Wall clock time and date at job start Wed Apr 1 2020 04:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.49660 * 2 1 4 4 C 1.53190 * 109.50218 * 239.93440 * 2 1 3 5 5 N 1.46931 * 108.77386 * 185.44279 * 4 2 1 6 6 C 1.36939 * 120.60556 * 233.57493 * 5 4 2 7 7 H 1.08001 * 120.00092 * 151.80388 * 6 5 4 8 8 C 1.38808 * 119.99764 * 331.80508 * 6 5 4 9 9 N 1.31621 * 120.00477 * 343.08014 * 8 6 5 10 10 Si 1.86803 * 119.99773 * 163.08097 * 8 6 5 11 11 H 1.48500 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47485 * 119.99951 * 10 8 6 13 13 H 1.48506 * 109.47225 * 240.00092 * 10 8 6 14 14 C 1.46926 * 118.76454 * 53.55720 * 5 4 2 15 15 C 1.53190 * 108.77515 * 306.40980 * 14 5 4 16 16 C 1.53046 * 109.49821 * 120.05973 * 2 1 3 17 17 H 1.09002 * 109.45569 * 61.30210 * 16 2 1 18 18 N 1.46496 * 109.46182 * 301.32668 * 16 2 1 19 19 C 1.34779 * 120.00076 * 154.99756 * 18 16 2 20 20 O 1.21280 * 119.99506 * 0.02562 * 19 18 16 21 21 C 1.50693 * 119.99870 * 179.97438 * 19 18 16 22 22 H 1.09005 * 109.42487 * 60.11890 * 21 19 18 23 23 C 1.53028 * 109.42433 * 180.02562 * 21 19 18 24 24 C 1.53388 * 109.72240 * 191.81835 * 23 21 19 25 25 C 1.50886 * 108.19323 * 309.46601 * 24 23 21 26 26 C 1.34566 * 128.32663 * 196.57665 * 25 24 23 27 27 N 1.35196 * 107.61671 * 179.85966 * 26 25 24 28 28 H 0.97003 * 126.00306 * 179.97438 * 27 26 25 29 29 N 1.40310 * 107.99397 * 0.02915 * 27 26 25 30 30 C 1.30130 * 108.12466 * 0.04555 * 29 27 26 31 31 C 1.50941 * 128.28546 * 179.70857 * 30 29 27 32 32 H 1.09001 * 109.47290 * 60.00473 * 1 2 3 33 33 H 1.08993 * 109.47456 * 299.99884 * 1 2 3 34 34 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47028 * 59.99559 * 3 2 1 36 36 H 1.08995 * 109.47136 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.46760 * 299.99732 * 3 2 1 38 38 H 1.09006 * 109.58451 * 305.19889 * 4 2 1 39 39 H 1.09002 * 109.58717 * 65.62080 * 4 2 1 40 40 H 0.96997 * 119.99783 * 180.02562 * 9 8 6 41 41 H 1.08998 * 109.58915 * 186.62260 * 14 5 4 42 42 H 1.09001 * 109.70356 * 66.26419 * 14 5 4 43 43 H 1.09002 * 109.50088 * 294.68807 * 15 14 5 44 44 H 1.08999 * 109.52526 * 174.59910 * 15 14 5 45 45 H 0.97000 * 120.00188 * 335.00239 * 18 16 2 46 46 H 1.09005 * 109.42952 * 311.88986 * 23 21 19 47 47 H 1.09000 * 109.42864 * 71.73644 * 23 21 19 48 48 H 1.08993 * 109.72017 * 69.14226 * 24 23 21 49 49 H 1.09004 * 109.71526 * 189.79130 * 24 23 21 50 50 H 1.08004 * 126.19336 * 359.82968 * 26 25 24 51 51 H 1.08995 * 109.71972 * 77.14649 * 31 30 29 52 52 H 1.09002 * 109.72048 * 316.50053 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8293 -1.1693 6 6 4.2936 -0.3794 -2.1941 7 1 5.2961 -0.0323 -1.9916 8 6 3.8049 -0.3694 -3.4933 9 7 2.7418 -1.0813 -3.8021 10 14 4.6561 0.6545 -4.8035 11 1 5.8188 1.3577 -4.2043 12 1 5.1241 -0.2326 -5.8985 13 1 3.7018 1.6530 -5.3490 14 6 4.1054 -1.4265 0.0313 15 6 3.5709 -0.6945 1.2662 16 6 2.0408 -0.7226 1.2487 17 1 1.6968 -1.7569 1.2359 18 7 1.5268 -0.0520 2.4453 19 6 1.3987 -0.7368 3.5991 20 8 1.7095 -1.9081 3.6466 21 6 0.8705 -0.0467 4.8302 22 1 -0.1347 0.3262 4.6336 23 6 0.8264 -1.0417 5.9920 24 6 0.0249 -0.4441 7.1553 25 6 0.5635 0.9368 7.4380 26 6 0.3830 1.6943 8.5355 27 7 1.0536 2.8531 8.3476 28 1 1.1021 3.5919 8.9743 29 7 1.6659 2.7999 7.0863 30 6 1.3721 1.6552 6.5416 31 6 1.7877 1.1289 5.1893 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.6775 1.9563 0.8899 36 1 3.1306 1.4418 -0.0005 37 1 1.6775 1.9562 -0.8901 38 1 1.6054 -1.7213 -1.2984 39 1 1.7638 -0.1574 -2.1389 40 1 2.4006 -1.0746 -4.7100 41 1 5.1897 -1.3244 -0.0133 42 1 3.8398 -2.4821 0.0888 43 1 3.9159 0.3395 1.2540 44 1 3.9334 -1.1884 2.1678 45 1 1.2785 0.8849 2.4074 46 1 0.3509 -1.9650 5.6608 47 1 1.8421 -1.2567 6.3240 48 1 -1.0280 -0.3792 6.8814 49 1 0.1375 -1.0710 8.0398 50 1 -0.1935 1.4254 9.4083 51 1 2.8225 0.7890 5.2291 52 1 1.6869 1.9156 4.4416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941233125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:59 Heat of formation + Delta-G solvation = 41.815096 kcal Electronic energy + Delta-G solvation = -31755.240062 eV Core-core repulsion = 27755.925183 eV Total energy + Delta-G solvation = -3999.314879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.76259 -40.10110 -38.33483 -36.17405 -34.55644 -32.93606 -32.38825 -31.96273 -30.91665 -29.32930 -28.67627 -26.73151 -25.93697 -25.57850 -24.60780 -22.83634 -21.74139 -21.28953 -20.56223 -20.04493 -19.09836 -18.13612 -17.87713 -17.12305 -16.42557 -15.69765 -15.57655 -14.97943 -14.85048 -14.65796 -14.09184 -13.94537 -13.91701 -13.73025 -13.59658 -13.37910 -13.16165 -13.02412 -12.93470 -12.59692 -12.29780 -12.07125 -11.63221 -11.60965 -11.46944 -11.37260 -11.26540 -11.10075 -11.00217 -10.85827 -10.64773 -10.56088 -10.50046 -10.17528 -10.06176 -9.93493 -9.71538 -9.66933 -9.58671 -9.30739 -8.70925 -8.60531 -8.42629 -6.64058 -5.77437 -3.19256 1.61043 2.44611 2.52659 2.85351 3.37130 3.43029 3.46225 3.48015 4.15593 4.41725 4.50894 4.66010 4.68598 4.87022 5.03665 5.12933 5.19952 5.27957 5.31207 5.31450 5.36752 5.44434 5.54331 5.60017 5.62377 5.68828 5.76707 5.90820 5.91961 5.99043 6.00758 6.11921 6.14145 6.16358 6.26921 6.34916 6.38541 6.44767 6.51972 6.53636 6.69313 6.75271 6.86577 6.98185 6.98718 7.03552 7.08753 7.35244 7.39218 7.64329 7.78875 7.83694 8.46412 8.47721 9.23164 9.86482 10.43611 11.31197 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.002421 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.668808 B =11563.906332 C =11937.350227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.248 4.248 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.080 0.920 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.102 4.102 22 H 0.099 0.901 23 C -0.098 4.098 24 C -0.041 4.041 25 C -0.234 4.234 26 C 0.058 3.942 27 N -0.486 5.486 28 H 0.438 0.562 29 N -0.286 5.286 30 C 0.087 3.913 31 C -0.029 4.029 32 H 0.054 0.946 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.029 0.971 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.019 0.981 39 H 0.092 0.908 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.395 0.605 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.176 0.824 51 H 0.091 0.909 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 6.173 23.652 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.184 4.184 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.378 4.378 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.729 3.271 11 H -0.203 1.203 12 H -0.218 1.218 13 H -0.216 1.216 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.060 3.940 17 H 0.098 0.902 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.416 6.416 21 C -0.124 4.124 22 H 0.117 0.883 23 C -0.136 4.136 24 C -0.079 4.079 25 C -0.246 4.246 26 C -0.087 4.087 27 N -0.195 5.195 28 H 0.282 0.718 29 N -0.109 5.109 30 C -0.082 4.082 31 C -0.069 4.069 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.230 0.770 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.193 0.807 51 H 0.109 0.891 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.591 6.394 23.363 25.384 hybrid contribution -0.230 0.737 -0.176 0.792 sum -7.821 7.131 23.188 25.489 Atomic orbital electron populations 1.21759 0.95462 1.01289 1.00644 1.21557 0.94411 0.96779 0.97190 1.21745 1.02606 0.94718 0.99346 1.20823 0.83108 0.96745 0.93358 1.44051 1.01650 1.69239 1.16200 1.19194 0.97918 1.34959 0.85680 0.91702 1.25026 0.98526 0.99062 0.96969 1.70033 1.25714 1.40303 1.18628 0.86275 0.78943 0.79985 0.81902 1.20291 1.21800 1.21631 1.20870 0.96602 0.94280 0.86230 1.22437 0.94906 1.01537 0.99357 1.20989 0.93765 0.96747 0.82532 0.90168 1.46384 1.65695 1.14411 1.10510 1.20412 0.78081 0.87150 0.84351 1.90698 1.49820 1.16304 1.84813 1.21347 1.00675 0.96254 0.94166 0.88336 1.21377 1.01624 0.97678 0.92912 1.20041 0.98838 0.90617 0.98439 1.20185 1.08616 1.00155 0.95612 1.22070 0.98755 0.87638 1.00268 1.46336 1.41519 1.16030 1.15580 0.71784 1.77045 1.19910 1.20515 0.93396 1.22221 0.97097 0.91715 0.97142 1.20034 0.99932 0.96350 0.90576 0.92669 0.93828 0.93090 0.95161 0.91096 0.93009 0.96294 0.88973 0.93718 0.92673 0.96303 0.91865 0.92799 0.76995 0.90126 0.91124 0.91120 0.90866 0.80739 0.89082 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.31 37.16 0.31 -1.74 16 2 C -0.10 -1.70 0.56 -154.39 -0.09 -1.79 16 3 C -0.13 -2.11 7.83 37.16 0.29 -1.82 16 4 C 0.19 4.25 3.98 -3.71 -0.01 4.23 16 5 N -0.59 -14.26 2.43 -172.32 -0.42 -14.68 16 6 C -0.25 -6.61 9.58 -15.06 -0.14 -6.76 16 7 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 8 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 9 N -0.90 -25.71 11.20 55.49 0.62 -25.09 16 10 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 15 C -0.14 -2.54 5.31 -26.61 -0.14 -2.68 16 16 C 0.16 2.75 1.57 -67.88 -0.11 2.65 16 17 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 18 N -0.72 -9.67 4.19 -53.76 -0.23 -9.90 16 19 C 0.51 7.02 7.10 -10.99 -0.08 6.95 16 20 O -0.54 -9.46 15.43 5.56 0.09 -9.38 16 21 C -0.10 -1.04 2.46 -91.57 -0.23 -1.26 16 22 H 0.10 0.88 8.10 -51.93 -0.42 0.45 16 23 C -0.10 -0.96 4.65 -26.52 -0.12 -1.08 16 24 C -0.04 -0.31 6.28 -27.59 -0.17 -0.49 16 25 C -0.23 -2.09 5.89 -104.98 -0.62 -2.71 16 26 C 0.06 0.40 11.95 -17.37 -0.21 0.20 16 27 N -0.49 -3.78 7.37 30.35 0.22 -3.56 16 28 H 0.44 1.95 8.96 -182.44 -1.64 0.32 16 29 N -0.29 -3.24 12.68 33.75 0.43 -2.81 16 30 C 0.09 0.93 7.10 -82.35 -0.58 0.34 16 31 C -0.03 -0.29 5.42 -27.57 -0.15 -0.44 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.04 0.57 7.36 -51.93 -0.38 0.18 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 36 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 40 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.12 6.34 -51.93 -0.33 0.79 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.40 4.50 6.28 -40.82 -0.26 4.25 16 46 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 47 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.18 0.55 8.06 -52.48 -0.42 0.13 16 51 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 52 H 0.09 0.80 7.85 -51.93 -0.41 0.39 16 LS Contribution 395.95 15.07 5.97 5.97 Total: -1.00 -32.55 395.95 -10.31 -42.86 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -9.80 Total: 3.52 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.16 Total: -3.33 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.63 Total: -56.03 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.55 -10.31 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941233125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.673 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds