Wall clock time and date at job start Wed Apr 1 2020 04:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.49343 * 2 1 4 4 C 1.52758 * 109.56516 * 240.03209 * 2 1 3 5 5 N 1.46931 * 109.00769 * 185.54995 * 4 2 1 6 6 C 1.36929 * 120.63317 * 233.58232 * 5 4 2 7 7 H 1.08004 * 119.99871 * 152.16632 * 6 5 4 8 8 C 1.38811 * 120.00218 * 332.17189 * 6 5 4 9 9 N 1.31627 * 119.99745 * 342.76675 * 8 6 5 10 10 Si 1.86791 * 120.00346 * 162.77215 * 8 6 5 11 11 H 1.48500 * 109.47314 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.47037 * 299.99772 * 10 8 6 13 13 H 1.48504 * 109.47385 * 59.99597 * 10 8 6 14 14 C 1.46928 * 118.73296 * 53.30938 * 5 4 2 15 15 C 1.53190 * 108.77991 * 306.64117 * 14 5 4 16 16 C 1.53036 * 109.31189 * 54.63625 * 15 14 5 17 17 H 1.09002 * 109.46238 * 58.65836 * 16 15 14 18 18 N 1.46494 * 109.46255 * 178.63024 * 16 15 14 19 19 C 1.34778 * 120.00121 * 275.00163 * 18 16 15 20 20 O 1.21281 * 119.99773 * 359.97438 * 19 18 16 21 21 C 1.50698 * 120.00388 * 180.02562 * 19 18 16 22 22 H 1.09009 * 109.42026 * 300.00084 * 21 19 18 23 23 C 1.53030 * 109.42827 * 180.11393 * 21 19 18 24 24 C 1.53414 * 109.70570 * 168.13194 * 23 21 19 25 25 C 1.50873 * 108.15735 * 50.62201 * 24 23 21 26 26 C 1.34578 * 128.32552 * 163.21662 * 25 24 23 27 27 N 1.35201 * 107.61640 * 180.28694 * 26 25 24 28 28 H 0.97003 * 125.99864 * 179.97438 * 27 26 25 29 29 N 1.40313 * 107.99275 * 359.96473 * 27 26 25 30 30 C 1.30122 * 108.12729 * 359.95472 * 29 27 26 31 31 C 1.50945 * 128.28751 * 180.13551 * 30 29 27 32 32 H 1.08997 * 109.47296 * 299.93529 * 1 2 3 33 33 H 1.09003 * 109.46706 * 59.93624 * 1 2 3 34 34 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46856 * 180.02562 * 3 2 1 36 36 H 1.08992 * 109.47171 * 300.06128 * 3 2 1 37 37 H 1.09000 * 109.47189 * 60.06593 * 3 2 1 38 38 H 1.08995 * 109.51113 * 65.66970 * 4 2 1 39 39 H 1.08993 * 109.43433 * 305.38765 * 4 2 1 40 40 H 0.96995 * 120.00176 * 180.02562 * 9 8 6 41 41 H 1.08996 * 109.58884 * 66.43282 * 14 5 4 42 42 H 1.09008 * 109.58321 * 186.71194 * 14 5 4 43 43 H 1.08994 * 109.50037 * 174.58689 * 15 14 5 44 44 H 1.08998 * 109.49513 * 294.65638 * 15 14 5 45 45 H 0.97004 * 120.00190 * 95.00353 * 18 16 15 46 46 H 1.08996 * 109.42672 * 288.26587 * 23 21 19 47 47 H 1.09000 * 109.42727 * 48.10707 * 23 21 19 48 48 H 1.09001 * 109.76491 * 290.94159 * 24 23 21 49 49 H 1.09002 * 109.73933 * 170.29058 * 24 23 21 50 50 H 1.07995 * 126.18668 * 0.32181 * 26 25 24 51 51 H 1.08994 * 109.71761 * 43.68012 * 31 30 29 52 52 H 1.08994 * 109.72049 * 283.02607 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0416 -0.7190 -1.2469 5 7 3.5047 -0.8293 -1.1693 6 6 4.2937 -0.3790 -2.1939 7 1 5.2995 -0.0411 -1.9925 8 6 3.8007 -0.3567 -3.4913 9 7 2.7346 -1.0631 -3.8025 10 14 4.6504 0.6757 -4.7957 11 1 3.9341 0.5280 -6.0881 12 1 4.6389 2.1022 -4.3830 13 1 6.0541 0.2173 -4.9531 14 6 4.1053 -1.4266 0.0312 15 6 3.5709 -0.6946 1.2663 16 6 2.0409 -0.7227 1.2486 17 1 1.6967 -1.7569 1.2358 18 7 1.5265 -0.0520 2.4451 19 6 1.3971 -0.7370 3.5986 20 8 1.7061 -1.9088 3.6458 21 6 0.8675 -0.0473 4.8293 22 1 1.5222 0.7848 5.0886 23 6 0.8242 -1.0420 5.9914 24 6 0.5736 -0.2914 7.3057 25 6 -0.6219 0.6085 7.1127 26 6 -1.3783 1.2045 8.0527 27 7 -2.3412 1.9092 7.4170 28 1 -3.0328 2.4409 7.8412 29 7 -2.1642 1.7366 6.0358 30 6 -1.1359 0.9604 5.8533 31 6 -0.5443 0.4827 4.5494 32 1 -0.3634 0.5128 0.8905 33 1 -0.3633 0.5148 -0.8895 34 1 -0.3633 -1.0276 -0.0005 35 1 3.1306 1.4418 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6784 1.9560 0.8906 38 1 1.7647 -0.1502 -2.1345 39 1 1.6022 -1.7152 -1.2971 40 1 2.3903 -1.0478 -4.7092 41 1 3.8376 -2.4817 0.0875 42 1 5.1898 -1.3267 -0.0145 43 1 3.9334 -1.1890 2.1674 44 1 3.9164 0.3391 1.2543 45 1 1.2790 0.8852 2.4072 46 1 0.0215 -1.7602 5.8241 47 1 1.7756 -1.5703 6.0520 48 1 1.4477 0.3079 7.5604 49 1 0.3716 -1.0051 8.1045 50 1 -1.2407 1.1332 9.1215 51 1 -0.4926 1.3116 3.8435 52 1 -1.1612 -0.3151 4.1361 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941233124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:54 Heat of formation + Delta-G solvation = 21.936243 kcal Electronic energy + Delta-G solvation = -31758.053359 eV Core-core repulsion = 27757.876468 eV Total energy + Delta-G solvation = -4000.176891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41039 -41.35338 -39.73352 -37.05552 -36.21776 -34.27627 -33.82269 -33.08210 -31.83257 -30.86109 -29.39722 -28.11417 -27.58618 -27.00261 -25.77172 -24.15601 -22.87057 -22.26541 -21.90221 -21.15887 -19.92685 -19.51530 -18.81996 -18.46290 -17.76658 -17.03232 -16.72070 -16.36263 -15.88567 -15.77330 -15.51082 -15.27115 -15.08840 -14.93705 -14.83154 -14.58402 -14.43454 -14.23359 -13.84585 -13.68440 -13.67280 -13.22488 -13.02460 -12.87330 -12.82403 -12.68486 -12.57843 -12.42748 -12.33770 -12.26847 -12.11105 -11.92066 -11.83207 -11.77471 -11.60049 -11.28592 -11.19580 -11.12893 -10.65799 -10.50039 -10.33936 -9.88936 -9.29146 -8.65294 -7.84099 -5.28589 1.02546 1.49101 1.50540 1.57445 1.68677 1.81010 2.05347 2.29379 2.53642 3.30794 3.43751 3.66516 3.72599 3.78959 3.89560 3.99295 4.04144 4.14124 4.16969 4.39286 4.40831 4.44059 4.48897 4.51889 4.63541 4.65370 4.70518 4.72421 4.85069 4.89227 4.90513 5.00455 5.01400 5.03048 5.06788 5.11846 5.14996 5.28936 5.29457 5.31243 5.35793 5.38744 5.43599 5.46789 5.63100 5.65611 5.73505 5.74551 5.78273 6.41911 6.53821 6.68225 6.76974 7.17924 7.36840 7.88175 8.41234 9.22500 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.002410 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.251618 B =11617.668714 C =12202.058783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.194 3.806 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.067 0.933 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.297 1.297 12 H -0.276 1.276 13 H -0.278 1.278 14 C 0.143 3.857 15 C -0.127 4.127 16 C 0.176 3.824 17 H 0.052 0.948 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.580 6.580 21 C -0.088 4.088 22 H 0.120 0.880 23 C -0.097 4.097 24 C -0.031 4.031 25 C -0.258 4.258 26 C 0.075 3.925 27 N -0.480 5.480 28 H 0.451 0.549 29 N -0.326 5.326 30 C 0.071 3.929 31 C -0.027 4.027 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.062 0.938 39 H -0.016 1.016 40 H 0.249 0.751 41 H 0.003 0.997 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.410 0.590 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.216 0.784 51 H 0.098 0.902 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.667 8.488 26.601 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.177 4.177 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.244 4.244 9 N -0.581 5.581 10 Si 0.792 3.208 11 H -0.223 1.223 12 H -0.202 1.202 13 H -0.204 1.204 14 C 0.017 3.983 15 C -0.167 4.167 16 C 0.071 3.929 17 H 0.070 0.930 18 N -0.359 5.359 19 C 0.304 3.696 20 O -0.459 6.459 21 C -0.110 4.110 22 H 0.138 0.862 23 C -0.135 4.135 24 C -0.069 4.069 25 C -0.269 4.269 26 C -0.071 4.071 27 N -0.190 5.190 28 H 0.298 0.702 29 N -0.149 5.149 30 C -0.096 4.096 31 C -0.066 4.066 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.002 0.998 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.248 0.752 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.233 0.767 51 H 0.117 0.883 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.429 8.315 25.915 28.803 hybrid contribution 0.432 0.096 -0.857 0.965 sum -8.997 8.411 25.058 27.921 Atomic orbital electron populations 1.21724 0.93492 1.01221 1.02237 1.21245 0.95903 0.96945 0.94774 1.21670 1.01297 0.93805 1.00948 1.20520 0.82588 0.95069 0.95018 1.44245 1.02107 1.69597 1.16583 1.19424 0.97934 1.34678 0.86570 0.91573 1.25737 0.99435 1.00349 0.98855 1.70188 1.27110 1.41970 1.18863 0.85399 0.77904 0.79292 0.78205 1.22314 1.20169 1.20411 1.20970 0.96818 0.93772 0.86725 1.22233 0.95447 1.01495 0.97527 1.20553 0.93120 0.95547 0.83708 0.93010 1.46129 1.65399 1.14954 1.09389 1.21045 0.76928 0.86617 0.85013 1.90692 1.51828 1.18158 1.85250 1.21287 0.97186 1.00114 0.92395 0.86171 1.21358 1.02497 0.96643 0.93029 1.19992 0.94124 0.96161 0.96639 1.20420 1.04981 1.09923 0.91595 1.22692 0.89747 0.94120 1.00551 1.46401 1.27318 1.41645 1.03596 0.70245 1.76954 1.20558 1.22626 0.94812 1.22311 0.94042 0.96358 0.96924 1.19977 0.93407 1.01095 0.92114 0.90486 0.92775 0.94097 0.92999 0.93943 0.91009 0.91936 0.99842 0.94195 0.97946 0.92429 0.92190 0.90802 0.75235 0.92749 0.91159 0.89808 0.89416 0.76707 0.88344 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 8.31 71.98 0.60 -3.30 16 2 C -0.09 -3.03 0.56 -52.25 -0.03 -3.06 16 3 C -0.12 -3.80 7.82 71.98 0.56 -3.24 16 4 C 0.19 9.27 3.95 86.22 0.34 9.61 16 5 N -0.60 -30.08 2.44 -699.93 -1.71 -31.79 16 6 C -0.26 -13.91 9.58 84.03 0.81 -13.10 16 7 H 0.07 3.51 7.89 -2.91 -0.02 3.48 16 8 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 9 N -0.94 -55.36 11.19 21.65 0.24 -55.11 16 10 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 11 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 C 0.14 6.21 6.52 86.36 0.56 6.78 16 15 C -0.13 -4.47 5.31 30.67 0.16 -4.31 16 16 C 0.18 5.89 1.57 45.02 0.07 5.96 16 17 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 18 N -0.71 -17.72 4.19 -442.42 -1.85 -19.57 16 19 C 0.52 13.44 7.10 87.66 0.62 14.06 16 20 O -0.58 -20.31 15.43 -3.03 -0.05 -20.35 16 21 C -0.09 -1.61 2.47 -11.40 -0.03 -1.63 16 22 H 0.12 1.74 8.10 -2.38 -0.02 1.72 16 23 C -0.10 -1.76 4.65 30.74 0.14 -1.62 16 24 C -0.03 -0.39 6.28 30.04 0.19 -0.20 16 25 C -0.26 -3.84 5.89 -20.10 -0.12 -3.96 16 26 C 0.08 0.76 11.95 83.34 1.00 1.76 16 27 N -0.48 -6.09 7.37 -57.88 -0.43 -6.52 16 28 H 0.45 2.77 8.96 -213.18 -1.91 0.86 16 29 N -0.33 -6.70 12.68 -47.14 -0.60 -7.30 16 30 C 0.07 1.37 7.10 43.44 0.31 1.68 16 31 C -0.03 -0.47 5.43 30.05 0.16 -0.31 16 32 H 0.08 1.82 7.36 -2.39 -0.02 1.80 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.86 5.98 -2.39 -0.01 1.84 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.07 1.66 6.58 -2.39 -0.02 1.65 16 38 H 0.06 3.36 6.04 -2.39 -0.01 3.34 16 39 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 41 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.06 2.42 7.93 -2.38 -0.02 2.40 16 43 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 2.47 6.34 -2.39 -0.02 2.46 16 45 H 0.41 7.96 6.29 -92.71 -0.58 7.38 16 46 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 47 H 0.07 1.42 7.68 -2.39 -0.02 1.40 16 48 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.22 0.24 8.06 -2.91 -0.02 0.22 16 51 H 0.10 1.50 7.86 -2.39 -0.02 1.48 16 52 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 Total: -1.00 -74.05 395.91 1.85 -72.20 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -1.56 Total: 18.91 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.77 Total: 2.84 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -4.35 Total: -120.29 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -74.05 1.85 -72.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941233124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.137 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds