Wall clock time and date at job start Wed Apr 1 2020 04:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.49480 * 2 1 4 4 C 1.53193 * 109.49406 * 239.90713 * 2 1 3 5 5 N 1.46930 * 108.77384 * 185.41349 * 4 2 1 6 6 C 1.36934 * 120.63109 * 233.58364 * 5 4 2 7 7 H 1.08000 * 120.00077 * 152.59590 * 6 5 4 8 8 C 1.38809 * 119.99970 * 332.59802 * 6 5 4 9 9 N 1.31620 * 119.99772 * 159.31237 * 8 6 5 10 10 Si 1.86801 * 120.00154 * 339.31588 * 8 6 5 11 11 H 1.48495 * 109.47259 * 92.94960 * 10 8 6 12 12 H 1.48499 * 109.47254 * 212.95226 * 10 8 6 13 13 H 1.48505 * 109.46839 * 332.95190 * 10 8 6 14 14 C 1.46932 * 118.73842 * 53.60647 * 5 4 2 15 15 C 1.53201 * 108.77372 * 306.39321 * 14 5 4 16 16 C 1.53035 * 109.31175 * 54.63624 * 15 14 5 17 17 H 1.08992 * 109.45479 * 58.64977 * 16 15 14 18 18 N 1.46500 * 109.45642 * 178.61559 * 16 15 14 19 19 C 1.34783 * 120.00072 * 275.06577 * 18 16 15 20 20 O 1.21281 * 119.99251 * 0.02562 * 19 18 16 21 21 C 1.50694 * 120.00241 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.47767 * 59.98625 * 21 19 18 23 23 C 1.53110 * 109.47513 * 180.02562 * 21 19 18 24 24 C 1.53355 * 109.53433 * 189.99080 * 23 21 19 25 25 C 1.50869 * 108.41234 * 310.00922 * 24 23 21 26 26 N 1.33575 * 128.03090 * 196.75077 * 25 24 23 27 27 C 1.30752 * 109.14069 * 179.97438 * 26 25 24 28 28 N 1.35309 * 108.77179 * 0.25215 * 27 26 25 29 29 H 0.96998 * 126.49838 * 180.02562 * 28 27 26 30 30 C 1.35027 * 123.98476 * 16.71184 * 25 24 23 31 31 C 1.50654 * 124.45315 * 0.11201 * 30 25 24 32 32 H 1.09004 * 109.46970 * 299.93376 * 1 2 3 33 33 H 1.09001 * 109.47244 * 59.92971 * 1 2 3 34 34 H 1.08997 * 109.47143 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47007 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47911 * 300.06517 * 3 2 1 37 37 H 1.08998 * 109.47079 * 60.06942 * 3 2 1 38 38 H 1.09002 * 109.58493 * 305.19567 * 4 2 1 39 39 H 1.08990 * 109.58814 * 65.62538 * 4 2 1 40 40 H 0.97004 * 119.99704 * 179.97438 * 9 8 6 41 41 H 1.08992 * 109.58613 * 66.17613 * 14 5 4 42 42 H 1.09000 * 109.58609 * 186.46282 * 14 5 4 43 43 H 1.08999 * 109.49389 * 294.68008 * 15 14 5 44 44 H 1.08994 * 109.49457 * 174.58795 * 15 14 5 45 45 H 0.97003 * 120.00172 * 95.06967 * 18 16 15 46 46 H 1.09007 * 109.46475 * 69.97721 * 23 21 19 47 47 H 1.08999 * 109.46280 * 310.01101 * 23 21 19 48 48 H 1.09001 * 109.67702 * 190.27468 * 24 23 21 49 49 H 1.09001 * 109.67185 * 69.73914 * 24 23 21 50 50 H 1.08007 * 125.61194 * 180.02562 * 27 26 25 51 51 H 1.09007 * 109.67475 * 136.17302 * 31 30 25 52 52 H 1.08995 * 109.67932 * 256.72410 * 31 30 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0412 -0.7241 -1.2495 5 7 3.5046 -0.8294 -1.1695 6 6 4.2935 -0.3799 -2.1945 7 1 5.3003 -0.0445 -1.9939 8 6 3.7992 -0.3552 -3.4913 9 7 4.3571 0.4240 -4.3935 10 14 2.3421 -1.4277 -3.9561 11 1 1.0856 -0.6531 -3.7941 12 1 2.4775 -1.8613 -5.3699 13 1 2.3048 -2.6216 -3.0736 14 6 4.1053 -1.4267 0.0310 15 6 3.5708 -0.6947 1.2662 16 6 2.0408 -0.7228 1.2485 17 1 1.6969 -1.7570 1.2356 18 7 1.5266 -0.0523 2.4453 19 6 1.3985 -0.7373 3.5990 20 8 1.7095 -1.9086 3.6463 21 6 0.8691 -0.0478 4.8299 22 1 -0.1355 0.3266 4.6330 23 6 0.8248 -1.0426 5.9930 24 6 0.0605 -0.4227 7.1691 25 6 0.6254 0.9511 7.4335 26 7 0.4792 1.7045 8.5267 27 6 1.1257 2.8291 8.3619 28 7 1.7045 2.8233 7.1389 29 1 2.2454 3.5302 6.7533 30 6 1.3920 1.6336 6.5562 31 6 1.7884 1.1245 5.1948 32 1 -0.3633 0.5128 0.8906 33 1 -0.3634 0.5149 -0.8894 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1306 1.4418 -0.0005 36 1 1.6766 1.9567 -0.8893 37 1 1.6785 1.9559 0.8906 38 1 1.6052 -1.7219 -1.2976 39 1 1.7637 -0.1585 -2.1388 40 1 4.0118 0.4410 -5.2999 41 1 3.8375 -2.4817 0.0873 42 1 5.1897 -1.3269 -0.0147 43 1 3.9160 0.3392 1.2539 44 1 3.9334 -1.1891 2.1673 45 1 1.2782 0.8846 2.4074 46 1 1.8414 -1.2810 6.3059 47 1 0.3205 -1.9541 5.6723 48 1 0.1816 -1.0461 8.0550 49 1 -0.9972 -0.3425 6.9180 50 1 1.1846 3.6320 9.0819 51 1 1.6783 1.9209 4.4588 52 1 2.8240 0.7851 5.2170 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941150789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:43 Heat of formation + Delta-G solvation = 8.766312 kcal Electronic energy + Delta-G solvation = -31921.823863 eV Core-core repulsion = 27921.075881 eV Total energy + Delta-G solvation = -4000.747982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.19699 -41.50100 -39.92086 -37.15931 -36.33844 -34.45653 -34.03270 -33.90093 -31.97400 -30.71756 -30.10712 -28.19442 -27.73359 -26.85877 -25.08390 -24.42109 -23.36312 -22.46715 -22.17800 -21.27213 -20.11899 -19.77804 -18.98778 -18.64217 -17.90159 -17.25950 -16.71921 -16.57138 -16.08650 -16.02863 -15.66092 -15.29325 -15.18643 -15.01273 -14.87148 -14.77079 -14.62020 -14.40653 -14.19828 -14.15402 -13.77459 -13.55770 -13.20168 -13.00596 -12.90594 -12.84927 -12.61145 -12.55150 -12.38224 -12.28653 -12.05911 -11.99893 -11.88613 -11.81185 -11.54184 -11.41673 -11.16451 -10.90664 -10.79164 -10.76618 -10.58175 -9.94565 -9.08700 -8.92308 -8.15371 -5.45991 1.10884 1.27356 1.40988 1.48534 1.65733 2.14296 2.18814 2.33231 2.41006 3.06443 3.32813 3.47674 3.62864 3.70075 3.81144 3.83400 3.92930 3.97046 4.17769 4.23781 4.31273 4.32658 4.34877 4.47133 4.50498 4.58034 4.59457 4.64265 4.70461 4.77524 4.80374 4.84847 4.88040 4.94231 4.98090 5.02351 5.06727 5.09411 5.13113 5.15308 5.22579 5.31562 5.34609 5.36352 5.37794 5.58050 5.66316 5.82148 5.88588 6.14221 6.61260 6.64282 6.92105 7.17562 7.33247 7.63138 8.04158 9.04430 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.002536 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.542743 B =11037.160138 C =11312.964427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.133 3.867 5 N -0.613 5.613 6 C -0.238 4.238 7 H 0.055 0.945 8 C -0.029 4.029 9 N -0.954 5.954 10 Si 0.935 3.065 11 H -0.271 1.271 12 H -0.314 1.314 13 H -0.268 1.268 14 C 0.145 3.855 15 C -0.130 4.130 16 C 0.174 3.826 17 H 0.064 0.936 18 N -0.706 5.706 19 C 0.520 3.480 20 O -0.577 6.577 21 C -0.089 4.089 22 H 0.122 0.878 23 C -0.092 4.092 24 C -0.030 4.030 25 C -0.023 4.023 26 N -0.533 5.533 27 C 0.184 3.816 28 N -0.549 5.549 29 H 0.437 0.563 30 C -0.027 4.027 31 C -0.027 4.027 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.022 0.978 39 H 0.055 0.945 40 H 0.260 0.740 41 H 0.023 0.977 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.411 0.589 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.083 0.917 50 H 0.243 0.757 51 H 0.105 0.895 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 7.256 24.175 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 C -0.181 4.181 4 C 0.008 3.992 5 N -0.337 5.337 6 C -0.368 4.368 7 H 0.073 0.927 8 C -0.224 4.224 9 N -0.600 5.600 10 Si 0.765 3.235 11 H -0.198 1.198 12 H -0.243 1.243 13 H -0.193 1.193 14 C 0.020 3.980 15 C -0.170 4.170 16 C 0.069 3.931 17 H 0.082 0.918 18 N -0.358 5.358 19 C 0.307 3.693 20 O -0.456 6.456 21 C -0.111 4.111 22 H 0.140 0.860 23 C -0.131 4.131 24 C -0.068 4.068 25 C -0.152 4.152 26 N -0.252 5.252 27 C -0.100 4.100 28 N -0.153 5.153 29 H 0.278 0.722 30 C -0.144 4.144 31 C -0.066 4.066 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.097 0.903 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.249 0.751 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.259 0.741 51 H 0.123 0.877 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.384 6.234 24.774 27.576 hybrid contribution 0.439 0.308 -1.808 1.886 sum -9.945 6.542 22.965 25.867 Atomic orbital electron populations 1.21821 0.92761 1.02016 1.02849 1.21191 0.96354 0.96798 0.93960 1.21703 1.01353 0.93736 1.01343 1.21443 0.83686 0.96994 0.97102 1.44436 1.01296 1.70350 1.17575 1.18815 0.97726 1.34052 0.86186 0.92685 1.25784 1.00856 0.99971 0.95801 1.69948 1.45633 1.40017 1.04449 0.86093 0.80746 0.81054 0.75646 1.19791 1.24295 1.19312 1.21018 0.97077 0.94450 0.85466 1.22251 0.95535 1.01629 0.97587 1.20570 0.92999 0.96050 0.83486 0.91822 1.46058 1.65513 1.15001 1.09199 1.20906 0.76920 0.86600 0.84835 1.90710 1.51240 1.18272 1.85346 1.21263 1.01768 0.96107 0.91946 0.86036 1.21332 1.01121 0.97605 0.92993 1.19920 0.99289 0.89548 0.98018 1.20816 1.03900 0.98770 0.91691 1.69953 1.23737 1.04720 1.26798 1.25752 0.96896 0.99077 0.88251 1.42920 1.41281 1.15785 1.15274 0.72221 1.20878 1.05958 0.88976 0.98580 1.19974 0.99188 0.96680 0.90719 0.89911 0.92578 0.93100 0.93195 0.93993 0.90335 0.96045 0.92663 0.93055 0.95860 0.92299 0.90930 0.91690 0.75073 0.92334 0.90603 0.90643 0.89868 0.74086 0.87656 0.90179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.31 71.98 0.60 -2.67 16 2 C -0.08 -2.38 0.56 -52.10 -0.03 -2.41 16 3 C -0.12 -3.47 7.83 71.98 0.56 -2.91 16 4 C 0.13 5.40 2.88 86.36 0.25 5.64 16 5 N -0.61 -27.71 2.21 -699.08 -1.54 -29.25 16 6 C -0.24 -13.06 10.03 84.03 0.84 -12.22 16 7 H 0.06 3.30 8.06 -2.91 -0.02 3.28 16 8 C -0.03 -1.68 5.23 84.86 0.44 -1.23 16 9 N -0.95 -58.76 13.97 21.65 0.30 -58.46 16 10 Si 0.93 46.10 24.35 68.60 1.67 47.77 16 11 H -0.27 -12.48 6.62 99.48 0.66 -11.82 16 12 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 13 H -0.27 -12.97 6.64 99.48 0.66 -12.31 16 14 C 0.15 5.59 6.52 86.36 0.56 6.16 16 15 C -0.13 -3.99 5.31 30.67 0.16 -3.83 16 16 C 0.17 4.85 1.57 45.02 0.07 4.92 16 17 H 0.06 2.08 7.58 -2.39 -0.02 2.07 16 18 N -0.71 -13.94 4.19 -442.42 -1.86 -15.79 16 19 C 0.52 11.21 7.10 87.65 0.62 11.84 16 20 O -0.58 -17.77 15.48 -3.03 -0.05 -17.81 16 21 C -0.09 -1.33 2.50 -11.37 -0.03 -1.36 16 22 H 0.12 1.39 8.12 -2.39 -0.02 1.37 16 23 C -0.09 -1.62 4.64 30.75 0.14 -1.48 16 24 C -0.03 -0.51 6.30 30.02 0.19 -0.32 16 25 C -0.02 -0.43 6.98 41.61 0.29 -0.14 16 26 N -0.53 -10.97 11.25 -187.89 -2.11 -13.09 16 27 C 0.18 2.27 13.05 180.10 2.35 4.62 16 28 N -0.55 -5.40 6.14 -186.44 -1.15 -6.55 16 29 H 0.44 1.25 8.96 -92.71 -0.83 0.42 16 30 C -0.03 -0.39 7.08 41.14 0.29 -0.10 16 31 C -0.03 -0.32 5.43 29.96 0.16 -0.16 16 32 H 0.08 1.45 7.36 -2.38 -0.02 1.44 16 33 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.05 1.67 5.97 -2.39 -0.01 1.66 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.08 1.47 6.58 -2.39 -0.02 1.45 16 38 H 0.02 0.89 7.08 -2.39 -0.02 0.88 16 39 H 0.06 2.49 4.50 -2.39 -0.01 2.47 16 40 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.06 2.30 7.93 -2.39 -0.02 2.28 16 43 H 0.07 2.17 6.34 -2.39 -0.02 2.16 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.41 5.66 6.33 -92.71 -0.59 5.07 16 46 H 0.06 1.19 8.12 -2.38 -0.02 1.17 16 47 H 0.08 1.46 7.77 -2.39 -0.02 1.44 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.24 0.85 8.06 -2.91 -0.02 0.83 16 51 H 0.11 0.73 7.90 -2.38 -0.02 0.71 16 52 H 0.08 1.09 8.11 -2.39 -0.02 1.07 16 Total: -1.00 -76.79 389.33 2.18 -74.61 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -0.57 Total: 14.22 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 7.48 Total: 4.36 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -6.36 Total: -123.14 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.77 kcal Total: -76.79 2.18 -74.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941150789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.372 kcal (2) G-P(sol) polarization free energy of solvation -76.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds