Wall clock time and date at job start Wed Apr 1 2020 04:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.49879 * 2 1 4 4 C 1.53188 * 109.49748 * 239.89929 * 2 1 3 5 5 N 1.46931 * 108.77643 * 294.68745 * 4 2 1 6 6 C 1.36937 * 120.63278 * 126.41392 * 5 4 2 7 7 H 1.07997 * 119.99656 * 207.67900 * 6 5 4 8 8 C 1.38803 * 119.99810 * 27.67585 * 6 5 4 9 9 N 1.31624 * 120.00257 * 17.35669 * 8 6 5 10 10 Si 1.86802 * 119.99921 * 197.35327 * 8 6 5 11 11 H 1.48504 * 109.46740 * 60.00390 * 10 8 6 12 12 H 1.48506 * 109.47209 * 179.97438 * 10 8 6 13 13 H 1.48493 * 109.47220 * 300.00114 * 10 8 6 14 14 C 1.46934 * 118.73762 * 306.39152 * 5 4 2 15 15 C 1.53195 * 108.77326 * 53.60900 * 14 5 4 16 16 C 1.53039 * 109.31392 * 305.36469 * 15 14 5 17 17 H 1.09008 * 109.45142 * 301.35087 * 16 15 14 18 18 N 1.46495 * 109.46292 * 181.39190 * 16 15 14 19 19 C 1.34777 * 120.00819 * 84.92955 * 18 16 15 20 20 O 1.21281 * 119.99033 * 359.97438 * 19 18 16 21 21 C 1.50694 * 120.00310 * 180.02562 * 19 18 16 22 22 H 1.08994 * 109.39102 * 60.12706 * 21 19 18 23 23 C 1.53030 * 109.42939 * 179.97438 * 21 19 18 24 24 C 1.53371 * 109.74676 * 191.80412 * 23 21 19 25 25 C 1.50946 * 108.20598 * 309.34561 * 24 23 21 26 26 N 1.30126 * 128.29099 * 196.64908 * 25 24 23 27 27 N 1.40319 * 108.12489 * 179.86520 * 26 25 24 28 28 H 0.96995 * 126.00054 * 180.02562 * 27 26 25 29 29 C 1.35194 * 107.99391 * 0.04190 * 27 26 25 30 30 C 1.34580 * 107.61596 * 0.03935 * 29 27 26 31 31 C 1.50888 * 128.32288 * 179.71261 * 30 29 27 32 32 H 1.09004 * 109.47606 * 299.94068 * 1 2 3 33 33 H 1.09007 * 109.47007 * 59.93450 * 1 2 3 34 34 H 1.08996 * 109.47803 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.46806 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46484 * 300.06166 * 3 2 1 37 37 H 1.08993 * 109.47042 * 60.06320 * 3 2 1 38 38 H 1.09000 * 109.58838 * 54.47026 * 4 2 1 39 39 H 1.08999 * 109.58605 * 174.76220 * 4 2 1 40 40 H 0.97002 * 119.99983 * 179.97438 * 9 8 6 41 41 H 1.08994 * 109.58746 * 173.39372 * 14 5 4 42 42 H 1.09001 * 109.58690 * 293.68300 * 14 5 4 43 43 H 1.09005 * 109.49577 * 185.41538 * 15 14 5 44 44 H 1.08997 * 109.50167 * 65.31508 * 15 14 5 45 45 H 0.97005 * 119.99559 * 264.92983 * 18 16 15 46 46 H 1.09000 * 109.42191 * 311.88681 * 23 21 19 47 47 H 1.09002 * 109.42557 * 71.71549 * 23 21 19 48 48 H 1.08989 * 109.71611 * 69.02556 * 24 23 21 49 49 H 1.08998 * 109.71249 * 189.67167 * 24 23 21 50 50 H 1.07997 * 126.19292 * 180.02562 * 29 27 26 51 51 H 1.08998 * 109.71669 * 77.06596 * 31 30 29 52 52 H 1.09003 * 109.71742 * 316.41967 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 1.6514 -2.1386 -1.1689 6 6 0.9638 -2.7322 -2.1936 7 1 0.3079 -3.5661 -1.9919 8 6 1.1098 -2.2620 -3.4913 9 7 2.1347 -1.4970 -3.8028 10 14 -0.1480 -2.7150 -4.7960 11 1 -1.4872 -2.2224 -4.3845 12 1 0.2327 -2.0909 -6.0886 13 1 -0.1899 -4.1911 -4.9518 14 6 2.0138 -2.9041 0.0318 15 6 1.5028 -2.1554 1.2668 16 6 2.0406 -0.7227 1.2487 17 1 3.1304 -0.7442 1.2356 18 7 1.5810 -0.0136 2.4453 19 6 2.2696 -0.1215 3.5989 20 8 3.2696 -0.8062 3.6462 21 6 1.7964 0.6075 4.8300 22 1 0.7942 0.2665 5.0896 23 6 2.7493 0.3167 5.9915 24 6 2.1275 0.8038 7.3062 25 6 1.6785 2.2322 7.1148 26 7 1.3791 3.1122 8.0254 27 7 1.0186 4.3042 7.3787 28 1 0.7484 5.1288 7.8121 29 6 1.1135 4.1012 6.0454 30 6 1.5171 2.8316 5.8545 31 6 1.7666 2.1153 4.5501 32 1 -0.3634 0.5129 0.8905 33 1 -0.3633 0.5149 -0.8895 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1307 1.4417 -0.0005 36 1 1.6766 1.9565 -0.8895 37 1 1.6785 1.9559 0.8905 38 1 1.6007 -0.2739 -2.1388 39 1 3.1272 -0.6447 -1.2990 40 1 2.2369 -1.1687 -4.7098 41 1 1.5552 -3.8919 -0.0124 42 1 3.0976 -3.0065 0.0865 43 1 1.8478 -2.6621 2.1681 44 1 0.4131 -2.1350 1.2548 45 1 0.7810 0.5336 2.4075 46 1 2.9303 -0.7565 6.0519 47 1 3.6940 0.8339 5.8237 48 1 1.2708 0.1801 7.5611 49 1 2.8688 0.7551 8.1038 50 1 0.9034 4.8265 5.2734 51 1 2.7232 2.4312 4.1342 52 1 0.9658 2.3430 3.8465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941161695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:16 Heat of formation + Delta-G solvation = 21.494040 kcal Electronic energy + Delta-G solvation = -31768.244162 eV Core-core repulsion = 27768.048095 eV Total energy + Delta-G solvation = -4000.196066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.40207 -41.31160 -39.69141 -37.04939 -36.19800 -34.24733 -33.81737 -33.10249 -31.43929 -31.15436 -29.61282 -28.07632 -27.55813 -26.76504 -25.55740 -24.32526 -22.98156 -22.24779 -21.90262 -21.07786 -19.85449 -19.48312 -18.80035 -18.51051 -17.77622 -16.99640 -16.69734 -16.37669 -15.88798 -15.73284 -15.49613 -15.24875 -15.13862 -14.87044 -14.83914 -14.57554 -14.24601 -14.20040 -13.79033 -13.65401 -13.62082 -13.22541 -12.99864 -12.85764 -12.81402 -12.73482 -12.62171 -12.54138 -12.40684 -12.27006 -11.96601 -11.90399 -11.81044 -11.77056 -11.56855 -11.25566 -11.24141 -11.10589 -10.59978 -10.49232 -10.30458 -9.85557 -9.31731 -8.64525 -7.83477 -5.27930 1.03020 1.49850 1.51022 1.57979 1.76550 1.82112 2.06267 2.30991 2.54237 3.31355 3.46932 3.68211 3.77980 3.84792 3.91673 3.95338 4.05904 4.16723 4.20200 4.36134 4.41216 4.47281 4.50773 4.57246 4.64851 4.68624 4.71832 4.79544 4.85423 4.89459 4.93239 5.02727 5.04563 5.05130 5.08436 5.08855 5.16937 5.20705 5.29429 5.32540 5.37113 5.38836 5.41958 5.49794 5.64436 5.68940 5.74235 5.75578 5.80935 6.42682 6.53522 6.73444 6.78025 7.18794 7.42335 7.88962 8.41908 9.22901 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.002412 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.566854 B =11604.067173 C =12196.455376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.086 4.086 3 C -0.128 4.128 4 C 0.194 3.806 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.275 1.275 12 H -0.296 1.296 13 H -0.279 1.279 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.050 0.950 18 N -0.705 5.705 19 C 0.516 3.484 20 O -0.584 6.584 21 C -0.094 4.094 22 H 0.117 0.883 23 C -0.091 4.091 24 C -0.035 4.035 25 C 0.070 3.930 26 N -0.329 5.329 27 N -0.480 5.480 28 H 0.451 0.549 29 C 0.078 3.922 30 C -0.256 4.256 31 C -0.023 4.023 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.063 0.937 39 H -0.017 1.017 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.002 0.998 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.411 0.589 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.214 0.786 51 H 0.067 0.933 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 13.865 21.026 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.088 4.088 3 C -0.186 4.186 4 C 0.067 3.933 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.205 1.205 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.071 3.929 17 H 0.068 0.932 18 N -0.357 5.357 19 C 0.304 3.696 20 O -0.464 6.464 21 C -0.115 4.115 22 H 0.135 0.865 23 C -0.130 4.130 24 C -0.074 4.074 25 C -0.097 4.097 26 N -0.152 5.152 27 N -0.190 5.190 28 H 0.297 0.703 29 C -0.068 4.068 30 C -0.267 4.267 31 C -0.061 4.061 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.001 0.999 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.249 0.751 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.115 0.885 49 H 0.106 0.894 50 H 0.231 0.769 51 H 0.086 0.914 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.265 13.671 22.141 26.549 hybrid contribution -0.329 0.011 -1.856 1.885 sum -5.594 13.682 20.285 25.099 Atomic orbital electron populations 1.21664 0.93247 1.01728 1.01052 1.21314 0.97250 0.95718 0.94537 1.21720 1.00110 0.94354 1.02410 1.20624 0.94032 0.83467 0.95137 1.44268 1.65153 1.06594 1.16510 1.19419 1.17698 1.14931 0.86581 0.91660 1.25723 0.98635 1.01135 0.98817 1.70186 1.29102 1.39979 1.18844 0.85408 0.79431 0.77771 0.78235 1.20107 1.22275 1.20530 1.20967 0.95728 0.94764 0.86869 1.22235 1.01364 0.95769 0.97364 1.20532 0.97413 0.91075 0.83876 0.93176 1.46078 1.30144 1.50231 1.09245 1.21124 0.82728 0.80628 0.85143 1.90692 1.27680 1.42691 1.85368 1.21333 1.02187 0.96297 0.91708 0.86536 1.21294 0.97712 1.01868 0.92115 1.20148 1.01442 0.87735 0.98032 1.22656 0.98475 0.97083 0.91530 1.76946 1.23197 0.93101 1.21950 1.46391 1.55271 1.12452 1.04881 0.70259 1.22646 0.98934 0.98015 0.87237 1.20149 1.15549 0.95524 0.95499 1.19883 1.02796 0.90065 0.93406 0.90741 0.93911 0.93233 0.94231 0.92763 0.90040 0.91908 0.99890 0.94174 0.92607 0.98050 0.92403 0.90783 0.75087 0.90743 0.92339 0.88529 0.89400 0.76900 0.91433 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.60 7.83 71.98 0.56 -3.04 16 2 C -0.09 -2.89 0.56 -52.10 -0.03 -2.92 16 3 C -0.13 -3.58 8.31 71.98 0.60 -2.98 16 4 C 0.19 9.05 3.99 86.36 0.34 9.39 16 5 N -0.60 -29.72 2.43 -699.08 -1.70 -31.42 16 6 C -0.26 -13.79 9.58 84.03 0.81 -12.99 16 7 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 8 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 9 N -0.93 -54.71 11.19 21.65 0.24 -54.47 16 10 Si 0.96 44.15 29.59 68.60 2.03 46.18 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.14 6.16 6.52 86.36 0.56 6.72 16 15 C -0.13 -4.43 5.31 30.67 0.16 -4.26 16 16 C 0.18 5.71 1.57 45.02 0.07 5.78 16 17 H 0.05 1.97 7.58 -2.38 -0.02 1.95 16 18 N -0.71 -16.57 4.19 -442.41 -1.85 -18.43 16 19 C 0.52 12.91 7.10 87.66 0.62 13.53 16 20 O -0.58 -20.25 15.43 -3.03 -0.05 -20.30 16 21 C -0.09 -1.62 2.47 -11.40 -0.03 -1.65 16 22 H 0.12 1.62 8.10 -2.39 -0.02 1.60 16 23 C -0.09 -1.70 4.65 30.73 0.14 -1.56 16 24 C -0.03 -0.55 6.31 30.05 0.19 -0.36 16 25 C 0.07 1.30 7.10 43.44 0.31 1.61 16 26 N -0.33 -6.54 12.68 -47.14 -0.60 -7.13 16 27 N -0.48 -6.08 7.37 -57.88 -0.43 -6.51 16 28 H 0.45 2.77 8.96 -213.18 -1.91 0.86 16 29 C 0.08 0.84 11.95 83.34 1.00 1.83 16 30 C -0.26 -3.88 5.89 -20.09 -0.12 -3.99 16 31 C -0.02 -0.32 5.40 30.04 0.16 -0.16 16 32 H 0.07 1.56 6.58 -2.38 -0.02 1.55 16 33 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.05 1.72 5.97 -2.39 -0.01 1.70 16 35 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.08 1.66 7.36 -2.39 -0.02 1.64 16 38 H 0.06 3.31 6.04 -2.39 -0.01 3.29 16 39 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 41 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.07 2.44 6.33 -2.39 -0.02 2.42 16 45 H 0.41 7.05 6.29 -92.70 -0.58 6.47 16 46 H 0.07 1.54 7.68 -2.39 -0.02 1.52 16 47 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 51 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 52 H 0.10 0.90 7.86 -2.39 -0.02 0.88 16 Total: -1.00 -73.87 395.93 1.86 -72.01 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -1.55 Total: 17.30 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.77 Total: 2.76 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.34 Total: -117.96 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.05 Total: -20.30 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.87 1.86 -72.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.507 kcal (2) G-P(sol) polarization free energy of solvation -73.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds