Wall clock time and date at job start Wed Apr 1 2020 04:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.49343 * 2 1 4 4 C 1.52758 * 109.56516 * 240.03209 * 2 1 3 5 5 N 1.46931 * 109.00769 * 185.54995 * 4 2 1 6 6 C 1.36929 * 120.63317 * 233.58232 * 5 4 2 7 7 H 1.08004 * 119.99871 * 152.16632 * 6 5 4 8 8 C 1.38811 * 120.00218 * 332.17189 * 6 5 4 9 9 N 1.31627 * 119.99745 * 342.76675 * 8 6 5 10 10 Si 1.86791 * 120.00346 * 162.77215 * 8 6 5 11 11 H 1.48500 * 109.47314 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.47037 * 299.99772 * 10 8 6 13 13 H 1.48504 * 109.47385 * 59.99597 * 10 8 6 14 14 C 1.46928 * 118.73296 * 53.30938 * 5 4 2 15 15 C 1.53190 * 108.77991 * 306.64117 * 14 5 4 16 16 C 1.53036 * 109.31189 * 54.63625 * 15 14 5 17 17 H 1.09002 * 109.46238 * 58.65836 * 16 15 14 18 18 N 1.46494 * 109.46255 * 178.63024 * 16 15 14 19 19 C 1.34778 * 120.00121 * 275.00163 * 18 16 15 20 20 O 1.21281 * 119.99773 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00388 * 180.02562 * 19 18 16 22 22 H 1.09009 * 109.42026 * 300.00084 * 21 19 18 23 23 C 1.53030 * 109.42827 * 180.11393 * 21 19 18 24 24 C 1.53414 * 109.70570 * 168.13194 * 23 21 19 25 25 C 1.50873 * 108.15735 * 50.62201 * 24 23 21 26 26 C 1.34578 * 128.32552 * 163.21662 * 25 24 23 27 27 N 1.35201 * 107.61640 * 180.28694 * 26 25 24 28 28 H 0.97003 * 125.99864 * 179.97438 * 27 26 25 29 29 N 1.40313 * 107.99275 * 359.96473 * 27 26 25 30 30 C 1.30122 * 108.12729 * 359.95472 * 29 27 26 31 31 C 1.50945 * 128.28751 * 180.13551 * 30 29 27 32 32 H 1.08997 * 109.47296 * 299.93529 * 1 2 3 33 33 H 1.09003 * 109.46706 * 59.93624 * 1 2 3 34 34 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46856 * 180.02562 * 3 2 1 36 36 H 1.08992 * 109.47171 * 300.06128 * 3 2 1 37 37 H 1.09000 * 109.47189 * 60.06593 * 3 2 1 38 38 H 1.08995 * 109.51113 * 65.66970 * 4 2 1 39 39 H 1.08993 * 109.43433 * 305.38765 * 4 2 1 40 40 H 0.96995 * 120.00176 * 180.02562 * 9 8 6 41 41 H 1.08996 * 109.58884 * 66.43282 * 14 5 4 42 42 H 1.09008 * 109.58321 * 186.71194 * 14 5 4 43 43 H 1.08994 * 109.50037 * 174.58689 * 15 14 5 44 44 H 1.08998 * 109.49513 * 294.65638 * 15 14 5 45 45 H 0.97004 * 120.00190 * 95.00353 * 18 16 15 46 46 H 1.08996 * 109.42672 * 288.26587 * 23 21 19 47 47 H 1.09000 * 109.42727 * 48.10707 * 23 21 19 48 48 H 1.09001 * 109.76491 * 290.94159 * 24 23 21 49 49 H 1.09002 * 109.73933 * 170.29058 * 24 23 21 50 50 H 1.07995 * 126.18668 * 0.32181 * 26 25 24 51 51 H 1.08994 * 109.71761 * 43.68012 * 31 30 29 52 52 H 1.08994 * 109.72049 * 283.02607 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0416 -0.7190 -1.2469 5 7 3.5047 -0.8293 -1.1693 6 6 4.2937 -0.3790 -2.1939 7 1 5.2995 -0.0411 -1.9925 8 6 3.8007 -0.3567 -3.4913 9 7 2.7346 -1.0631 -3.8025 10 14 4.6504 0.6757 -4.7957 11 1 3.9341 0.5280 -6.0881 12 1 4.6389 2.1022 -4.3830 13 1 6.0541 0.2173 -4.9531 14 6 4.1053 -1.4266 0.0312 15 6 3.5709 -0.6946 1.2663 16 6 2.0409 -0.7227 1.2486 17 1 1.6967 -1.7569 1.2358 18 7 1.5265 -0.0520 2.4451 19 6 1.3971 -0.7370 3.5986 20 8 1.7061 -1.9088 3.6458 21 6 0.8675 -0.0473 4.8293 22 1 1.5222 0.7848 5.0886 23 6 0.8242 -1.0420 5.9914 24 6 0.5736 -0.2914 7.3057 25 6 -0.6219 0.6085 7.1127 26 6 -1.3783 1.2045 8.0527 27 7 -2.3412 1.9092 7.4170 28 1 -3.0328 2.4409 7.8412 29 7 -2.1642 1.7366 6.0358 30 6 -1.1359 0.9604 5.8533 31 6 -0.5443 0.4827 4.5494 32 1 -0.3634 0.5128 0.8905 33 1 -0.3633 0.5148 -0.8895 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1306 1.4418 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6784 1.9560 0.8906 38 1 1.7647 -0.1502 -2.1345 39 1 1.6022 -1.7152 -1.2971 40 1 2.3903 -1.0478 -4.7092 41 1 3.8376 -2.4817 0.0875 42 1 5.1898 -1.3267 -0.0145 43 1 3.9334 -1.1890 2.1674 44 1 3.9164 0.3391 1.2543 45 1 1.2790 0.8852 2.4072 46 1 0.0215 -1.7602 5.8241 47 1 1.7756 -1.5703 6.0520 48 1 1.4477 0.3079 7.5604 49 1 0.3716 -1.0051 8.1045 50 1 -1.2407 1.1332 9.1215 51 1 -0.4926 1.3116 3.8435 52 1 -1.1612 -0.3151 4.1361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941233124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:55 Heat of formation + Delta-G solvation = 42.083135 kcal Electronic energy + Delta-G solvation = -31757.179724 eV Core-core repulsion = 27757.876468 eV Total energy + Delta-G solvation = -3999.303256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.76390 -40.10651 -38.34732 -36.17617 -34.55658 -32.92787 -32.41106 -31.96048 -30.91922 -29.33070 -28.66652 -26.73292 -25.92653 -25.59256 -24.61343 -22.83661 -21.73263 -21.29952 -20.56388 -20.03909 -19.12563 -18.10475 -17.87842 -17.13886 -16.43134 -15.71001 -15.55653 -14.99564 -14.86320 -14.57242 -14.12515 -14.04806 -13.89715 -13.74732 -13.52845 -13.30563 -13.22380 -13.08996 -12.87124 -12.60122 -12.30408 -12.07196 -11.63087 -11.60587 -11.47048 -11.36391 -11.26398 -11.10595 -10.99207 -10.84118 -10.67049 -10.55179 -10.50109 -10.18265 -10.07826 -9.93367 -9.72188 -9.67447 -9.58282 -9.31170 -8.71032 -8.60503 -8.41626 -6.64472 -5.77003 -3.18355 1.60792 2.44402 2.52434 2.85319 3.38655 3.42976 3.45516 3.46343 4.15493 4.41471 4.51190 4.66203 4.68233 4.86898 5.03681 5.12855 5.19563 5.27593 5.30256 5.32096 5.36538 5.44765 5.54276 5.61100 5.62063 5.68542 5.76254 5.90719 5.91770 5.99395 6.00680 6.12790 6.14241 6.16565 6.26891 6.35290 6.38508 6.45417 6.52089 6.53198 6.69810 6.75643 6.86331 6.98172 6.98477 7.03824 7.08525 7.35672 7.38929 7.64830 7.78483 7.83455 8.46439 8.47725 9.23322 9.86849 10.43872 11.31717 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002410 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.251618 B =11617.668714 C =12202.058783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.064 0.936 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.291 1.291 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.080 0.920 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.103 4.103 22 H 0.099 0.901 23 C -0.098 4.098 24 C -0.041 4.041 25 C -0.234 4.234 26 C 0.058 3.942 27 N -0.486 5.486 28 H 0.438 0.562 29 N -0.286 5.286 30 C 0.087 3.913 31 C -0.029 4.029 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.029 0.971 38 H 0.092 0.908 39 H 0.018 0.982 40 H 0.254 0.746 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.176 0.824 51 H 0.087 0.913 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.507 6.088 23.587 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.184 4.184 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.217 1.217 12 H -0.211 1.211 13 H -0.209 1.209 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.060 3.940 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.416 6.416 21 C -0.125 4.125 22 H 0.117 0.883 23 C -0.136 4.136 24 C -0.079 4.079 25 C -0.246 4.246 26 C -0.087 4.087 27 N -0.195 5.195 28 H 0.282 0.718 29 N -0.109 5.109 30 C -0.082 4.082 31 C -0.069 4.069 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.089 0.911 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.193 0.807 51 H 0.106 0.894 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.257 5.874 22.866 25.358 hybrid contribution 0.398 0.927 0.010 1.009 sum -8.860 6.801 22.875 25.457 Atomic orbital electron populations 1.21762 0.95379 1.01322 1.00703 1.21480 0.94479 0.96768 0.97174 1.21750 1.02568 0.94747 0.99349 1.20734 0.83112 0.96809 0.93430 1.44024 1.01662 1.69245 1.16191 1.19108 0.97595 1.35406 0.85814 0.91785 1.25010 0.98514 0.99103 0.96917 1.70019 1.25475 1.40312 1.18861 0.86409 0.78967 0.80577 0.81058 1.21708 1.21092 1.20950 1.20874 0.96595 0.94307 0.86214 1.22432 0.94936 1.01503 0.99363 1.20988 0.93737 0.96773 0.82547 0.90142 1.46382 1.65676 1.14419 1.10514 1.20412 0.78058 0.87146 0.84377 1.90698 1.50160 1.16157 1.84622 1.21355 0.96732 0.99894 0.94476 0.88304 1.21380 1.03679 0.96773 0.91751 1.20046 0.93951 0.96150 0.97798 1.20190 1.03891 1.08730 0.91752 1.22074 0.91439 0.96221 0.98998 1.46336 1.26881 1.41763 1.04488 0.71784 1.77039 1.19702 1.21395 0.92728 1.22220 0.93703 0.96004 0.96256 1.20037 0.94074 1.01143 0.91638 0.93758 0.92655 0.93076 0.91139 0.92988 0.95185 0.88945 0.96343 0.93605 0.96292 0.92659 0.92807 0.91903 0.76991 0.91127 0.90126 0.91108 0.90867 0.80738 0.89418 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 8.31 37.16 0.31 -1.76 16 2 C -0.10 -1.70 0.56 -154.61 -0.09 -1.78 16 3 C -0.13 -2.12 7.82 37.16 0.29 -1.83 16 4 C 0.19 4.24 3.95 -3.93 -0.02 4.23 16 5 N -0.59 -14.27 2.44 -172.58 -0.42 -14.69 16 6 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 7 H 0.06 1.69 7.89 -52.48 -0.41 1.27 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.74 11.19 55.49 0.62 -25.12 16 10 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 15 C -0.14 -2.54 5.31 -26.61 -0.14 -2.68 16 16 C 0.16 2.76 1.57 -67.89 -0.11 2.65 16 17 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 18 N -0.72 -9.68 4.19 -53.77 -0.23 -9.91 16 19 C 0.51 7.03 7.10 -10.99 -0.08 6.95 16 20 O -0.54 -9.47 15.43 5.56 0.09 -9.38 16 21 C -0.10 -1.04 2.47 -91.56 -0.23 -1.27 16 22 H 0.10 0.89 8.10 -51.92 -0.42 0.47 16 23 C -0.10 -0.96 4.65 -26.50 -0.12 -1.08 16 24 C -0.04 -0.32 6.28 -27.58 -0.17 -0.49 16 25 C -0.23 -2.09 5.89 -104.98 -0.62 -2.70 16 26 C 0.06 0.40 11.95 -17.36 -0.21 0.20 16 27 N -0.49 -3.76 7.37 30.35 0.22 -3.54 16 28 H 0.44 1.94 8.96 -182.43 -1.64 0.30 16 29 N -0.29 -3.21 12.68 33.75 0.43 -2.79 16 30 C 0.09 0.92 7.10 -82.35 -0.58 0.34 16 31 C -0.03 -0.29 5.43 -27.57 -0.15 -0.44 16 32 H 0.04 0.58 7.36 -51.93 -0.38 0.20 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.32 5.98 -51.93 -0.31 1.01 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 38 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 1.15 7.93 -51.92 -0.41 0.73 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.11 6.34 -51.93 -0.33 0.78 16 45 H 0.40 4.51 6.29 -40.82 -0.26 4.26 16 46 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 47 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.18 0.55 8.06 -52.49 -0.42 0.12 16 51 H 0.09 0.79 7.86 -51.93 -0.41 0.38 16 52 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -32.52 395.91 -10.31 -42.83 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -9.80 Total: 3.61 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.16 Total: -3.39 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.63 Total: -56.03 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.52 -10.31 -42.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941233124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.917 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds