Wall clock time and date at job start Wed Apr 1 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.49660 * 2 1 4 4 C 1.53190 * 109.50218 * 239.93440 * 2 1 3 5 5 N 1.46931 * 108.77386 * 185.44279 * 4 2 1 6 6 C 1.36939 * 120.60556 * 233.57493 * 5 4 2 7 7 H 1.08001 * 120.00092 * 151.80388 * 6 5 4 8 8 C 1.38808 * 119.99764 * 331.80508 * 6 5 4 9 9 N 1.31621 * 120.00477 * 343.08014 * 8 6 5 10 10 Si 1.86803 * 119.99773 * 163.08097 * 8 6 5 11 11 H 1.48500 * 109.47046 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47485 * 119.99951 * 10 8 6 13 13 H 1.48506 * 109.47225 * 240.00092 * 10 8 6 14 14 C 1.46926 * 118.76454 * 53.55720 * 5 4 2 15 15 C 1.53190 * 108.77515 * 306.40980 * 14 5 4 16 16 C 1.53046 * 109.49821 * 120.05973 * 2 1 3 17 17 H 1.09002 * 109.45569 * 61.30210 * 16 2 1 18 18 N 1.46496 * 109.46182 * 301.32668 * 16 2 1 19 19 C 1.34779 * 120.00076 * 154.99756 * 18 16 2 20 20 O 1.21280 * 119.99506 * 0.02562 * 19 18 16 21 21 C 1.50693 * 119.99870 * 179.97438 * 19 18 16 22 22 H 1.09005 * 109.42487 * 60.11890 * 21 19 18 23 23 C 1.53028 * 109.42433 * 180.02562 * 21 19 18 24 24 C 1.53388 * 109.72240 * 191.81835 * 23 21 19 25 25 C 1.50886 * 108.19323 * 309.46601 * 24 23 21 26 26 C 1.34566 * 128.32663 * 196.57665 * 25 24 23 27 27 N 1.35196 * 107.61671 * 179.85966 * 26 25 24 28 28 H 0.97003 * 126.00306 * 179.97438 * 27 26 25 29 29 N 1.40310 * 107.99397 * 0.02915 * 27 26 25 30 30 C 1.30130 * 108.12466 * 0.04555 * 29 27 26 31 31 C 1.50941 * 128.28546 * 179.70857 * 30 29 27 32 32 H 1.09001 * 109.47290 * 60.00473 * 1 2 3 33 33 H 1.08993 * 109.47456 * 299.99884 * 1 2 3 34 34 H 1.09005 * 109.46995 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47028 * 59.99559 * 3 2 1 36 36 H 1.08995 * 109.47136 * 180.02562 * 3 2 1 37 37 H 1.09005 * 109.46760 * 299.99732 * 3 2 1 38 38 H 1.09006 * 109.58451 * 305.19889 * 4 2 1 39 39 H 1.09002 * 109.58717 * 65.62080 * 4 2 1 40 40 H 0.96997 * 119.99783 * 180.02562 * 9 8 6 41 41 H 1.08998 * 109.58915 * 186.62260 * 14 5 4 42 42 H 1.09001 * 109.70356 * 66.26419 * 14 5 4 43 43 H 1.09002 * 109.50088 * 294.68807 * 15 14 5 44 44 H 1.08999 * 109.52526 * 174.59910 * 15 14 5 45 45 H 0.97000 * 120.00188 * 335.00239 * 18 16 2 46 46 H 1.09005 * 109.42952 * 311.88986 * 23 21 19 47 47 H 1.09000 * 109.42864 * 71.73644 * 23 21 19 48 48 H 1.08993 * 109.72017 * 69.14226 * 24 23 21 49 49 H 1.09004 * 109.71526 * 189.79130 * 24 23 21 50 50 H 1.08004 * 126.19336 * 359.82968 * 26 25 24 51 51 H 1.08995 * 109.71972 * 77.14649 * 31 30 29 52 52 H 1.09002 * 109.72048 * 316.50053 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7234 -1.2497 5 7 3.5047 -0.8293 -1.1693 6 6 4.2936 -0.3794 -2.1941 7 1 5.2961 -0.0323 -1.9916 8 6 3.8049 -0.3694 -3.4933 9 7 2.7418 -1.0813 -3.8021 10 14 4.6561 0.6545 -4.8035 11 1 5.8188 1.3577 -4.2043 12 1 5.1241 -0.2326 -5.8985 13 1 3.7018 1.6530 -5.3490 14 6 4.1054 -1.4265 0.0313 15 6 3.5709 -0.6945 1.2662 16 6 2.0408 -0.7226 1.2487 17 1 1.6968 -1.7569 1.2359 18 7 1.5268 -0.0520 2.4453 19 6 1.3987 -0.7368 3.5991 20 8 1.7095 -1.9081 3.6466 21 6 0.8705 -0.0467 4.8302 22 1 -0.1347 0.3262 4.6336 23 6 0.8264 -1.0417 5.9920 24 6 0.0249 -0.4441 7.1553 25 6 0.5635 0.9368 7.4380 26 6 0.3830 1.6943 8.5355 27 7 1.0536 2.8531 8.3476 28 1 1.1021 3.5919 8.9743 29 7 1.6659 2.7999 7.0863 30 6 1.3721 1.6552 6.5416 31 6 1.7877 1.1289 5.1893 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.6775 1.9563 0.8899 36 1 3.1306 1.4418 -0.0005 37 1 1.6775 1.9562 -0.8901 38 1 1.6054 -1.7213 -1.2984 39 1 1.7638 -0.1574 -2.1389 40 1 2.4006 -1.0746 -4.7100 41 1 5.1897 -1.3244 -0.0133 42 1 3.8398 -2.4821 0.0888 43 1 3.9159 0.3395 1.2540 44 1 3.9334 -1.1884 2.1678 45 1 1.2785 0.8849 2.4074 46 1 0.3509 -1.9650 5.6608 47 1 1.8421 -1.2567 6.3240 48 1 -1.0280 -0.3792 6.8814 49 1 0.1375 -1.0710 8.0398 50 1 -0.1935 1.4254 9.4083 51 1 2.8225 0.7890 5.2291 52 1 1.6869 1.9156 4.4416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941233125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:58 Heat of formation + Delta-G solvation = 21.651960 kcal Electronic energy + Delta-G solvation = -31756.114401 eV Core-core repulsion = 27755.925183 eV Total energy + Delta-G solvation = -4000.189218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.41135 -41.34531 -39.72175 -37.05592 -36.21848 -34.27259 -33.81778 -33.07865 -31.83035 -30.86974 -29.40326 -28.10607 -27.57911 -27.00969 -25.75528 -24.16462 -22.87334 -22.26341 -21.90073 -21.15933 -19.89141 -19.55397 -18.82228 -18.46373 -17.75066 -17.02626 -16.72038 -16.40509 -15.84305 -15.79459 -15.52554 -15.29469 -14.99618 -14.98449 -14.70753 -14.69648 -14.46562 -14.22573 -13.85504 -13.69324 -13.63771 -13.23296 -13.03107 -12.87756 -12.83038 -12.69564 -12.61216 -12.37788 -12.32452 -12.29408 -12.11098 -11.87734 -11.83034 -11.79120 -11.59307 -11.27895 -11.19125 -11.13083 -10.65877 -10.52113 -10.33934 -9.88903 -9.29215 -8.65009 -7.84662 -5.29655 1.02537 1.46920 1.49502 1.59438 1.68468 1.81010 2.05707 2.29448 2.52906 3.30412 3.43645 3.66346 3.73400 3.78935 3.88617 4.00494 4.03519 4.14543 4.17139 4.39153 4.40712 4.44140 4.48585 4.52182 4.63074 4.65454 4.70451 4.72302 4.85557 4.89640 4.90494 5.00582 5.01807 5.02811 5.06630 5.12010 5.15003 5.28931 5.29482 5.31206 5.35485 5.38947 5.43710 5.47248 5.63315 5.65474 5.73576 5.74579 5.78452 6.41969 6.53862 6.68318 6.76968 7.17770 7.36928 7.87571 8.40716 9.22007 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.002421 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.668808 B =11563.906332 C =11937.350227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 C -0.120 4.120 4 C 0.194 3.806 5 N -0.603 5.603 6 C -0.254 4.254 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.289 1.289 14 C 0.144 3.856 15 C -0.128 4.128 16 C 0.176 3.824 17 H 0.053 0.947 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.580 6.580 21 C -0.088 4.088 22 H 0.121 0.879 23 C -0.097 4.097 24 C -0.031 4.031 25 C -0.258 4.258 26 C 0.075 3.925 27 N -0.480 5.480 28 H 0.451 0.549 29 N -0.327 5.327 30 C 0.071 3.929 31 C -0.026 4.026 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.042 0.958 38 H -0.015 1.015 39 H 0.062 0.938 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.003 0.997 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.410 0.590 46 H 0.070 0.930 47 H 0.054 0.946 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.217 0.783 51 H 0.079 0.921 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.548 8.299 26.407 29.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.178 4.178 4 C 0.068 3.932 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.791 3.209 11 H -0.191 1.191 12 H -0.223 1.223 13 H -0.215 1.215 14 C 0.018 3.982 15 C -0.168 4.168 16 C 0.071 3.929 17 H 0.071 0.929 18 N -0.359 5.359 19 C 0.304 3.696 20 O -0.459 6.459 21 C -0.110 4.110 22 H 0.139 0.861 23 C -0.135 4.135 24 C -0.069 4.069 25 C -0.269 4.269 26 C -0.071 4.071 27 N -0.189 5.189 28 H 0.298 0.702 29 N -0.150 5.150 30 C -0.096 4.096 31 C -0.066 4.066 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.003 0.997 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.021 0.979 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.248 0.752 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.233 0.767 51 H 0.097 0.903 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.757 8.565 26.156 28.883 hybrid contribution 0.165 0.006 -0.950 0.965 sum -8.592 8.572 25.206 27.976 Atomic orbital electron populations 1.21720 0.93385 1.01290 1.02248 1.21323 0.95990 0.96864 0.94699 1.21669 1.01269 0.93853 1.00961 1.20620 0.82515 0.95088 0.94972 1.44267 1.02139 1.69580 1.16535 1.19478 0.98187 1.34281 0.86469 0.91695 1.25737 0.99448 1.00279 0.98873 1.70191 1.27282 1.41898 1.18722 0.85278 0.78172 0.78299 0.79129 1.19148 1.22317 1.21549 1.20953 0.96748 0.93773 0.86760 1.22240 0.95615 1.01436 0.97464 1.20552 0.92996 0.95607 0.83737 0.92900 1.46129 1.65413 1.14940 1.09391 1.21045 0.76944 0.86628 0.84988 1.90691 1.51469 1.18340 1.85426 1.21279 1.01469 0.96063 0.92150 0.86140 1.21354 1.01099 0.97374 0.93705 1.19989 0.98917 0.90114 0.97889 1.20415 1.09404 1.00884 0.96194 1.22691 0.97337 0.86409 1.00660 1.46399 1.40834 1.16883 1.14833 0.70246 1.76960 1.21561 1.21307 0.95181 1.22310 0.97764 0.92065 0.97492 1.19967 0.99096 0.96284 0.91208 0.92758 0.90447 0.93987 0.91016 0.93088 0.93885 0.99672 0.91945 0.94173 0.92596 0.97893 0.90894 0.92381 0.75236 0.91166 0.92740 0.89794 0.89414 0.76691 0.90276 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.80 8.31 71.98 0.60 -3.20 16 2 C -0.09 -3.01 0.56 -52.10 -0.03 -3.04 16 3 C -0.12 -3.81 7.83 71.98 0.56 -3.24 16 4 C 0.19 9.23 3.98 86.36 0.34 9.57 16 5 N -0.60 -30.11 2.43 -699.08 -1.70 -31.81 16 6 C -0.25 -13.84 9.58 84.03 0.81 -13.03 16 7 H 0.07 3.48 7.88 -2.91 -0.02 3.45 16 8 C -0.05 -2.67 4.92 84.86 0.42 -2.25 16 9 N -0.93 -55.18 11.20 21.65 0.24 -54.94 16 10 Si 0.96 44.76 29.59 68.60 2.03 46.79 16 11 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 13 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 14 C 0.14 6.28 6.52 86.36 0.56 6.84 16 15 C -0.13 -4.55 5.31 30.67 0.16 -4.39 16 16 C 0.18 5.89 1.57 45.02 0.07 5.96 16 17 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 18 N -0.71 -17.69 4.19 -442.40 -1.85 -19.54 16 19 C 0.52 13.43 7.10 87.65 0.62 14.05 16 20 O -0.58 -20.30 15.43 -3.03 -0.05 -20.35 16 21 C -0.09 -1.60 2.46 -11.41 -0.03 -1.63 16 22 H 0.12 1.73 8.10 -2.38 -0.02 1.71 16 23 C -0.10 -1.76 4.65 30.73 0.14 -1.61 16 24 C -0.03 -0.38 6.28 30.04 0.19 -0.19 16 25 C -0.26 -3.84 5.89 -20.10 -0.12 -3.96 16 26 C 0.08 0.76 11.95 83.33 1.00 1.76 16 27 N -0.48 -6.12 7.37 -57.89 -0.43 -6.54 16 28 H 0.45 2.80 8.96 -213.18 -1.91 0.89 16 29 N -0.33 -6.76 12.68 -47.14 -0.60 -7.36 16 30 C 0.07 1.37 7.10 43.44 0.31 1.68 16 31 C -0.03 -0.47 5.42 30.05 0.16 -0.31 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 1.76 7.36 -2.39 -0.02 1.74 16 34 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.07 1.66 6.58 -2.39 -0.02 1.64 16 36 H 0.05 1.83 5.97 -2.39 -0.01 1.82 16 37 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 38 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 39 H 0.06 3.34 6.06 -2.39 -0.01 3.32 16 40 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 41 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.07 2.49 6.34 -2.39 -0.02 2.47 16 44 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.41 7.94 6.28 -92.71 -0.58 7.36 16 46 H 0.07 1.42 7.68 -2.38 -0.02 1.40 16 47 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.22 0.23 8.06 -2.91 -0.02 0.21 16 51 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 52 H 0.10 1.52 7.85 -2.39 -0.02 1.51 16 Total: -1.00 -74.08 395.95 1.86 -72.22 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -1.55 Total: 18.52 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.77 Total: 3.01 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -4.34 Total: -120.19 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -74.08 1.86 -72.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941233125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.868 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds