Wall clock time and date at job start Wed Apr 1 2020 04:12:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53003 * 109.49879 * 2 1
4 4 C 1.53188 * 109.49748 * 239.89929 * 2 1 3
5 5 N 1.46931 * 108.77643 * 294.68745 * 4 2 1
6 6 C 1.36937 * 120.63278 * 126.41392 * 5 4 2
7 7 H 1.07997 * 119.99656 * 207.67900 * 6 5 4
8 8 C 1.38803 * 119.99810 * 27.67585 * 6 5 4
9 9 N 1.31624 * 120.00257 * 17.35669 * 8 6 5
10 10 Si 1.86802 * 119.99921 * 197.35327 * 8 6 5
11 11 H 1.48504 * 109.46740 * 60.00390 * 10 8 6
12 12 H 1.48506 * 109.47209 * 179.97438 * 10 8 6
13 13 H 1.48493 * 109.47220 * 300.00114 * 10 8 6
14 14 C 1.46934 * 118.73762 * 306.39152 * 5 4 2
15 15 C 1.53195 * 108.77326 * 53.60900 * 14 5 4
16 16 C 1.53039 * 109.31392 * 305.36469 * 15 14 5
17 17 H 1.09008 * 109.45142 * 301.35087 * 16 15 14
18 18 N 1.46495 * 109.46292 * 181.39190 * 16 15 14
19 19 C 1.34777 * 120.00819 * 84.92955 * 18 16 15
20 20 O 1.21281 * 119.99033 * 359.97438 * 19 18 16
21 21 C 1.50694 * 120.00310 * 180.02562 * 19 18 16
22 22 H 1.08994 * 109.39102 * 60.12706 * 21 19 18
23 23 C 1.53030 * 109.42939 * 179.97438 * 21 19 18
24 24 C 1.53371 * 109.74676 * 191.80412 * 23 21 19
25 25 C 1.50946 * 108.20598 * 309.34561 * 24 23 21
26 26 N 1.30126 * 128.29099 * 196.64908 * 25 24 23
27 27 N 1.40319 * 108.12489 * 179.86520 * 26 25 24
28 28 H 0.96995 * 126.00054 * 180.02562 * 27 26 25
29 29 C 1.35194 * 107.99391 * 0.04190 * 27 26 25
30 30 C 1.34580 * 107.61596 * 0.03935 * 29 27 26
31 31 C 1.50888 * 128.32288 * 179.71261 * 30 29 27
32 32 H 1.09004 * 109.47606 * 299.94068 * 1 2 3
33 33 H 1.09007 * 109.47007 * 59.93450 * 1 2 3
34 34 H 1.08996 * 109.47803 * 179.97438 * 1 2 3
35 35 H 1.09000 * 109.46806 * 180.02562 * 3 2 1
36 36 H 1.09000 * 109.46484 * 300.06166 * 3 2 1
37 37 H 1.08993 * 109.47042 * 60.06320 * 3 2 1
38 38 H 1.09000 * 109.58838 * 54.47026 * 4 2 1
39 39 H 1.08999 * 109.58605 * 174.76220 * 4 2 1
40 40 H 0.97002 * 119.99983 * 179.97438 * 9 8 6
41 41 H 1.08994 * 109.58746 * 173.39372 * 14 5 4
42 42 H 1.09001 * 109.58690 * 293.68300 * 14 5 4
43 43 H 1.09005 * 109.49577 * 185.41538 * 15 14 5
44 44 H 1.08997 * 109.50167 * 65.31508 * 15 14 5
45 45 H 0.97005 * 119.99559 * 264.92983 * 18 16 15
46 46 H 1.09000 * 109.42191 * 311.88681 * 23 21 19
47 47 H 1.09002 * 109.42557 * 71.71549 * 23 21 19
48 48 H 1.08989 * 109.71611 * 69.02556 * 24 23 21
49 49 H 1.08998 * 109.71249 * 189.67167 * 24 23 21
50 50 H 1.07997 * 126.19292 * 180.02562 * 29 27 26
51 51 H 1.08998 * 109.71669 * 77.06596 * 31 30 29
52 52 H 1.09003 * 109.71742 * 316.41967 * 31 30 29
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0407 1.4423 0.0000
4 6 2.0413 -0.7242 -1.2493
5 7 1.6514 -2.1386 -1.1689
6 6 0.9638 -2.7322 -2.1936
7 1 0.3079 -3.5661 -1.9919
8 6 1.1098 -2.2620 -3.4913
9 7 2.1347 -1.4970 -3.8028
10 14 -0.1480 -2.7150 -4.7960
11 1 -1.4872 -2.2224 -4.3845
12 1 0.2327 -2.0909 -6.0886
13 1 -0.1899 -4.1911 -4.9518
14 6 2.0138 -2.9041 0.0318
15 6 1.5028 -2.1554 1.2668
16 6 2.0406 -0.7227 1.2487
17 1 3.1304 -0.7442 1.2356
18 7 1.5810 -0.0136 2.4453
19 6 2.2696 -0.1215 3.5989
20 8 3.2696 -0.8062 3.6462
21 6 1.7964 0.6075 4.8300
22 1 0.7942 0.2665 5.0896
23 6 2.7493 0.3167 5.9915
24 6 2.1275 0.8038 7.3062
25 6 1.6785 2.2322 7.1148
26 7 1.3791 3.1122 8.0254
27 7 1.0186 4.3042 7.3787
28 1 0.7484 5.1288 7.8121
29 6 1.1135 4.1012 6.0454
30 6 1.5171 2.8316 5.8545
31 6 1.7666 2.1153 4.5501
32 1 -0.3634 0.5129 0.8905
33 1 -0.3633 0.5149 -0.8895
34 1 -0.3634 -1.0276 -0.0005
35 1 3.1307 1.4417 -0.0005
36 1 1.6766 1.9565 -0.8895
37 1 1.6785 1.9559 0.8905
38 1 1.6007 -0.2739 -2.1388
39 1 3.1272 -0.6447 -1.2990
40 1 2.2369 -1.1687 -4.7098
41 1 1.5552 -3.8919 -0.0124
42 1 3.0976 -3.0065 0.0865
43 1 1.8478 -2.6621 2.1681
44 1 0.4131 -2.1350 1.2548
45 1 0.7810 0.5336 2.4075
46 1 2.9303 -0.7565 6.0519
47 1 3.6940 0.8339 5.8237
48 1 1.2708 0.1801 7.5611
49 1 2.8688 0.7551 8.1038
50 1 0.9034 4.8265 5.2734
51 1 2.7232 2.4312 4.1342
52 1 0.9658 2.3430 3.8465
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000941161695.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:12:16
Heat of formation + Delta-G solvation = 21.494040 kcal
Electronic energy + Delta-G solvation = -31768.244162 eV
Core-core repulsion = 27768.048095 eV
Total energy + Delta-G solvation = -4000.196066 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.40207 -41.31160 -39.69141 -37.04939 -36.19800 -34.24733 -33.81737 -33.10249
-31.43929 -31.15436 -29.61282 -28.07632 -27.55813 -26.76504 -25.55740 -24.32526
-22.98156 -22.24779 -21.90262 -21.07786 -19.85449 -19.48312 -18.80035 -18.51051
-17.77622 -16.99640 -16.69734 -16.37669 -15.88798 -15.73284 -15.49613 -15.24875
-15.13862 -14.87044 -14.83914 -14.57554 -14.24601 -14.20040 -13.79033 -13.65401
-13.62082 -13.22541 -12.99864 -12.85764 -12.81402 -12.73482 -12.62171 -12.54138
-12.40684 -12.27006 -11.96601 -11.90399 -11.81044 -11.77056 -11.56855 -11.25566
-11.24141 -11.10589 -10.59978 -10.49232 -10.30458 -9.85557 -9.31731 -8.64525
-7.83477 -5.27930 1.03020 1.49850 1.51022 1.57979 1.76550 1.82112
2.06267 2.30991 2.54237 3.31355 3.46932 3.68211 3.77980 3.84792
3.91673 3.95338 4.05904 4.16723 4.20200 4.36134 4.41216 4.47281
4.50773 4.57246 4.64851 4.68624 4.71832 4.79544 4.85423 4.89459
4.93239 5.02727 5.04563 5.05130 5.08436 5.08855 5.16937 5.20705
5.29429 5.32540 5.37113 5.38836 5.41958 5.49794 5.64436 5.68940
5.74235 5.75578 5.80935 6.42682 6.53522 6.73444 6.78025 7.18794
7.42335 7.88962 8.41908 9.22901
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.023833 B = 0.002412 C = 0.002295
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1174.566854 B =11604.067173 C =12196.455376
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.086 4.086
3 C -0.128 4.128
4 C 0.194 3.806
5 N -0.603 5.603
6 C -0.256 4.256
7 H 0.066 0.934
8 C -0.048 4.048
9 N -0.935 5.935
10 Si 0.963 3.037
11 H -0.275 1.275
12 H -0.296 1.296
13 H -0.279 1.279
14 C 0.143 3.857
15 C -0.127 4.127
16 C 0.176 3.824
17 H 0.050 0.950
18 N -0.705 5.705
19 C 0.516 3.484
20 O -0.584 6.584
21 C -0.094 4.094
22 H 0.117 0.883
23 C -0.091 4.091
24 C -0.035 4.035
25 C 0.070 3.930
26 N -0.329 5.329
27 N -0.480 5.480
28 H 0.451 0.549
29 C 0.078 3.922
30 C -0.256 4.256
31 C -0.023 4.023
32 H 0.074 0.926
33 H 0.042 0.958
34 H 0.049 0.951
35 H 0.038 0.962
36 H 0.053 0.947
37 H 0.081 0.919
38 H 0.063 0.937
39 H -0.017 1.017
40 H 0.249 0.751
41 H 0.055 0.945
42 H 0.002 0.998
43 H 0.057 0.943
44 H 0.074 0.926
45 H 0.411 0.589
46 H 0.074 0.926
47 H 0.058 0.942
48 H 0.096 0.904
49 H 0.088 0.912
50 H 0.214 0.786
51 H 0.067 0.933
52 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.899 13.865 21.026 25.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.088 4.088
3 C -0.186 4.186
4 C 0.067 3.933
5 N -0.325 5.325
6 C -0.386 4.386
7 H 0.083 0.917
8 C -0.243 4.243
9 N -0.581 5.581
10 Si 0.792 3.208
11 H -0.201 1.201
12 H -0.223 1.223
13 H -0.205 1.205
14 C 0.017 3.983
15 C -0.167 4.167
16 C 0.071 3.929
17 H 0.068 0.932
18 N -0.357 5.357
19 C 0.304 3.696
20 O -0.464 6.464
21 C -0.115 4.115
22 H 0.135 0.865
23 C -0.130 4.130
24 C -0.074 4.074
25 C -0.097 4.097
26 N -0.152 5.152
27 N -0.190 5.190
28 H 0.297 0.703
29 C -0.068 4.068
30 C -0.267 4.267
31 C -0.061 4.061
32 H 0.093 0.907
33 H 0.061 0.939
34 H 0.068 0.932
35 H 0.058 0.942
36 H 0.072 0.928
37 H 0.100 0.900
38 H 0.081 0.919
39 H 0.001 0.999
40 H 0.058 0.942
41 H 0.074 0.926
42 H 0.019 0.981
43 H 0.076 0.924
44 H 0.092 0.908
45 H 0.249 0.751
46 H 0.093 0.907
47 H 0.077 0.923
48 H 0.115 0.885
49 H 0.106 0.894
50 H 0.231 0.769
51 H 0.086 0.914
52 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -5.265 13.671 22.141 26.549
hybrid contribution -0.329 0.011 -1.856 1.885
sum -5.594 13.682 20.285 25.099
Atomic orbital electron populations
1.21664 0.93247 1.01728 1.01052 1.21314 0.97250 0.95718 0.94537
1.21720 1.00110 0.94354 1.02410 1.20624 0.94032 0.83467 0.95137
1.44268 1.65153 1.06594 1.16510 1.19419 1.17698 1.14931 0.86581
0.91660 1.25723 0.98635 1.01135 0.98817 1.70186 1.29102 1.39979
1.18844 0.85408 0.79431 0.77771 0.78235 1.20107 1.22275 1.20530
1.20967 0.95728 0.94764 0.86869 1.22235 1.01364 0.95769 0.97364
1.20532 0.97413 0.91075 0.83876 0.93176 1.46078 1.30144 1.50231
1.09245 1.21124 0.82728 0.80628 0.85143 1.90692 1.27680 1.42691
1.85368 1.21333 1.02187 0.96297 0.91708 0.86536 1.21294 0.97712
1.01868 0.92115 1.20148 1.01442 0.87735 0.98032 1.22656 0.98475
0.97083 0.91530 1.76946 1.23197 0.93101 1.21950 1.46391 1.55271
1.12452 1.04881 0.70259 1.22646 0.98934 0.98015 0.87237 1.20149
1.15549 0.95524 0.95499 1.19883 1.02796 0.90065 0.93406 0.90741
0.93911 0.93233 0.94231 0.92763 0.90040 0.91908 0.99890 0.94174
0.92607 0.98050 0.92403 0.90783 0.75087 0.90743 0.92339 0.88529
0.89400 0.76900 0.91433 0.88292
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.60 7.83 71.98 0.56 -3.04 16
2 C -0.09 -2.89 0.56 -52.10 -0.03 -2.92 16
3 C -0.13 -3.58 8.31 71.98 0.60 -2.98 16
4 C 0.19 9.05 3.99 86.36 0.34 9.39 16
5 N -0.60 -29.72 2.43 -699.08 -1.70 -31.42 16
6 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16
7 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16
8 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16
9 N -0.93 -54.71 11.19 21.65 0.24 -54.47 16
10 Si 0.96 44.15 29.59 68.60 2.03 46.18 16
11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16
12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16
13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
14 C 0.14 6.16 6.52 86.36 0.56 6.72 16
15 C -0.13 -4.43 5.31 30.67 0.16 -4.26 16
16 C 0.18 5.71 1.57 45.02 0.07 5.78 16
17 H 0.05 1.97 7.58 -2.38 -0.02 1.95 16
18 N -0.71 -16.57 4.19 -442.41 -1.85 -18.43 16
19 C 0.52 12.91 7.10 87.66 0.62 13.53 16
20 O -0.58 -20.25 15.43 -3.03 -0.05 -20.30 16
21 C -0.09 -1.62 2.47 -11.40 -0.03 -1.65 16
22 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16
23 C -0.09 -1.70 4.65 30.73 0.14 -1.56 16
24 C -0.03 -0.55 6.31 30.05 0.19 -0.36 16
25 C 0.07 1.30 7.10 43.44 0.31 1.61 16
26 N -0.33 -6.54 12.68 -47.14 -0.60 -7.13 16
27 N -0.48 -6.08 7.37 -57.88 -0.43 -6.51 16
28 H 0.45 2.77 8.96 -213.18 -1.91 0.86 16
29 C 0.08 0.84 11.95 83.34 1.00 1.83 16
30 C -0.26 -3.88 5.89 -20.09 -0.12 -3.99 16
31 C -0.02 -0.32 5.40 30.04 0.16 -0.16 16
32 H 0.07 1.56 6.58 -2.38 -0.02 1.55 16
33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16
34 H 0.05 1.72 5.97 -2.39 -0.01 1.70 16
35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16
36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16
37 H 0.08 1.66 7.36 -2.39 -0.02 1.64 16
38 H 0.06 3.31 6.04 -2.39 -0.01 3.29 16
39 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16
40 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16
41 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16
42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16
44 H 0.07 2.44 6.33 -2.39 -0.02 2.42 16
45 H 0.41 7.05 6.29 -92.70 -0.58 6.47 16
46 H 0.07 1.54 7.68 -2.39 -0.02 1.52 16
47 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16
48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
50 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16
51 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16
52 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16
Total: -1.00 -73.87 395.93 1.86 -72.01
By element:
Atomic # 1 Polarization: 18.86 SS G_CDS: -1.55 Total: 17.30 kcal
Atomic # 6 Polarization: -3.01 SS G_CDS: 5.77 Total: 2.76 kcal
Atomic # 7 Polarization: -113.62 SS G_CDS: -4.34 Total: -117.96 kcal
Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal
Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal
Total: -73.87 1.86 -72.01 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000941161695.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.507 kcal
(2) G-P(sol) polarization free energy of solvation -73.875 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.632 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds