Wall clock time and date at job start Wed Apr 1 2020 04:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 N 1.28444 * 125.19639 * 2 1 4 4 C 1.31071 * 110.96635 * 180.02562 * 3 2 1 5 5 C 1.39528 * 107.59752 * 359.71879 * 4 3 2 6 6 C 1.36666 * 125.19878 * 180.02562 * 2 1 3 7 7 C 1.47164 * 126.93633 * 0.02562 * 6 2 1 8 8 O 1.21625 * 120.00160 * 101.17633 * 7 6 2 9 9 N 1.34780 * 120.00036 * 281.17353 * 7 6 2 10 10 C 1.46492 * 120.00168 * 185.27133 * 9 7 6 11 11 H 1.09003 * 109.45074 * 34.96810 * 10 9 7 12 12 C 1.53047 * 109.46356 * 275.00534 * 10 9 7 13 13 C 1.53191 * 109.34281 * 178.63169 * 12 10 9 14 14 N 1.46924 * 108.77550 * 54.61445 * 13 12 10 15 15 C 1.36941 * 120.63143 * 126.41709 * 14 13 12 16 16 H 1.08000 * 119.99207 * 325.49023 * 15 14 13 17 17 C 1.38811 * 120.00205 * 145.49022 * 15 14 13 18 18 N 1.31614 * 120.00147 * 346.71648 * 17 15 14 19 19 Si 1.86796 * 120.00056 * 166.70733 * 17 15 14 20 20 H 1.48506 * 109.47264 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47177 * 120.00155 * 19 17 15 22 22 H 1.48501 * 109.47467 * 240.00426 * 19 17 15 23 23 C 1.46933 * 118.74035 * 306.39239 * 14 13 12 24 24 C 1.53038 * 109.49042 * 154.91743 * 10 9 7 25 25 C 1.53000 * 109.47034 * 61.40054 * 24 10 9 26 26 C 1.53008 * 109.52179 * 301.34077 * 24 10 9 27 27 C 1.50851 * 109.87925 * 180.36595 * 5 4 3 28 28 C 1.54416 * 105.17060 * 17.19133 * 27 5 4 29 29 C 1.51267 * 143.02460 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.46998 * 273.27509 * 1 2 3 31 31 H 1.08998 * 109.46825 * 33.27231 * 1 2 3 32 32 H 1.08999 * 109.46736 * 153.27669 * 1 2 3 33 33 H 0.97004 * 120.00042 * 5.27541 * 9 7 6 34 34 H 1.08998 * 109.49806 * 58.65617 * 12 10 9 35 35 H 1.09000 * 109.48975 * 298.59490 * 12 10 9 36 36 H 1.08990 * 109.58838 * 174.40488 * 13 12 10 37 37 H 1.08997 * 109.58499 * 294.68951 * 13 12 10 38 38 H 0.97001 * 120.00307 * 180.02562 * 18 17 15 39 39 H 1.09000 * 109.58293 * 173.39887 * 23 14 13 40 40 H 1.08994 * 109.58547 * 293.68219 * 23 14 13 41 41 H 1.09004 * 109.47487 * 179.85944 * 25 24 10 42 42 H 1.09004 * 109.47043 * 299.85883 * 25 24 10 43 43 H 1.09005 * 109.47262 * 59.85783 * 25 24 10 44 44 H 1.09002 * 109.46895 * 300.10896 * 26 24 10 45 45 H 1.09006 * 109.46870 * 60.10719 * 26 24 10 46 46 H 1.08999 * 109.47247 * 180.10896 * 26 24 10 47 47 H 1.09003 * 110.29801 * 136.11465 * 27 5 4 48 48 H 1.09000 * 110.30323 * 258.26116 * 27 5 4 49 49 H 1.08998 * 110.78469 * 92.01971 * 28 27 5 50 50 H 1.09006 * 110.77976 * 215.45859 * 28 27 5 51 51 H 1.08997 * 110.28559 * 281.79860 * 29 4 3 52 52 H 1.09003 * 110.28593 * 43.90217 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2054 1.0496 0.0000 4 6 3.4759 0.7274 -0.0005 5 6 3.5579 -0.6654 0.0056 6 6 2.2528 -1.1168 -0.0005 7 6 1.8014 -2.5175 -0.0017 8 8 1.8095 -3.1582 -1.0354 9 7 1.3790 -3.0903 1.1429 10 6 1.0393 -4.5151 1.1670 11 1 1.7043 -5.0582 0.4954 12 6 -0.4096 -4.7017 0.7107 13 6 -0.7511 -6.1951 0.7043 14 7 -0.4601 -6.7525 2.0321 15 6 -1.4177 -7.4462 2.7228 16 1 -2.4560 -7.1603 2.6409 17 6 -1.0539 -8.5168 3.5281 18 7 0.1534 -9.0320 3.4322 19 14 -2.2778 -9.2260 4.7481 20 1 -3.5557 -8.4744 4.6610 21 1 -2.5223 -10.6557 4.4296 22 1 -1.7288 -9.1120 6.1232 23 6 0.8781 -6.5519 2.6048 24 6 1.2013 -5.0546 2.5899 25 6 0.2438 -4.3162 3.5274 26 6 2.6420 -4.8385 3.0578 27 6 5.0042 -1.0941 0.0143 28 6 5.7941 0.1579 0.4534 29 6 4.8709 1.3123 -0.0013 30 1 -0.3633 0.0587 1.0260 31 1 -0.3633 0.8592 -0.5638 32 1 -0.3633 -0.9179 -0.4621 33 1 1.2998 -2.5591 1.9507 34 1 -0.5296 -4.2967 -0.2941 35 1 -1.0769 -4.1789 1.3959 36 1 -1.8087 -6.3270 0.4763 37 1 -0.1489 -6.7044 -0.0481 38 1 0.4075 -9.7803 3.9946 39 1 0.8952 -6.9194 3.6308 40 1 1.6146 -7.0927 2.0106 41 1 0.3573 -4.7021 4.5405 42 1 0.4742 -3.2508 3.5165 43 1 -0.7823 -4.4694 3.1931 44 1 3.3238 -5.3638 2.3890 45 1 2.8715 -3.7729 3.0470 46 1 2.7569 -5.2248 4.0705 47 1 5.1539 -1.9051 0.7271 48 1 5.3125 -1.4051 -0.9838 49 1 5.9325 0.1685 1.5346 50 1 6.7538 0.2097 -0.0609 51 1 5.1381 1.6510 -1.0023 52 1 4.9350 2.1379 0.7075 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941158924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:34 Heat of formation + Delta-G solvation = 47.047866 kcal Electronic energy + Delta-G solvation = -32128.035790 eV Core-core repulsion = 28128.947821 eV Total energy + Delta-G solvation = -3999.087969 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.72587 -41.33101 -39.50819 -37.86418 -36.31005 -34.41374 -33.84457 -33.17042 -32.04106 -30.96830 -28.50612 -28.16529 -27.61170 -27.43267 -26.82986 -24.70916 -23.29140 -22.32922 -22.24000 -21.33587 -20.76822 -19.61814 -18.89782 -18.23635 -17.73549 -17.02677 -16.82736 -16.74618 -16.03297 -15.88747 -15.74954 -15.55782 -15.25373 -15.00746 -14.91792 -14.72940 -14.28729 -13.87279 -13.84531 -13.74567 -13.65397 -13.50152 -13.27940 -13.06161 -12.90603 -12.76987 -12.72176 -12.67270 -12.42017 -12.36456 -12.01593 -11.90244 -11.88767 -11.80366 -11.71162 -11.47013 -11.39376 -11.35177 -11.05963 -10.56052 -10.17432 -10.05296 -9.56684 -8.58665 -7.86728 -5.39179 0.54727 1.03414 1.46090 1.48941 1.55252 1.58344 1.58574 2.09975 2.50874 2.90118 3.29480 3.44985 3.65272 3.70045 3.89758 3.93638 3.94725 4.07161 4.21222 4.23439 4.25470 4.30543 4.31958 4.42190 4.49543 4.55210 4.63216 4.69984 4.77153 4.83715 4.85703 4.88242 4.91648 4.96196 5.03035 5.03443 5.07569 5.09557 5.20931 5.22812 5.28854 5.31117 5.40316 5.40792 5.42770 5.49963 5.60308 5.69546 5.71391 5.80625 6.33143 6.43596 6.95555 7.01990 7.17179 7.83884 8.40788 9.19627 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020784 B = 0.002720 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.884063 B =10292.181868 C =10778.431561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.275 5.275 3 N -0.285 5.285 4 C -0.006 4.006 5 C -0.196 4.196 6 C -0.030 4.030 7 C 0.599 3.401 8 O -0.562 6.562 9 N -0.688 5.688 10 C 0.176 3.824 11 H 0.057 0.943 12 C -0.128 4.128 13 C 0.145 3.855 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.064 0.936 17 C -0.041 4.041 18 N -0.933 5.933 19 Si 0.963 3.037 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.202 3.798 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.130 4.130 27 C -0.051 4.051 28 C -0.103 4.103 29 C -0.025 4.025 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.410 0.590 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.003 0.997 38 H 0.250 0.750 39 H 0.054 0.946 40 H -0.012 1.012 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.070 0.930 46 H 0.057 0.943 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.084 0.916 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 22.479 -2.732 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.063 5.063 3 N -0.116 5.116 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.158 4.158 7 C 0.382 3.618 8 O -0.439 6.439 9 N -0.339 5.339 10 C 0.071 3.929 11 H 0.075 0.925 12 C -0.168 4.168 13 C 0.018 3.982 14 N -0.324 5.324 15 C -0.389 4.389 16 H 0.082 0.918 17 C -0.238 4.238 18 N -0.578 5.578 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.223 1.223 22 H -0.216 1.216 23 C 0.075 3.925 24 C -0.089 4.089 25 C -0.177 4.177 26 C -0.188 4.188 27 C -0.089 4.089 28 C -0.141 4.141 29 C -0.064 4.064 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.006 0.994 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.103 0.897 50 H 0.126 0.874 51 H 0.115 0.885 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.987 22.775 -3.375 24.060 hybrid contribution -0.397 -1.742 0.688 1.915 sum 6.590 21.033 -2.687 22.204 Atomic orbital electron populations 1.22484 0.70951 1.06162 1.06331 1.46019 1.08258 1.00435 1.51636 1.72614 1.03698 1.13233 1.22041 1.23461 0.93529 0.94507 1.04937 1.21631 0.94623 0.96232 1.08245 1.20521 0.91913 0.88474 1.14876 1.17143 0.76401 0.84536 0.83717 1.90835 1.55077 1.64781 1.33182 1.46070 1.65146 1.10988 1.11689 1.20732 0.95859 0.79419 0.96852 0.92497 1.22256 0.96002 0.97729 1.00775 1.20952 0.98548 0.91848 0.86806 1.44186 1.10887 1.62453 1.14869 1.19408 0.89689 1.07395 1.22439 0.91830 1.25918 0.98283 0.96461 1.03112 1.70155 1.20934 1.25503 1.41185 0.85285 0.79280 0.77582 0.78751 1.18954 1.22259 1.21587 1.20486 0.84807 0.89752 0.97433 1.21348 0.96589 0.97555 0.93368 1.21670 0.99253 0.98570 0.98233 1.21734 0.94200 1.01798 1.01043 1.20549 0.86401 0.99637 1.02320 1.22451 0.98286 0.90811 1.02523 1.20659 0.83273 0.98775 1.03689 0.87355 0.86731 0.88962 0.75180 0.92097 0.90434 0.92286 0.97908 0.94109 0.92762 0.99358 0.93523 0.91548 0.92647 0.93739 0.91091 0.92373 0.90895 0.90265 0.89703 0.87365 0.88496 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 11.20 127.77 1.43 2.67 16 2 N -0.27 -6.48 3.75 -356.22 -1.34 -7.81 16 3 N -0.28 -7.13 11.91 -47.03 -0.56 -7.69 16 4 C -0.01 -0.13 8.13 43.16 0.35 0.22 16 5 C -0.20 -4.85 7.02 -19.54 -0.14 -4.99 16 6 C -0.03 -0.81 6.71 40.70 0.27 -0.53 16 7 C 0.60 17.84 6.99 86.59 0.61 18.45 16 8 O -0.56 -21.41 16.76 -4.11 -0.07 -21.48 16 9 N -0.69 -18.11 4.29 -445.93 -1.91 -20.02 16 10 C 0.18 5.74 1.53 45.02 0.07 5.81 16 11 H 0.06 2.21 7.66 -2.39 -0.02 2.19 16 12 C -0.13 -4.31 5.31 30.67 0.16 -4.15 16 13 C 0.14 6.07 6.52 86.36 0.56 6.64 16 14 N -0.60 -29.06 2.40 -699.12 -1.68 -30.74 16 15 C -0.26 -13.71 9.53 84.03 0.80 -12.91 16 16 H 0.06 3.30 7.86 -2.91 -0.02 3.28 16 17 C -0.04 -2.25 4.96 84.86 0.42 -1.83 16 18 N -0.93 -54.14 11.46 21.65 0.25 -53.89 16 19 Si 0.96 43.73 29.57 68.60 2.03 45.76 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 C 0.20 9.26 3.93 86.36 0.34 9.60 16 24 C -0.09 -2.91 0.56 -52.10 -0.03 -2.94 16 25 C -0.12 -3.63 7.83 71.98 0.56 -3.07 16 26 C -0.13 -3.78 8.31 71.98 0.60 -3.18 16 27 C -0.05 -0.94 6.75 30.38 0.21 -0.73 16 28 C -0.10 -1.16 7.08 31.64 0.22 -0.94 16 29 C -0.03 -0.35 6.77 30.59 0.21 -0.14 16 30 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.49 7.70 -2.39 -0.02 1.47 16 33 H 0.41 8.88 6.65 -92.71 -0.62 8.26 16 34 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 35 H 0.08 2.44 6.33 -2.39 -0.02 2.42 16 36 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.05 2.81 6.45 -2.39 -0.02 2.79 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.05 1.48 8.14 -2.38 -0.02 1.47 16 42 H 0.07 1.50 6.58 -2.39 -0.02 1.48 16 43 H 0.05 1.87 5.97 -2.38 -0.01 1.86 16 44 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.68 7.37 -2.38 -0.02 1.66 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 51 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 52 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.57 403.32 3.68 -67.90 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.30 Total: 20.00 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 6.65 Total: 7.97 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.24 Total: -120.16 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.07 Total: -21.48 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.57 3.68 -67.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941158924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.943 kcal (2) G-P(sol) polarization free energy of solvation -71.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds