3.76 16 29 H 0.42 1.42 8.96 -40.82 -0.37 1.05 16 30 C -0.02 -0.21 7.08 -81.85 -0.58 -0.79 16 31 C -0.03 -0.25 5.43 -27.70 -0.15 -0.40 16 32 H 0.05 0.57 7.36 -51.93 -0.38 0.19 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.34 5.97 -51.93 -0.31 1.03 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 38 H 0.03 0.55 7.08 -51.93 -0.37 0.19 16 39 H 0.08 1.76 4.50 -51.93 -0.23 1.53 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 43 H 0.07 1.07 6.34 -51.93 -0.33 0.75 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.40 3.76 6.33 -40.82 -0.26 3.51 16 46 H 0.07 0.76 8.12 -51.92 -0.42 0.34 16 47 H 0.08 0.84 7.77 -51.93 -0.40 0.44 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.21 0.74 8.06 -52.48 -0.42 0.32 16 51 H 0.08 0.49 7.90 -51.93 -0.41 0.07 16 52 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 LS Contribution 389.33 15.07 5.87 5.87 Total: -1.00 -33.87 389.33 -9.76 -43.63 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.47 Total: 3.16 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.10 Total: -3.56 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.01 Total: -58.30 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.14 Total: 17.79 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.87 -9.76 -43.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941150789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.070 kcal (2) G-P(sol) polarization free energy of solvation -33.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds