Wall clock time and date at job start Wed Apr 1 2020 04:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28444 * 125.19639 * 2 1 4 4 C 1.31071 * 110.96635 * 180.02562 * 3 2 1 5 5 C 1.39528 * 107.59752 * 359.71879 * 4 3 2 6 6 C 1.36666 * 125.19878 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.93633 * 0.02562 * 6 2 1 8 8 O 1.21625 * 120.00160 * 101.17633 * 7 6 2 9 9 N 1.34780 * 120.00036 * 281.17353 * 7 6 2 10 10 C 1.46492 * 120.00168 * 185.27133 * 9 7 6 11 11 H 1.09003 * 109.45074 * 34.96810 * 10 9 7 12 12 C 1.53047 * 109.46356 * 275.00534 * 10 9 7 13 13 C 1.53191 * 109.34281 * 178.63169 * 12 10 9 14 14 N 1.46924 * 108.77550 * 54.61445 * 13 12 10 15 15 C 1.36941 * 120.63143 * 126.41709 * 14 13 12 16 16 H 1.08000 * 119.99207 * 325.49023 * 15 14 13 17 17 C 1.38811 * 120.00205 * 145.49022 * 15 14 13 18 18 N 1.31614 * 120.00147 * 346.71648 * 17 15 14 19 19 Si 1.86796 * 120.00056 * 166.70733 * 17 15 14 20 20 H 1.48506 * 109.47264 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47177 * 120.00155 * 19 17 15 22 22 H 1.48501 * 109.47467 * 240.00426 * 19 17 15 23 23 C 1.46933 * 118.74035 * 306.39239 * 14 13 12 24 24 C 1.53038 * 109.49042 * 154.91743 * 10 9 7 25 25 C 1.53000 * 109.47034 * 61.40054 * 24 10 9 26 26 C 1.53008 * 109.52179 * 301.34077 * 24 10 9 27 27 C 1.50851 * 109.87925 * 180.36595 * 5 4 3 28 28 C 1.54416 * 105.17060 * 17.19133 * 27 5 4 29 29 C 1.51267 * 143.02460 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46998 * 273.27509 * 1 2 3 31 31 H 1.08998 * 109.46825 * 33.27231 * 1 2 3 32 32 H 1.08999 * 109.46736 * 153.27669 * 1 2 3 33 33 H 0.97004 * 120.00042 * 5.27541 * 9 7 6 34 34 H 1.08998 * 109.49806 * 58.65617 * 12 10 9 35 35 H 1.09000 * 109.48975 * 298.59490 * 12 10 9 36 36 H 1.08990 * 109.58838 * 174.40488 * 13 12 10 37 37 H 1.08997 * 109.58499 * 294.68951 * 13 12 10 38 38 H 0.97001 * 120.00307 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58293 * 173.39887 * 23 14 13 40 40 H 1.08994 * 109.58547 * 293.68219 * 23 14 13 41 41 H 1.09004 * 109.47487 * 179.85944 * 25 24 10 42 42 H 1.09004 * 109.47043 * 299.85883 * 25 24 10 43 43 H 1.09005 * 109.47262 * 59.85783 * 25 24 10 44 44 H 1.09002 * 109.46895 * 300.10896 * 26 24 10 45 45 H 1.09006 * 109.46870 * 60.10719 * 26 24 10 46 46 H 1.08999 * 109.47247 * 180.10896 * 26 24 10 47 47 H 1.09003 * 110.29801 * 136.11465 * 27 5 4 48 48 H 1.09000 * 110.30323 * 258.26116 * 27 5 4 49 49 H 1.08998 * 110.78469 * 92.01971 * 28 27 5 50 50 H 1.09006 * 110.77976 * 215.45859 * 28 27 5 51 51 H 1.08997 * 110.28559 * 281.79860 * 29 4 3 52 52 H 1.09003 * 110.28593 * 43.90217 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4759 0.7274 -0.0005 5 6 3.5579 -0.6654 0.0056 6 6 2.2528 -1.1168 -0.0005 7 6 1.8014 -2.5175 -0.0017 8 8 1.8095 -3.1582 -1.0354 9 7 1.3790 -3.0903 1.1429 10 6 1.0393 -4.5151 1.1670 11 1 1.7043 -5.0582 0.4954 12 6 -0.4096 -4.7017 0.7107 13 6 -0.7511 -6.1951 0.7043 14 7 -0.4601 -6.7525 2.0321 15 6 -1.4177 -7.4462 2.7228 16 1 -2.4560 -7.1603 2.6409 17 6 -1.0539 -8.5168 3.5281 18 7 0.1534 -9.0320 3.4322 19 14 -2.2778 -9.2260 4.7481 20 1 -3.5557 -8.4744 4.6610 21 1 -2.5223 -10.6557 4.4296 22 1 -1.7288 -9.1120 6.1232 23 6 0.8781 -6.5519 2.6048 24 6 1.2013 -5.0546 2.5899 25 6 0.2438 -4.3162 3.5274 26 6 2.6420 -4.8385 3.0578 27 6 5.0042 -1.0941 0.0143 28 6 5.7941 0.1579 0.4534 29 6 4.8709 1.3123 -0.0013 30 1 -0.3633 0.0587 1.0260 31 1 -0.3633 0.8592 -0.5638 32 1 -0.3633 -0.9179 -0.4621 33 1 1.2998 -2.5591 1.9507 34 1 -0.5296 -4.2967 -0.2941 35 1 -1.0769 -4.1789 1.3959 36 1 -1.8087 -6.3270 0.4763 37 1 -0.1489 -6.7044 -0.0481 38 1 0.4075 -9.7803 3.9946 39 1 0.8952 -6.9194 3.6308 40 1 1.6146 -7.0927 2.0106 41 1 0.3573 -4.7021 4.5405 42 1 0.4742 -3.2508 3.5165 43 1 -0.7823 -4.4694 3.1931 44 1 3.3238 -5.3638 2.3890 45 1 2.8715 -3.7729 3.0470 46 1 2.7569 -5.2248 4.0705 47 1 5.1539 -1.9051 0.7271 48 1 5.3125 -1.4051 -0.9838 49 1 5.9325 0.1685 1.5346 50 1 6.7538 0.2097 -0.0609 51 1 5.1381 1.6510 -1.0023 52 1 4.9350 2.1379 0.7075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941158924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:35 Heat of formation + Delta-G solvation = 65.623296 kcal Electronic energy + Delta-G solvation = -32127.230299 eV Core-core repulsion = 28128.947821 eV Total energy + Delta-G solvation = -3998.282478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.80872 -39.95366 -38.04533 -37.12537 -34.63937 -32.98478 -32.38619 -32.04249 -30.94531 -29.40038 -27.70083 -26.83179 -26.65303 -25.97252 -25.21310 -23.29214 -22.08323 -21.28352 -20.64333 -20.43945 -19.62642 -18.27067 -17.45501 -16.79135 -16.67198 -15.85832 -15.74496 -15.24605 -14.91963 -14.71533 -14.42266 -14.03683 -13.96008 -13.60989 -13.45086 -13.23254 -13.15710 -12.97848 -12.91832 -12.73046 -12.70502 -12.35237 -12.04162 -11.69229 -11.55925 -11.38896 -11.37125 -11.23843 -11.12828 -10.92873 -10.73236 -10.66463 -10.50764 -10.29609 -10.17841 -10.12309 -9.99640 -9.75301 -9.47355 -9.11578 -8.79402 -8.69716 -8.51647 -6.61747 -5.83845 -3.33040 1.54505 2.02662 2.45207 2.67545 3.25618 3.33013 3.41377 3.42787 3.70157 4.44651 4.50076 4.59634 4.67632 4.79161 4.84161 4.93514 5.07378 5.10876 5.13014 5.23166 5.36047 5.43040 5.49717 5.52295 5.52982 5.57961 5.72973 5.76555 5.79272 5.87580 5.89824 5.98256 6.02959 6.03503 6.13894 6.24798 6.34588 6.35758 6.38524 6.42176 6.56110 6.64628 6.66594 6.78105 6.84937 6.93103 6.98087 7.24697 7.48592 7.58753 7.77520 7.93768 8.16448 8.44681 9.17606 9.78373 10.39361 11.24637 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002720 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.884063 B =10292.181868 C =10778.431561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.276 5.276 3 N -0.269 5.269 4 C 0.004 3.996 5 C -0.182 4.182 6 C -0.007 4.007 7 C 0.588 3.412 8 O -0.521 6.521 9 N -0.705 5.705 10 C 0.163 3.837 11 H 0.083 0.917 12 C -0.143 4.143 13 C 0.147 3.853 14 N -0.588 5.588 15 C -0.255 4.255 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.899 5.899 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.191 3.809 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.045 4.045 28 C -0.115 4.115 29 C -0.025 4.025 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.397 0.603 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.020 0.980 38 H 0.254 0.746 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.028 0.972 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.085 0.915 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.615 19.570 -3.526 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.064 5.064 3 N -0.100 5.100 4 C -0.155 4.155 5 C -0.192 4.192 6 C -0.135 4.135 7 C 0.369 3.631 8 O -0.395 6.395 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.183 4.183 13 C 0.021 3.979 14 N -0.310 5.310 15 C -0.385 4.385 16 H 0.080 0.920 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.216 1.216 23 C 0.064 3.936 24 C -0.099 4.099 25 C -0.184 4.184 26 C -0.193 4.193 27 C -0.083 4.083 28 C -0.153 4.153 29 C -0.064 4.064 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.233 0.767 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.099 0.901 49 H 0.095 0.905 50 H 0.101 0.899 51 H 0.103 0.897 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.744 19.818 -4.183 21.348 hybrid contribution -0.308 -0.837 1.023 1.357 sum 6.437 18.981 -3.159 20.290 Atomic orbital electron populations 1.22182 0.72644 1.05557 1.04660 1.45707 1.07253 1.01152 1.52273 1.72635 1.02940 1.12893 1.21521 1.22725 0.92639 0.94329 1.05816 1.21093 0.93797 0.95453 1.08907 1.20673 0.90994 0.89013 1.12775 1.17043 0.77509 0.84120 0.84386 1.90852 1.53390 1.63587 1.31701 1.46391 1.65685 1.12272 1.11283 1.21106 0.96772 0.78159 0.97945 0.89913 1.22460 0.95444 1.00421 0.99988 1.20878 0.98691 0.89812 0.88565 1.43973 1.10908 1.62311 1.13785 1.19119 0.89091 1.07559 1.22741 0.91985 1.25214 0.96723 0.95826 1.01212 1.70001 1.19167 1.24908 1.40156 0.86274 0.80877 0.78790 0.81107 1.20210 1.21643 1.21565 1.20730 0.86091 0.86591 1.00150 1.21583 0.94720 1.01165 0.92470 1.21751 1.00772 0.96549 0.99352 1.21778 0.96075 1.00129 1.01315 1.20375 0.87508 0.98130 1.02259 1.22432 0.97955 0.93166 1.01728 1.20451 0.85474 0.98036 1.02432 0.89459 0.88303 0.88651 0.76726 0.92730 0.91834 0.92515 0.96209 0.93609 0.89779 0.95999 0.92808 0.95322 0.91038 0.92941 0.93826 0.92507 0.90725 0.90143 0.90544 0.89875 0.89715 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.20 59.85 0.67 1.46 16 2 N -0.28 -3.48 3.75 -63.94 -0.24 -3.72 16 3 N -0.27 -3.62 11.91 33.78 0.40 -3.21 16 4 C 0.00 0.05 8.13 -82.16 -0.67 -0.62 16 5 C -0.18 -2.38 7.02 -104.12 -0.73 -3.11 16 6 C -0.01 -0.10 6.71 -82.14 -0.55 -0.65 16 7 C 0.59 9.01 6.99 -12.64 -0.09 8.92 16 8 O -0.52 -9.89 16.76 5.26 0.09 -9.80 16 9 N -0.71 -9.86 4.29 -54.93 -0.24 -10.09 16 10 C 0.16 2.70 1.53 -67.89 -0.10 2.60 16 11 H 0.08 1.57 7.66 -51.93 -0.40 1.17 16 12 C -0.14 -2.46 5.31 -26.61 -0.14 -2.60 16 13 C 0.15 3.04 6.52 -3.71 -0.02 3.01 16 14 N -0.59 -13.87 2.40 -172.33 -0.41 -14.28 16 15 C -0.26 -6.67 9.53 -15.06 -0.14 -6.81 16 16 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 17 C 0.01 0.26 4.96 -17.43 -0.09 0.18 16 18 N -0.90 -25.25 11.46 55.49 0.64 -24.62 16 19 Si 0.90 21.02 29.57 -169.99 -5.03 16.00 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.19 4.23 3.93 -3.71 -0.01 4.22 16 24 C -0.10 -1.65 0.56 -154.39 -0.09 -1.74 16 25 C -0.13 -2.04 7.83 37.16 0.29 -1.75 16 26 C -0.14 -2.03 8.31 37.16 0.31 -1.72 16 27 C -0.04 -0.45 6.75 -27.07 -0.18 -0.63 16 28 C -0.11 -0.83 7.08 -25.12 -0.18 -1.01 16 29 C -0.02 -0.21 6.77 -26.74 -0.18 -0.39 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.84 7.70 -51.93 -0.40 0.44 16 33 H 0.40 4.89 6.65 -40.82 -0.27 4.62 16 34 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 35 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 36 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.08 2.10 6.45 -51.93 -0.33 1.76 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 43 H 0.07 1.27 5.97 -51.93 -0.31 0.96 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.57 7.37 -51.93 -0.38 0.19 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 403.32 15.07 6.08 6.08 Total: -1.00 -31.93 403.32 -9.26 -41.20 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -8.64 Total: 3.10 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.91 Total: -0.64 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.15 Total: -55.92 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.93 -9.26 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941158924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.818 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds