Wall clock time and date at job start Wed Apr 1 2020 04:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.52362 * 2 1 4 4 C 1.53194 * 109.49545 * 239.92302 * 2 1 3 5 5 N 1.46926 * 108.77578 * 294.68250 * 4 2 1 6 6 C 1.36934 * 120.62711 * 126.36877 * 5 4 2 7 7 H 1.08002 * 120.00650 * 332.65157 * 6 5 4 8 8 C 1.38813 * 119.99741 * 152.65451 * 6 5 4 9 9 N 1.31617 * 120.00156 * 159.33000 * 8 6 5 10 10 Si 1.86805 * 120.00125 * 339.33555 * 8 6 5 11 11 H 1.48503 * 109.46918 * 92.96172 * 10 8 6 12 12 H 1.48501 * 109.47132 * 212.96694 * 10 8 6 13 13 H 1.48501 * 109.46650 * 332.96794 * 10 8 6 14 14 C 1.46915 * 118.73738 * 306.39179 * 5 4 2 15 15 C 1.53191 * 108.77971 * 53.60553 * 14 5 4 16 16 C 1.53035 * 109.49909 * 120.08430 * 2 1 3 17 17 H 1.09003 * 109.44687 * 178.59622 * 16 2 1 18 18 N 1.46495 * 109.45942 * 298.56236 * 16 2 1 19 19 C 1.34783 * 119.99638 * 205.06542 * 18 16 2 20 20 O 1.21596 * 120.00204 * 0.02562 * 19 18 16 21 21 C 1.47413 * 119.99744 * 180.02562 * 19 18 16 22 22 N 1.31876 * 125.93616 * 0.02869 * 21 19 18 23 23 C 1.33364 * 109.15599 * 179.97438 * 22 21 19 24 24 C 1.34872 * 108.15998 * 359.97438 * 23 22 21 25 25 N 1.35669 * 107.37116 * 0.05950 * 24 23 22 26 26 C 1.46442 * 124.57917 * 179.86051 * 25 24 23 27 27 C 1.53272 * 108.75075 * 342.76593 * 26 25 24 28 28 C 1.53212 * 109.57984 * 50.55680 * 27 26 25 29 29 C 1.50760 * 128.32538 * 180.08954 * 24 23 22 30 30 H 1.09008 * 109.46905 * 299.91433 * 1 2 3 31 31 H 1.08998 * 109.47595 * 59.91661 * 1 2 3 32 32 H 1.08996 * 109.47178 * 179.91542 * 1 2 3 33 33 H 1.08999 * 109.46732 * 180.08452 * 3 2 1 34 34 H 1.08994 * 109.47250 * 300.08775 * 3 2 1 35 35 H 1.08994 * 109.46603 * 60.08639 * 3 2 1 36 36 H 1.08997 * 109.58828 * 174.89016 * 4 2 1 37 37 H 1.09008 * 109.70240 * 54.54051 * 4 2 1 38 38 H 0.97003 * 120.00383 * 179.97438 * 9 8 6 39 39 H 1.09009 * 109.58757 * 293.82101 * 14 5 4 40 40 H 1.09000 * 109.70790 * 173.46784 * 14 5 4 41 41 H 1.08995 * 109.50115 * 185.40998 * 15 14 5 42 42 H 1.09006 * 109.51878 * 65.33290 * 15 14 5 43 43 H 0.96992 * 120.00125 * 25.07290 * 18 16 2 44 44 H 1.08009 * 125.92421 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.59128 * 102.54496 * 26 25 24 46 46 H 1.09009 * 109.59485 * 222.98340 * 26 25 24 47 47 H 1.08999 * 109.45275 * 170.56682 * 27 26 25 48 48 H 1.09006 * 109.44735 * 290.51210 * 27 26 25 49 49 H 1.08993 * 109.49992 * 170.58235 * 28 27 26 50 50 H 1.09001 * 109.54919 * 50.41942 * 28 27 26 51 51 H 1.08997 * 109.73783 * 283.85985 * 29 24 23 52 52 H 1.09004 * 109.73404 * 44.54848 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 1.6515 -2.1381 -1.1697 6 6 0.9630 -2.7310 -2.1943 7 1 0.3289 -2.1357 -2.8345 8 6 1.0801 -4.0972 -2.4099 9 7 0.1537 -4.7378 -3.0909 10 14 2.5524 -5.0269 -1.7333 11 1 2.2162 -5.5816 -0.3974 12 1 2.9040 -6.1362 -2.6558 13 1 3.7072 -4.1017 -1.6087 14 6 2.0140 -2.9039 0.0305 15 6 1.5031 -2.1558 1.2658 16 6 2.0408 -0.7231 1.2482 17 1 3.1306 -0.7445 1.2349 18 7 1.5812 -0.0145 2.4452 19 6 2.2707 -0.1219 3.5983 20 8 3.2745 -0.8066 3.6449 21 6 1.8079 0.5907 4.8029 22 7 0.7404 1.3606 4.8844 23 6 0.6365 1.8347 6.1266 24 6 1.6671 1.3499 6.8491 25 7 2.4079 0.5683 6.0240 26 6 3.6227 -0.1451 6.4239 27 6 4.1416 0.4608 7.7327 28 6 3.0006 0.5336 8.7526 29 6 1.9870 1.5943 8.3019 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1313 1.4410 -0.0015 34 1 1.6772 1.9567 -0.8891 35 1 1.6797 1.9557 0.8907 36 1 3.1274 -0.6462 -1.2982 37 1 1.6027 -0.2736 -2.1403 38 1 0.2356 -5.6925 -3.2419 39 1 3.0980 -3.0042 0.0864 40 1 1.5574 -3.8928 -0.0126 41 1 1.8482 -2.6629 2.1668 42 1 0.4133 -2.1355 1.2545 43 1 0.7806 0.5318 2.4079 44 1 -0.1385 2.4929 6.4910 45 1 3.3941 -1.2000 6.5749 46 1 4.3804 -0.0407 5.6471 47 1 4.9429 -0.1628 8.1288 48 1 4.5229 1.4641 7.5420 49 1 3.4021 0.8053 9.7288 50 1 2.5075 -0.4363 8.8181 51 1 2.4171 2.5886 8.4219 52 1 1.0782 1.5114 8.8980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941230581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:59 Heat of formation + Delta-G solvation = 39.890539 kcal Electronic energy + Delta-G solvation = -31957.709913 eV Core-core repulsion = 27958.311578 eV Total energy + Delta-G solvation = -3999.398334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.73503 -40.02414 -38.19246 -37.08380 -34.85684 -33.37439 -33.08099 -31.74849 -31.05425 -30.20156 -28.37790 -26.91244 -26.35960 -25.41465 -24.59646 -23.32784 -22.23291 -21.97751 -21.17883 -20.28105 -19.45188 -18.62784 -17.51366 -16.73583 -16.50755 -16.27144 -15.76471 -15.08141 -14.90742 -14.62458 -14.53494 -14.34871 -14.28077 -14.13699 -14.06857 -13.88059 -13.63847 -13.45278 -13.19172 -12.73288 -12.40369 -12.34399 -12.02949 -11.75501 -11.63955 -11.59873 -11.54831 -11.46110 -11.28123 -11.20888 -10.81114 -10.51056 -10.39587 -10.34678 -10.24084 -10.02106 -9.93963 -9.89205 -9.67975 -9.47508 -8.87205 -8.60134 -8.50204 -6.95321 -5.92384 -3.27985 1.24828 2.24632 2.43550 3.28973 3.36277 3.38428 3.52101 3.55702 4.02353 4.14223 4.23622 4.28930 4.41666 4.56267 4.82718 4.89558 4.92324 4.94359 4.98003 5.04068 5.20800 5.24235 5.27339 5.28859 5.32071 5.41324 5.44195 5.46408 5.64646 5.72490 5.75837 5.85595 5.95937 6.03388 6.07395 6.11665 6.23363 6.27235 6.34221 6.38287 6.43190 6.50752 6.63571 6.66305 6.70887 6.72948 6.74558 6.80026 7.03842 7.43687 7.75938 7.98097 8.19846 8.35184 8.96065 9.74764 10.12136 11.23428 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002775 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.036850 B =10087.040654 C =10863.408051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.603 5.603 6 C -0.257 4.257 7 H 0.087 0.913 8 C 0.024 3.976 9 N -0.908 5.908 10 Si 0.880 3.120 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.129 3.871 15 C -0.145 4.145 16 C 0.164 3.836 17 H 0.084 0.916 18 N -0.692 5.692 19 C 0.603 3.397 20 O -0.544 6.544 21 C 0.147 3.853 22 N -0.446 5.446 23 C -0.023 4.023 24 C -0.004 4.004 25 N -0.409 5.409 26 C 0.102 3.898 27 C -0.136 4.136 28 C -0.128 4.128 29 C -0.047 4.047 30 H 0.038 0.962 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.069 0.931 38 H 0.262 0.738 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.072 0.928 43 H 0.409 0.591 44 H 0.176 0.824 45 H 0.090 0.910 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.085 0.915 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 15.037 23.949 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 C -0.196 4.196 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.104 0.896 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.711 3.289 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.195 1.195 14 C 0.003 3.997 15 C -0.185 4.185 16 C 0.061 3.939 17 H 0.102 0.898 18 N -0.343 5.343 19 C 0.387 3.613 20 O -0.421 6.421 21 C -0.112 4.112 22 N -0.168 5.168 23 C -0.176 4.176 24 C -0.124 4.124 25 N -0.090 5.090 26 C -0.020 4.020 27 C -0.174 4.174 28 C -0.165 4.165 29 C -0.085 4.085 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.246 0.754 44 H 0.193 0.807 45 H 0.109 0.891 46 H 0.124 0.876 47 H 0.109 0.891 48 H 0.093 0.907 49 H 0.098 0.902 50 H 0.088 0.912 51 H 0.104 0.896 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.412 14.404 23.152 27.799 hybrid contribution 0.890 -0.583 1.078 1.515 sum 6.302 13.821 24.230 28.598 Atomic orbital electron populations 1.21816 0.93828 1.03370 1.00121 1.21353 0.97011 0.94813 0.95941 1.21815 1.00719 0.95593 1.01467 1.20952 0.96391 0.84774 0.94298 1.44351 1.65718 1.06618 1.15868 1.18895 1.19514 0.92081 1.08003 0.89590 1.25263 0.97770 0.96677 0.97799 1.69835 1.32625 1.08791 1.43874 0.86993 0.85607 0.79321 0.76998 1.21680 1.23259 1.19487 1.21305 0.97131 0.95708 0.85522 1.22478 1.01911 0.94781 0.99319 1.21064 0.99369 0.91448 0.82062 0.89760 1.45976 1.29481 1.49695 1.09150 1.16476 0.83219 0.80188 0.81453 1.90803 1.25643 1.41131 1.84548 1.22625 0.94881 1.05818 0.87889 1.70395 1.15364 1.10066 1.20970 1.21989 1.00388 1.05548 0.89660 1.21325 0.96066 1.00077 0.94947 1.44975 1.20865 1.34610 1.08575 1.22182 0.84941 0.96565 0.98291 1.21966 0.98918 1.02560 0.93922 1.21706 0.96037 0.99782 0.99022 1.20299 1.00294 0.99838 0.88094 0.94259 0.92711 0.90473 0.92985 0.92365 0.93031 0.95754 0.91263 0.92820 0.95555 0.90695 0.92449 0.90947 0.75381 0.80658 0.89148 0.87641 0.89146 0.90679 0.90248 0.91165 0.89624 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.83 37.16 0.29 -1.84 16 2 C -0.09 -1.42 0.56 -154.39 -0.09 -1.50 16 3 C -0.14 -1.85 8.31 37.16 0.31 -1.54 16 4 C 0.16 3.12 5.19 -3.71 -0.02 3.10 16 5 N -0.60 -14.00 2.21 -172.32 -0.38 -14.38 16 6 C -0.26 -7.03 10.03 -15.06 -0.15 -7.18 16 7 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 8 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 9 N -0.91 -27.79 13.97 55.49 0.78 -27.01 16 10 Si 0.88 22.64 24.35 -169.99 -4.14 18.50 16 11 H -0.29 -7.25 6.62 56.52 0.37 -6.88 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 13 H -0.27 -6.84 6.63 56.52 0.37 -6.47 16 14 C 0.13 2.88 4.20 -3.72 -0.02 2.86 16 15 C -0.14 -2.73 5.31 -26.61 -0.14 -2.87 16 16 C 0.16 2.74 1.57 -67.90 -0.11 2.63 16 17 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 18 N -0.69 -10.39 4.29 -54.85 -0.24 -10.63 16 19 C 0.60 9.50 7.78 -12.52 -0.10 9.40 16 20 O -0.54 -9.61 14.91 5.28 0.08 -9.53 16 21 C 0.15 2.09 7.82 -154.85 -1.21 0.88 16 22 N -0.45 -6.14 10.92 -11.44 -0.12 -6.26 16 23 C -0.02 -0.25 11.82 -18.08 -0.21 -0.46 16 24 C 0.00 -0.04 6.57 -82.06 -0.54 -0.58 16 25 N -0.41 -4.77 3.14 -110.08 -0.35 -5.12 16 26 C 0.10 0.96 6.10 -3.93 -0.02 0.93 16 27 C -0.14 -0.80 5.93 -26.48 -0.16 -0.96 16 28 C -0.13 -0.65 5.97 -26.37 -0.16 -0.80 16 29 C -0.05 -0.27 6.31 -27.61 -0.17 -0.44 16 30 H 0.04 0.54 6.58 -51.92 -0.34 0.20 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.45 5.97 -51.93 -0.31 1.14 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.32 7.93 -51.92 -0.41 0.91 16 38 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 39 H 0.03 0.59 7.08 -51.92 -0.37 0.23 16 40 H 0.08 1.83 4.50 -51.93 -0.23 1.59 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 43 H 0.41 5.74 6.35 -40.82 -0.26 5.48 16 44 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.11 1.11 7.28 -51.92 -0.38 0.73 16 47 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 51 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -32.72 389.69 -9.59 -42.32 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.51 Total: 4.01 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -2.58 Total: 2.22 kcal Atomic # 7 Polarization: -63.09 SS G_CDS: -0.31 Total: -63.40 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.14 Total: 18.50 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.72 -9.59 -42.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941230581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.209 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds