Wall clock time and date at job start Wed Apr 1 2020 04:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99842 * 2 1 4 4 C 1.38456 * 111.00028 * 123.94888 * 2 1 3 5 5 C 1.39503 * 120.95488 * 300.00645 * 4 2 1 6 6 C 1.37763 * 119.21207 * 180.02562 * 5 4 2 7 7 N 1.32179 * 121.22254 * 359.97438 * 6 5 4 8 8 C 1.31637 * 122.11972 * 0.02562 * 7 6 5 9 9 C 1.39534 * 120.62407 * 359.71234 * 8 7 6 10 10 C 1.47447 * 120.63898 * 180.28913 * 9 8 7 11 11 O 1.21596 * 120.00678 * 180.27068 * 10 9 8 12 12 N 1.34779 * 119.99698 * 0.26913 * 10 9 8 13 13 C 1.46507 * 119.99983 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.45620 * 34.97283 * 13 12 10 15 15 C 1.53042 * 109.45871 * 275.00049 * 13 12 10 16 16 C 1.53186 * 109.31160 * 178.61409 * 15 13 12 17 17 N 1.46931 * 108.77576 * 54.63473 * 16 15 13 18 18 C 1.36932 * 120.63110 * 126.41303 * 17 16 15 19 19 H 1.08001 * 120.00066 * 331.82593 * 18 17 16 20 20 C 1.38817 * 120.00086 * 151.82131 * 18 17 16 21 21 N 1.31621 * 119.99920 * 343.07263 * 20 18 17 22 22 Si 1.86800 * 119.99784 * 163.06298 * 20 18 17 23 23 H 1.48499 * 109.47325 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46633 * 120.00671 * 22 20 18 25 25 H 1.48497 * 109.47271 * 240.00245 * 22 20 18 26 26 C 1.46928 * 118.73884 * 306.38836 * 17 16 15 27 27 C 1.53043 * 109.45782 * 154.93294 * 13 12 10 28 28 C 1.52995 * 109.49671 * 301.33562 * 27 13 12 29 29 C 1.53001 * 109.49865 * 61.43577 * 27 13 12 30 30 H 1.09000 * 109.46779 * 60.00697 * 1 2 3 31 31 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47272 * 300.00511 * 1 2 3 33 33 H 1.08999 * 109.46972 * 59.99553 * 3 2 1 34 34 H 1.08998 * 109.47148 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47092 * 299.99432 * 3 2 1 36 36 H 1.08001 * 120.39087 * 359.97438 * 5 4 2 37 37 H 1.08003 * 119.38949 * 179.97438 * 6 5 4 38 38 H 1.07993 * 119.68795 * 180.02562 * 8 7 6 39 39 H 0.97001 * 120.00050 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.49536 * 298.56205 * 15 13 12 41 41 H 1.08998 * 109.49434 * 58.63230 * 15 13 12 42 42 H 1.08993 * 109.58952 * 174.42011 * 16 15 13 43 43 H 1.09004 * 109.58995 * 294.70742 * 16 15 13 44 44 H 0.96996 * 119.99625 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.59014 * 173.39294 * 26 17 16 46 46 H 1.08996 * 109.59168 * 293.68249 * 26 17 16 47 47 H 1.08998 * 109.47595 * 60.00588 * 28 27 13 48 48 H 1.08997 * 109.47303 * 180.02562 * 28 27 13 49 49 H 1.09008 * 109.47157 * 300.00212 * 28 27 13 50 50 H 1.08992 * 109.46992 * 59.99845 * 29 27 13 51 51 H 1.08996 * 109.46765 * 179.97438 * 29 27 13 52 52 H 1.09005 * 109.46660 * 299.99585 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9652 -0.7219 1.0723 5 6 1.6638 -0.3563 2.3844 6 6 2.1773 -1.0998 3.4243 7 7 2.9476 -2.1503 3.2005 8 6 3.2638 -2.5398 1.9835 9 6 2.7846 -1.8499 0.8693 10 6 3.1334 -2.2897 -0.4941 11 8 2.7134 -1.6770 -1.4568 12 7 3.9179 -3.3708 -0.6734 13 6 4.2651 -3.8075 -2.0281 14 1 4.3778 -2.9359 -2.6728 15 6 3.1531 -4.7057 -2.5748 16 6 3.5030 -5.1322 -4.0039 17 7 4.8340 -5.7545 -3.9992 18 6 5.0227 -7.0021 -4.5313 19 1 4.2105 -7.7139 -4.5402 20 6 6.2580 -7.3519 -5.0592 21 7 7.1351 -6.4168 -5.3571 22 14 6.6755 -9.1498 -5.3466 23 1 5.5281 -9.9968 -4.9329 24 1 6.9571 -9.3682 -6.7883 25 1 7.8733 -9.5137 -4.5478 26 6 5.9587 -5.0126 -3.4133 27 6 5.5813 -4.5875 -1.9907 28 6 6.6851 -3.6992 -1.4134 29 6 5.4138 -5.8301 -1.1139 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6458 1.8948 0.8899 34 1 3.0850 1.3424 0.0005 35 1 1.6460 1.8948 -0.8900 36 1 1.0360 0.4999 2.5825 37 1 1.9461 -0.8191 4.4413 38 1 3.8961 -3.4045 1.8460 39 1 4.2534 -3.8594 0.0946 40 1 3.0568 -5.5899 -1.9446 41 1 2.2112 -4.1572 -2.5787 42 1 2.7653 -5.8501 -4.3620 43 1 3.5084 -4.2581 -4.6552 44 1 7.9983 -6.6613 -5.7256 45 1 6.8412 -5.6516 -3.3816 46 1 6.1684 -4.1298 -4.0172 47 1 6.4148 -3.3946 -0.4023 48 1 7.6223 -4.2549 -1.3874 49 1 6.8046 -2.8150 -2.0396 50 1 4.6283 -6.4629 -1.5268 51 1 6.3513 -6.3855 -1.0880 52 1 5.1425 -5.5272 -0.1026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941170522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:16 Heat of formation + Delta-G solvation = 44.626631 kcal Electronic energy + Delta-G solvation = -32107.146573 eV Core-core repulsion = 28107.953611 eV Total energy + Delta-G solvation = -3999.192962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.08603 -39.57297 -37.82329 -37.59251 -34.50720 -32.92942 -32.17900 -31.52420 -31.35026 -29.25814 -27.89810 -26.73628 -25.97690 -25.69844 -25.09376 -24.23121 -22.33902 -21.68089 -20.57403 -20.28841 -18.57794 -17.64838 -17.19800 -17.02668 -16.39088 -15.55889 -15.34396 -15.11477 -14.85473 -14.79144 -14.54258 -14.26614 -13.98552 -13.79635 -13.64918 -13.48407 -13.24421 -13.08880 -12.70596 -12.64240 -12.53764 -12.26179 -12.24475 -12.00798 -11.60697 -11.46396 -11.27143 -11.02519 -10.85948 -10.64791 -10.55504 -10.25363 -10.15222 -10.05905 -9.91631 -9.84259 -9.66186 -9.55620 -9.48093 -9.35111 -8.61509 -8.56817 -8.41555 -6.63989 -5.77232 -3.19007 0.44373 0.76634 2.95800 3.35244 3.38810 3.43162 3.46335 3.48085 3.70038 4.01176 4.43974 4.51075 4.56628 4.66695 4.87391 4.94214 5.05111 5.18105 5.21370 5.23516 5.27340 5.31415 5.32723 5.44932 5.59320 5.60733 5.61336 5.62581 5.78472 5.92506 5.99060 6.12187 6.13926 6.14715 6.27112 6.35269 6.45335 6.52195 6.54561 6.56217 6.69220 6.75380 6.86899 6.95386 6.99366 7.04166 7.09578 7.35540 7.55446 7.65052 7.79724 7.84282 8.46969 8.52868 9.23339 9.86651 10.43915 11.31369 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020550 B = 0.002730 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.176561 B =10253.089878 C =10780.034625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.493 5.493 3 C 0.036 3.964 4 C 0.192 3.808 5 C -0.216 4.216 6 C 0.124 3.876 7 N -0.490 5.490 8 C 0.139 3.861 9 C -0.163 4.163 10 C 0.553 3.447 11 O -0.498 6.498 12 N -0.721 5.721 13 C 0.167 3.833 14 H 0.081 0.919 15 C -0.142 4.142 16 C 0.147 3.853 17 N -0.590 5.590 18 C -0.248 4.248 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.187 3.813 27 C -0.097 4.097 28 C -0.133 4.133 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.028 0.972 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.161 0.839 39 H 0.391 0.609 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.019 0.981 44 H 0.253 0.747 45 H 0.092 0.908 46 H 0.019 0.981 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.052 0.948 52 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 13.286 17.278 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.213 5.213 3 C -0.111 4.111 4 C 0.088 3.912 5 C -0.238 4.238 6 C -0.032 4.032 7 N -0.199 5.199 8 C -0.021 4.021 9 C -0.170 4.170 10 C 0.337 3.663 11 O -0.372 6.372 12 N -0.373 5.373 13 C 0.064 3.936 14 H 0.099 0.901 15 C -0.182 4.182 16 C 0.021 3.979 17 N -0.312 5.312 18 C -0.378 4.378 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.061 3.939 27 C -0.100 4.100 28 C -0.191 4.191 29 C -0.184 4.184 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.110 0.890 46 H 0.037 0.963 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.089 0.911 51 H 0.071 0.929 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.352 13.027 16.706 23.157 hybrid contribution -0.141 -0.223 0.294 0.395 sum -9.492 12.804 17.001 23.304 Atomic orbital electron populations 1.22427 0.85043 1.02719 1.01073 1.59090 1.08485 1.14116 1.39582 1.22405 1.01078 0.86544 1.01047 1.19092 0.91386 0.91662 0.89081 1.22733 1.04160 1.03071 0.93877 1.22734 0.91256 0.89728 0.99478 1.67693 1.13350 1.14783 1.24045 1.23049 0.94899 0.97356 0.86751 1.21304 1.02001 0.97829 0.95830 1.17751 0.79698 0.80999 0.87812 1.90842 1.51364 1.54211 1.40793 1.46315 1.51344 1.29595 1.10059 1.20973 0.94403 0.96952 0.81285 0.90055 1.22435 0.97240 0.98810 0.99710 1.20869 0.88822 0.95988 0.92269 1.44055 1.03048 1.16847 1.67201 1.19194 0.97556 0.88586 1.32438 0.91704 1.25028 0.98703 0.97332 0.98507 1.70034 1.07955 1.30705 1.45953 0.86275 0.78087 0.85314 0.77422 1.20293 1.21817 1.21626 1.20806 0.92178 0.95300 0.85659 1.21568 0.92915 0.94620 1.00878 1.21758 0.98567 0.99403 0.99415 1.21746 1.02700 0.97641 0.96333 0.90224 0.91161 0.95338 0.95360 0.91161 0.90223 0.84569 0.82430 0.82171 0.77363 0.91935 0.92770 0.92693 0.96277 0.93724 0.88989 0.96275 0.93888 0.92621 0.93071 0.91062 0.92923 0.95255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.29 60.06 0.56 0.87 16 2 N -0.49 -5.71 3.08 -186.41 -0.57 -6.28 16 3 C 0.04 0.33 9.33 60.07 0.56 0.89 16 4 C 0.19 2.19 4.71 -83.40 -0.39 1.80 16 5 C -0.22 -1.88 8.74 -39.28 -0.34 -2.23 16 6 C 0.12 1.07 11.15 -17.58 -0.20 0.87 16 7 N -0.49 -5.27 10.34 -13.01 -0.13 -5.40 16 8 C 0.14 1.51 10.71 -17.15 -0.18 1.33 16 9 C -0.16 -2.05 5.91 -104.66 -0.62 -2.67 16 10 C 0.55 8.35 7.73 -12.51 -0.10 8.25 16 11 O -0.50 -9.15 14.82 5.28 0.08 -9.07 16 12 N -0.72 -10.23 4.24 -54.83 -0.23 -10.46 16 13 C 0.17 2.87 1.57 -67.88 -0.11 2.76 16 14 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 15 C -0.14 -2.56 5.31 -26.61 -0.14 -2.70 16 16 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 17 N -0.59 -14.26 2.43 -172.32 -0.42 -14.68 16 18 C -0.25 -6.61 9.58 -15.06 -0.14 -6.76 16 19 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -25.67 11.20 55.49 0.62 -25.05 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.19 4.27 3.98 -3.71 -0.01 4.25 16 27 C -0.10 -1.72 0.56 -154.39 -0.09 -1.81 16 28 C -0.13 -2.08 8.31 37.16 0.31 -1.77 16 29 C -0.13 -2.11 7.83 37.16 0.29 -1.82 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 32 H 0.03 0.20 7.33 -51.93 -0.38 -0.18 16 33 H 0.03 0.20 7.54 -51.93 -0.39 -0.19 16 34 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.14 0.87 7.22 -52.49 -0.38 0.49 16 37 H 0.16 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.16 1.44 6.42 -52.49 -0.34 1.10 16 39 H 0.39 4.69 4.72 -40.82 -0.19 4.49 16 40 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.04 0.57 7.36 -51.93 -0.38 0.19 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 50 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 51 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.03 0.39 6.58 -51.93 -0.34 0.05 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -31.53 399.84 -8.74 -40.27 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.36 Total: 3.93 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -0.72 Total: 4.37 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.74 Total: -61.88 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.53 -8.74 -40.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941170522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.897 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds