Wall clock time and date at job start Wed Apr 1 2020 04:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.52362 * 2 1 4 4 C 1.53194 * 109.49545 * 239.92302 * 2 1 3 5 5 N 1.46926 * 108.77578 * 294.68250 * 4 2 1 6 6 C 1.36934 * 120.62711 * 126.36877 * 5 4 2 7 7 H 1.08002 * 120.00650 * 332.65157 * 6 5 4 8 8 C 1.38813 * 119.99741 * 152.65451 * 6 5 4 9 9 N 1.31617 * 120.00156 * 159.33000 * 8 6 5 10 10 Si 1.86805 * 120.00125 * 339.33555 * 8 6 5 11 11 H 1.48503 * 109.46918 * 92.96172 * 10 8 6 12 12 H 1.48501 * 109.47132 * 212.96694 * 10 8 6 13 13 H 1.48501 * 109.46650 * 332.96794 * 10 8 6 14 14 C 1.46915 * 118.73738 * 306.39179 * 5 4 2 15 15 C 1.53191 * 108.77971 * 53.60553 * 14 5 4 16 16 C 1.53035 * 109.49909 * 120.08430 * 2 1 3 17 17 H 1.09003 * 109.44687 * 178.59622 * 16 2 1 18 18 N 1.46495 * 109.45942 * 298.56236 * 16 2 1 19 19 C 1.34783 * 119.99638 * 205.06542 * 18 16 2 20 20 O 1.21596 * 120.00204 * 0.02562 * 19 18 16 21 21 C 1.47413 * 119.99744 * 180.02562 * 19 18 16 22 22 N 1.31876 * 125.93616 * 0.02869 * 21 19 18 23 23 C 1.33364 * 109.15599 * 179.97438 * 22 21 19 24 24 C 1.34872 * 108.15998 * 359.97438 * 23 22 21 25 25 N 1.35669 * 107.37116 * 0.05950 * 24 23 22 26 26 C 1.46442 * 124.57917 * 179.86051 * 25 24 23 27 27 C 1.53272 * 108.75075 * 342.76593 * 26 25 24 28 28 C 1.53212 * 109.57984 * 50.55680 * 27 26 25 29 29 C 1.50760 * 128.32538 * 180.08954 * 24 23 22 30 30 H 1.09008 * 109.46905 * 299.91433 * 1 2 3 31 31 H 1.08998 * 109.47595 * 59.91661 * 1 2 3 32 32 H 1.08996 * 109.47178 * 179.91542 * 1 2 3 33 33 H 1.08999 * 109.46732 * 180.08452 * 3 2 1 34 34 H 1.08994 * 109.47250 * 300.08775 * 3 2 1 35 35 H 1.08994 * 109.46603 * 60.08639 * 3 2 1 36 36 H 1.08997 * 109.58828 * 174.89016 * 4 2 1 37 37 H 1.09008 * 109.70240 * 54.54051 * 4 2 1 38 38 H 0.97003 * 120.00383 * 179.97438 * 9 8 6 39 39 H 1.09009 * 109.58757 * 293.82101 * 14 5 4 40 40 H 1.09000 * 109.70790 * 173.46784 * 14 5 4 41 41 H 1.08995 * 109.50115 * 185.40998 * 15 14 5 42 42 H 1.09006 * 109.51878 * 65.33290 * 15 14 5 43 43 H 0.96992 * 120.00125 * 25.07290 * 18 16 2 44 44 H 1.08009 * 125.92421 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.59128 * 102.54496 * 26 25 24 46 46 H 1.09009 * 109.59485 * 222.98340 * 26 25 24 47 47 H 1.08999 * 109.45275 * 170.56682 * 27 26 25 48 48 H 1.09006 * 109.44735 * 290.51210 * 27 26 25 49 49 H 1.08993 * 109.49992 * 170.58235 * 28 27 26 50 50 H 1.09001 * 109.54919 * 50.41942 * 28 27 26 51 51 H 1.08997 * 109.73783 * 283.85985 * 29 24 23 52 52 H 1.09004 * 109.73404 * 44.54848 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0413 -0.7237 -1.2497 5 7 1.6515 -2.1381 -1.1697 6 6 0.9630 -2.7310 -2.1943 7 1 0.3289 -2.1357 -2.8345 8 6 1.0801 -4.0972 -2.4099 9 7 0.1537 -4.7378 -3.0909 10 14 2.5524 -5.0269 -1.7333 11 1 2.2162 -5.5816 -0.3974 12 1 2.9040 -6.1362 -2.6558 13 1 3.7072 -4.1017 -1.6087 14 6 2.0140 -2.9039 0.0305 15 6 1.5031 -2.1558 1.2658 16 6 2.0408 -0.7231 1.2482 17 1 3.1306 -0.7445 1.2349 18 7 1.5812 -0.0145 2.4452 19 6 2.2707 -0.1219 3.5983 20 8 3.2745 -0.8066 3.6449 21 6 1.8079 0.5907 4.8029 22 7 0.7404 1.3606 4.8844 23 6 0.6365 1.8347 6.1266 24 6 1.6671 1.3499 6.8491 25 7 2.4079 0.5683 6.0240 26 6 3.6227 -0.1451 6.4239 27 6 4.1416 0.4608 7.7327 28 6 3.0006 0.5336 8.7526 29 6 1.9870 1.5943 8.3019 30 1 -0.3633 0.5125 0.8908 31 1 -0.3634 0.5151 -0.8892 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1313 1.4410 -0.0015 34 1 1.6772 1.9567 -0.8891 35 1 1.6797 1.9557 0.8907 36 1 3.1274 -0.6462 -1.2982 37 1 1.6027 -0.2736 -2.1403 38 1 0.2356 -5.6925 -3.2419 39 1 3.0980 -3.0042 0.0864 40 1 1.5574 -3.8928 -0.0126 41 1 1.8482 -2.6629 2.1668 42 1 0.4133 -2.1355 1.2545 43 1 0.7806 0.5318 2.4079 44 1 -0.1385 2.4929 6.4910 45 1 3.3941 -1.2000 6.5749 46 1 4.3804 -0.0407 5.6471 47 1 4.9429 -0.1628 8.1288 48 1 4.5229 1.4641 7.5420 49 1 3.4021 0.8053 9.7288 50 1 2.5075 -0.4363 8.8181 51 1 2.4171 2.5886 8.4219 52 1 1.0782 1.5114 8.8980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941230581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:58 Heat of formation + Delta-G solvation = 19.686873 kcal Electronic energy + Delta-G solvation = -31958.586009 eV Core-core repulsion = 27958.311578 eV Total energy + Delta-G solvation = -4000.274431 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.58336 -41.37757 -39.58612 -37.71503 -36.52051 -34.64372 -33.91347 -33.68061 -32.24179 -31.45305 -29.26218 -28.19932 -27.90711 -26.86894 -25.41039 -24.54344 -23.40410 -22.93806 -22.90286 -21.41029 -20.27416 -19.73109 -18.94067 -18.50653 -17.61866 -17.25109 -17.22312 -16.49721 -16.03181 -15.99585 -15.62190 -15.48276 -15.26661 -15.10555 -15.01154 -14.91279 -14.75042 -14.72022 -14.37256 -14.20563 -14.02041 -13.89675 -13.35090 -13.05788 -13.01521 -12.77709 -12.69247 -12.47136 -12.21694 -12.10284 -12.02950 -11.97109 -11.93772 -11.86407 -11.57792 -11.45688 -11.38648 -11.26062 -11.16081 -10.76052 -10.72113 -10.16977 -9.38694 -8.94146 -8.15759 -5.46501 0.27211 1.28690 1.35265 1.39407 1.47909 1.54436 2.21462 2.31454 2.41179 3.03828 3.21947 3.33940 3.49978 3.57878 3.61561 3.73823 3.81033 3.85013 3.96439 4.15773 4.19070 4.24260 4.30209 4.34594 4.44257 4.45921 4.50088 4.62264 4.67534 4.74239 4.80877 4.82939 4.85218 4.86273 4.88810 4.97469 4.99754 5.06269 5.08405 5.13784 5.18334 5.25424 5.25835 5.32271 5.35502 5.40201 5.61263 5.62626 5.87533 5.88756 6.14444 6.30677 6.77480 6.90390 7.02661 7.62030 8.03490 9.03858 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018538 B = 0.002775 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.036850 B =10087.040654 C =10863.408051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.157 3.843 5 N -0.612 5.612 6 C -0.236 4.236 7 H 0.061 0.939 8 C -0.032 4.032 9 N -0.954 5.954 10 Si 0.936 3.064 11 H -0.282 1.282 12 H -0.311 1.311 13 H -0.263 1.263 14 C 0.128 3.872 15 C -0.134 4.134 16 C 0.175 3.825 17 H 0.075 0.925 18 N -0.685 5.685 19 C 0.603 3.397 20 O -0.571 6.571 21 C 0.106 3.894 22 N -0.461 5.461 23 C -0.041 4.041 24 C 0.012 3.988 25 N -0.411 5.411 26 C 0.095 3.905 27 C -0.129 4.129 28 C -0.125 4.125 29 C -0.047 4.047 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.260 0.740 39 H 0.028 0.972 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.415 0.585 44 H 0.204 0.796 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.109 0.891 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.106 0.894 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 17.568 27.465 33.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.081 4.081 3 C -0.188 4.188 4 C 0.032 3.968 5 N -0.336 5.336 6 C -0.366 4.366 7 H 0.079 0.921 8 C -0.227 4.227 9 N -0.601 5.601 10 Si 0.766 3.234 11 H -0.210 1.210 12 H -0.240 1.240 13 H -0.188 1.188 14 C 0.002 3.998 15 C -0.174 4.174 16 C 0.070 3.930 17 H 0.093 0.907 18 N -0.336 5.336 19 C 0.388 3.612 20 O -0.450 6.450 21 C -0.151 4.151 22 N -0.183 5.183 23 C -0.194 4.194 24 C -0.109 4.109 25 N -0.092 5.092 26 C -0.026 4.026 27 C -0.166 4.166 28 C -0.163 4.163 29 C -0.085 4.085 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.253 0.747 44 H 0.221 0.779 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.127 0.873 48 H 0.096 0.904 49 H 0.125 0.875 50 H 0.081 0.919 51 H 0.124 0.876 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.345 16.974 26.692 32.262 hybrid contribution 0.557 -1.253 0.090 1.374 sum 6.901 15.721 26.783 31.813 Atomic orbital electron populations 1.21739 0.93671 1.01610 1.01533 1.21209 0.96965 0.96118 0.93790 1.21748 1.00942 0.93355 1.02749 1.21159 0.96956 0.82612 0.96080 1.44423 1.65662 1.08204 1.15284 1.18852 1.18194 0.91784 1.07747 0.92139 1.25799 0.99881 0.97795 0.99192 1.69947 1.34449 1.08971 1.46729 0.86071 0.82824 0.78033 0.76445 1.20952 1.23998 1.18764 1.21253 0.96951 0.95063 0.86504 1.22309 1.01523 0.96099 0.97511 1.20782 0.98619 0.90339 0.83222 0.90727 1.45749 1.29674 1.49558 1.08585 1.16699 0.82725 0.79768 0.81972 1.90778 1.26768 1.42358 1.85062 1.22229 0.96480 1.07995 0.88419 1.70321 1.15244 1.10058 1.22692 1.22596 1.01650 1.06179 0.88926 1.22101 0.94643 0.97637 0.96473 1.45192 1.21289 1.34582 1.08118 1.22330 0.83956 0.96581 0.99697 1.21987 0.99738 1.02741 0.92159 1.21734 0.95412 0.99297 0.99863 1.20555 1.01652 1.01019 0.85231 0.91925 0.92246 0.93744 0.92614 0.90983 0.91850 0.94877 0.91300 0.93079 0.95409 0.93050 0.92429 0.91374 0.74658 0.77906 0.89750 0.89403 0.87308 0.90360 0.87518 0.91912 0.87614 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 7.83 71.98 0.56 -3.40 16 2 C -0.08 -2.42 0.56 -52.10 -0.03 -2.45 16 3 C -0.13 -3.17 8.31 71.98 0.60 -2.57 16 4 C 0.16 5.94 5.19 86.36 0.45 6.39 16 5 N -0.61 -28.67 2.21 -699.10 -1.54 -30.22 16 6 C -0.24 -13.25 10.03 84.03 0.84 -12.41 16 7 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 8 C -0.03 -1.88 5.23 84.86 0.44 -1.44 16 9 N -0.95 -60.41 13.97 21.65 0.30 -60.11 16 10 Si 0.94 47.95 24.35 68.60 1.67 49.62 16 11 H -0.28 -13.99 6.62 99.48 0.66 -13.33 16 12 H -0.31 -16.15 7.11 99.48 0.71 -15.44 16 13 H -0.26 -13.00 6.63 99.48 0.66 -12.34 16 14 C 0.13 5.73 4.20 86.36 0.36 6.10 16 15 C -0.13 -5.09 5.31 30.67 0.16 -4.93 16 16 C 0.17 5.72 1.57 45.02 0.07 5.79 16 17 H 0.07 2.64 7.57 -2.39 -0.02 2.63 16 18 N -0.68 -20.05 4.29 -445.71 -1.91 -21.96 16 19 C 0.60 18.88 7.78 86.66 0.67 19.56 16 20 O -0.57 -20.34 14.91 -4.02 -0.06 -20.40 16 21 C 0.11 2.94 7.82 136.40 1.07 4.01 16 22 N -0.46 -12.06 10.92 -190.12 -2.08 -14.13 16 23 C -0.04 -0.79 11.82 83.69 0.99 0.20 16 24 C 0.01 0.21 6.57 41.21 0.27 0.48 16 25 N -0.41 -9.06 3.14 -502.17 -1.58 -10.64 16 26 C 0.10 1.71 6.10 86.48 0.53 2.24 16 27 C -0.13 -1.17 5.93 30.76 0.18 -0.99 16 28 C -0.13 -0.79 5.97 30.83 0.18 -0.61 16 29 C -0.05 -0.34 6.31 30.03 0.19 -0.15 16 30 H 0.06 1.62 6.58 -2.38 -0.02 1.61 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.67 5.97 -2.39 -0.01 1.66 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.42 7.36 -2.39 -0.02 1.40 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 2.59 7.93 -2.38 -0.02 2.58 16 38 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 39 H 0.03 1.24 7.08 -2.38 -0.02 1.23 16 40 H 0.05 2.54 4.50 -2.39 -0.01 2.53 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 2.64 6.34 -2.38 -0.02 2.62 16 43 H 0.42 11.14 6.35 -92.71 -0.59 10.55 16 44 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 45 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.09 1.87 7.28 -2.38 -0.02 1.85 16 47 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.69 8.12 -2.38 -0.02 0.67 16 49 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 50 H 0.06 0.52 8.12 -2.39 -0.02 0.50 16 51 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 52 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -73.67 389.69 2.60 -71.07 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.24 Total: 20.93 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 7.55 Total: 15.83 kcal Atomic # 7 Polarization: -130.26 SS G_CDS: -6.80 Total: -137.06 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.06 Total: -20.40 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.67 Total: 49.62 kcal Total: -73.67 2.60 -71.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941230581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.758 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds