Wall clock time and date at job start Wed Apr 1 2020 04:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.49879 * 2 1 4 4 C 1.53188 * 109.49748 * 239.89929 * 2 1 3 5 5 N 1.46931 * 108.77643 * 294.68745 * 4 2 1 6 6 C 1.36937 * 120.63278 * 126.41392 * 5 4 2 7 7 H 1.07997 * 119.99656 * 207.67900 * 6 5 4 8 8 C 1.38803 * 119.99810 * 27.67585 * 6 5 4 9 9 N 1.31624 * 120.00257 * 17.35669 * 8 6 5 10 10 Si 1.86802 * 119.99921 * 197.35327 * 8 6 5 11 11 H 1.48504 * 109.46740 * 60.00390 * 10 8 6 12 12 H 1.48506 * 109.47209 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47220 * 300.00114 * 10 8 6 14 14 C 1.46934 * 118.73762 * 306.39152 * 5 4 2 15 15 C 1.53195 * 108.77326 * 53.60900 * 14 5 4 16 16 C 1.53039 * 109.31392 * 305.36469 * 15 14 5 17 17 H 1.09008 * 109.45142 * 301.35087 * 16 15 14 18 18 N 1.46495 * 109.46292 * 181.39190 * 16 15 14 19 19 C 1.34777 * 120.00819 * 84.92955 * 18 16 15 20 20 O 1.21281 * 119.99033 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00310 * 180.02562 * 19 18 16 22 22 H 1.08994 * 109.39102 * 60.12706 * 21 19 18 23 23 C 1.53030 * 109.42939 * 179.97438 * 21 19 18 24 24 C 1.53371 * 109.74676 * 191.80412 * 23 21 19 25 25 C 1.50946 * 108.20598 * 309.34561 * 24 23 21 26 26 N 1.30126 * 128.29099 * 196.64908 * 25 24 23 27 27 N 1.40319 * 108.12489 * 179.86520 * 26 25 24 28 28 H 0.96995 * 126.00054 * 180.02562 * 27 26 25 29 29 C 1.35194 * 107.99391 * 0.04190 * 27 26 25 30 30 C 1.34580 * 107.61596 * 0.03935 * 29 27 26 31 31 C 1.50888 * 128.32288 * 179.71261 * 30 29 27 32 32 H 1.09004 * 109.47606 * 299.94068 * 1 2 3 33 33 H 1.09007 * 109.47007 * 59.93450 * 1 2 3 34 34 H 1.08996 * 109.47803 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46806 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46484 * 300.06166 * 3 2 1 37 37 H 1.08993 * 109.47042 * 60.06320 * 3 2 1 38 38 H 1.09000 * 109.58838 * 54.47026 * 4 2 1 39 39 H 1.08999 * 109.58605 * 174.76220 * 4 2 1 40 40 H 0.97002 * 119.99983 * 179.97438 * 9 8 6 41 41 H 1.08994 * 109.58746 * 173.39372 * 14 5 4 42 42 H 1.09001 * 109.58690 * 293.68300 * 14 5 4 43 43 H 1.09005 * 109.49577 * 185.41538 * 15 14 5 44 44 H 1.08997 * 109.50167 * 65.31508 * 15 14 5 45 45 H 0.97005 * 119.99559 * 264.92983 * 18 16 15 46 46 H 1.09000 * 109.42191 * 311.88681 * 23 21 19 47 47 H 1.09002 * 109.42557 * 71.71549 * 23 21 19 48 48 H 1.08989 * 109.71611 * 69.02556 * 24 23 21 49 49 H 1.08998 * 109.71249 * 189.67167 * 24 23 21 50 50 H 1.07997 * 126.19292 * 180.02562 * 29 27 26 51 51 H 1.08998 * 109.71669 * 77.06596 * 31 30 29 52 52 H 1.09003 * 109.71742 * 316.41967 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 1.6514 -2.1386 -1.1689 6 6 0.9638 -2.7322 -2.1936 7 1 0.3079 -3.5661 -1.9919 8 6 1.1098 -2.2620 -3.4913 9 7 2.1347 -1.4970 -3.8028 10 14 -0.1480 -2.7150 -4.7960 11 1 -1.4872 -2.2224 -4.3845 12 1 0.2327 -2.0909 -6.0886 13 1 -0.1899 -4.1911 -4.9518 14 6 2.0138 -2.9041 0.0318 15 6 1.5028 -2.1554 1.2668 16 6 2.0406 -0.7227 1.2487 17 1 3.1304 -0.7442 1.2356 18 7 1.5810 -0.0136 2.4453 19 6 2.2696 -0.1215 3.5989 20 8 3.2696 -0.8062 3.6462 21 6 1.7964 0.6075 4.8300 22 1 0.7942 0.2665 5.0896 23 6 2.7493 0.3167 5.9915 24 6 2.1275 0.8038 7.3062 25 6 1.6785 2.2322 7.1148 26 7 1.3791 3.1122 8.0254 27 7 1.0186 4.3042 7.3787 28 1 0.7484 5.1288 7.8121 29 6 1.1135 4.1012 6.0454 30 6 1.5171 2.8316 5.8545 31 6 1.7666 2.1153 4.5501 32 1 -0.3634 0.5129 0.8905 33 1 -0.3633 0.5149 -0.8895 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1307 1.4417 -0.0005 36 1 1.6766 1.9565 -0.8895 37 1 1.6785 1.9559 0.8905 38 1 1.6007 -0.2739 -2.1388 39 1 3.1272 -0.6447 -1.2990 40 1 2.2369 -1.1687 -4.7098 41 1 1.5552 -3.8919 -0.0124 42 1 3.0976 -3.0065 0.0865 43 1 1.8478 -2.6621 2.1681 44 1 0.4131 -2.1350 1.2548 45 1 0.7810 0.5336 2.4075 46 1 2.9303 -0.7565 6.0519 47 1 3.6940 0.8339 5.8237 48 1 1.2708 0.1801 7.5611 49 1 2.8688 0.7551 8.1038 50 1 0.9034 4.8265 5.2734 51 1 2.7232 2.4312 4.1342 52 1 0.9658 2.3430 3.8465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941161695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:17 Heat of formation + Delta-G solvation = 41.471735 kcal Electronic energy + Delta-G solvation = -31767.377864 eV Core-core repulsion = 27768.048095 eV Total energy + Delta-G solvation = -3999.329769 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.75954 -40.09204 -38.33609 -36.17802 -34.56229 -32.95823 -32.42847 -31.90415 -30.73223 -29.66459 -28.68049 -26.75161 -25.91065 -25.25222 -24.69542 -23.00645 -21.77598 -21.29066 -20.57357 -19.98257 -19.07780 -18.11908 -17.91706 -17.14665 -16.44328 -15.67833 -15.64284 -15.03728 -14.86832 -14.45773 -14.20042 -14.04397 -13.89054 -13.61814 -13.49179 -13.31401 -13.22348 -13.07335 -12.84685 -12.63570 -12.31487 -12.08835 -11.91673 -11.62832 -11.48678 -11.28556 -11.21981 -11.07685 -11.00150 -10.85696 -10.68137 -10.57995 -10.54490 -10.19797 -10.09718 -9.94489 -9.71864 -9.66010 -9.58665 -9.30649 -8.71681 -8.60517 -8.42815 -6.66049 -5.78524 -3.19832 1.61212 2.45131 2.56120 2.85409 3.37640 3.43329 3.44322 3.45107 4.16299 4.47376 4.49829 4.65251 4.67172 4.87029 5.00525 5.18276 5.19879 5.26496 5.29714 5.30528 5.42528 5.44797 5.50112 5.59726 5.60690 5.68866 5.75143 5.87817 5.90444 5.97240 6.00320 6.09787 6.12553 6.14474 6.25535 6.33110 6.38438 6.43001 6.50780 6.52175 6.67786 6.73943 6.85078 6.97052 6.98668 7.02567 7.07234 7.33704 7.39349 7.63345 7.78179 7.83044 8.45376 8.48836 9.21887 9.85354 10.42368 11.30108 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.002412 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.566854 B =11604.067173 C =12196.455376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.249 4.249 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.903 5.903 10 Si 0.900 3.100 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.080 0.920 18 N -0.720 5.720 19 C 0.514 3.486 20 O -0.542 6.542 21 C -0.105 4.105 22 H 0.097 0.903 23 C -0.096 4.096 24 C -0.040 4.040 25 C 0.085 3.915 26 N -0.292 5.292 27 N -0.487 5.487 28 H 0.438 0.562 29 C 0.063 3.937 30 C -0.233 4.233 31 C -0.030 4.030 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.092 0.908 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.177 0.823 51 H 0.076 0.924 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 12.019 19.545 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.191 4.191 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.060 3.940 17 H 0.098 0.902 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.419 6.419 21 C -0.126 4.126 22 H 0.115 0.885 23 C -0.134 4.134 24 C -0.079 4.079 25 C -0.083 4.083 26 N -0.114 5.114 27 N -0.195 5.195 28 H 0.282 0.718 29 C -0.083 4.083 30 C -0.244 4.244 31 C -0.069 4.069 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.194 0.806 51 H 0.095 0.905 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.748 11.803 20.610 23.909 hybrid contribution -1.181 0.602 -1.435 1.954 sum -3.929 12.404 19.175 23.173 Atomic orbital electron populations 1.21740 0.94789 1.02551 0.99283 1.21552 0.96237 0.94925 0.97198 1.21756 1.00764 0.95981 1.00607 1.20817 0.96322 0.83523 0.93402 1.44044 1.65202 1.05694 1.16186 1.19114 1.17946 1.15057 0.85792 0.91764 1.25009 0.97003 1.00621 0.96916 1.70019 1.27362 1.38484 1.18837 0.86410 0.81443 0.78111 0.81051 1.21099 1.21708 1.20937 1.20879 0.96647 0.94253 0.86249 1.22432 1.00952 0.95490 0.99338 1.20979 0.99197 0.91286 0.82576 0.90204 1.46363 1.29637 1.50498 1.10512 1.20491 0.83672 0.81399 0.84484 1.90696 1.25685 1.40766 1.84722 1.21362 1.01622 0.95588 0.94070 0.88529 1.21377 0.98090 1.02725 0.91237 1.20193 1.01057 0.87821 0.98826 1.22439 0.98321 0.96709 0.90868 1.77014 1.21711 0.91883 1.20788 1.46324 1.56043 1.12636 1.04491 0.71792 1.22074 1.01247 0.98043 0.86942 1.20024 1.13949 0.94554 0.95920 1.19924 1.02351 0.91593 0.92992 0.95203 0.93026 0.91133 0.93100 0.92703 0.93797 0.88951 0.96324 0.93606 0.92681 0.96283 0.92810 0.91914 0.77046 0.89679 0.90907 0.89646 0.89618 0.80610 0.90536 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.83 37.16 0.29 -1.76 16 2 C -0.10 -1.66 0.56 -154.39 -0.09 -1.75 16 3 C -0.13 -1.98 8.31 37.16 0.31 -1.67 16 4 C 0.19 4.19 3.99 -3.71 -0.01 4.18 16 5 N -0.59 -14.14 2.43 -172.32 -0.42 -14.56 16 6 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 7 H 0.06 1.68 7.89 -52.49 -0.41 1.27 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.54 11.19 55.49 0.62 -24.92 16 10 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 C 0.15 3.08 6.52 -3.70 -0.02 3.06 16 15 C -0.14 -2.51 5.31 -26.61 -0.14 -2.65 16 16 C 0.16 2.71 1.57 -67.89 -0.11 2.61 16 17 H 0.08 1.54 7.58 -51.92 -0.39 1.15 16 18 N -0.72 -9.43 4.19 -53.77 -0.23 -9.66 16 19 C 0.51 6.91 7.10 -10.99 -0.08 6.83 16 20 O -0.54 -9.46 15.43 5.56 0.09 -9.38 16 21 C -0.10 -1.04 2.47 -91.56 -0.23 -1.26 16 22 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 23 C -0.10 -0.94 4.65 -26.52 -0.12 -1.07 16 24 C -0.04 -0.35 6.31 -27.57 -0.17 -0.52 16 25 C 0.09 0.87 7.10 -82.35 -0.58 0.29 16 26 N -0.29 -3.16 12.68 33.75 0.43 -2.73 16 27 N -0.49 -3.76 7.37 30.35 0.22 -3.53 16 28 H 0.44 1.94 8.96 -182.44 -1.64 0.30 16 29 C 0.06 0.46 11.95 -17.36 -0.21 0.25 16 30 C -0.23 -2.13 5.89 -104.98 -0.62 -2.75 16 31 C -0.03 -0.26 5.40 -27.59 -0.15 -0.41 16 32 H 0.03 0.38 6.58 -51.93 -0.34 0.04 16 33 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 34 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.54 7.36 -51.93 -0.38 0.15 16 38 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.05 1.14 7.93 -51.93 -0.41 0.72 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.09 6.33 -51.93 -0.33 0.77 16 45 H 0.39 4.31 6.29 -40.82 -0.26 4.06 16 46 H 0.08 0.89 7.68 -51.93 -0.40 0.50 16 47 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 48 H 0.09 0.66 8.14 -51.94 -0.42 0.23 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 51 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 52 H 0.08 0.55 7.86 -51.93 -0.41 0.14 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -32.34 395.93 -10.31 -42.65 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -9.80 Total: 3.32 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.16 Total: -3.38 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.63 Total: -55.40 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.34 -10.31 -42.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.126 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds