Wall clock time and date at job start Wed Apr 1 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.49442 * 2 1 4 4 C 1.53193 * 109.50156 * 239.90495 * 2 1 3 5 5 N 1.46921 * 108.77477 * 294.68032 * 4 2 1 6 6 C 1.36932 * 120.63449 * 126.38743 * 5 4 2 7 7 H 1.08001 * 120.00567 * 207.68938 * 6 5 4 8 8 C 1.38816 * 119.99918 * 27.68482 * 6 5 4 9 9 N 1.31623 * 119.99748 * 17.35457 * 8 6 5 10 10 Si 1.86801 * 120.00255 * 197.36032 * 8 6 5 11 11 H 1.48499 * 109.47108 * 59.99538 * 10 8 6 12 12 H 1.48501 * 109.47078 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.46872 * 299.99914 * 10 8 6 14 14 C 1.46938 * 118.76297 * 306.41304 * 5 4 2 15 15 C 1.53189 * 108.77456 * 53.55243 * 14 5 4 16 16 C 1.53037 * 109.33791 * 305.41669 * 15 14 5 17 17 H 1.08994 * 109.45815 * 301.32280 * 16 15 14 18 18 N 1.46506 * 109.45643 * 181.36782 * 16 15 14 19 19 C 1.34772 * 119.99788 * 85.00079 * 18 16 15 20 20 O 1.21279 * 120.00447 * 359.97438 * 19 18 16 21 21 C 1.50704 * 119.99895 * 179.97438 * 19 18 16 22 22 H 1.09000 * 109.42088 * 60.11294 * 21 19 18 23 23 C 1.53019 * 109.42581 * 179.97438 * 21 19 18 24 24 C 1.53388 * 109.73039 * 191.79413 * 23 21 19 25 25 C 1.50883 * 108.19812 * 309.46472 * 24 23 21 26 26 C 1.34564 * 128.33344 * 196.61354 * 25 24 23 27 27 N 1.35196 * 107.62192 * 179.89891 * 26 25 24 28 28 H 0.97002 * 126.00471 * 179.97438 * 27 26 25 29 29 N 1.40316 * 107.99250 * 0.02744 * 27 26 25 30 30 C 1.30127 * 108.12067 * 0.03731 * 29 27 26 31 31 C 1.50947 * 128.28377 * 179.80562 * 30 29 27 32 32 H 1.09001 * 109.47391 * 299.93180 * 1 2 3 33 33 H 1.08996 * 109.47493 * 59.93961 * 1 2 3 34 34 H 1.09007 * 109.46324 * 179.97438 * 1 2 3 35 35 H 1.08995 * 109.46810 * 180.02562 * 3 2 1 36 36 H 1.08994 * 109.46738 * 300.06305 * 3 2 1 37 37 H 1.08998 * 109.47197 * 60.06421 * 3 2 1 38 38 H 1.08999 * 109.58535 * 54.46977 * 4 2 1 39 39 H 1.09002 * 109.58755 * 174.89381 * 4 2 1 40 40 H 0.96998 * 119.99441 * 180.02562 * 9 8 6 41 41 H 1.08997 * 109.56093 * 293.78048 * 14 5 4 42 42 H 1.09009 * 109.61544 * 173.35538 * 14 5 4 43 43 H 1.08999 * 109.49928 * 185.44060 * 15 14 5 44 44 H 1.09008 * 109.49628 * 65.38290 * 15 14 5 45 45 H 0.97000 * 119.99832 * 264.99773 * 18 16 15 46 46 H 1.09003 * 109.43350 * 311.87538 * 23 21 19 47 47 H 1.09010 * 109.42737 * 71.77410 * 23 21 19 48 48 H 1.08998 * 109.71599 * 69.13608 * 24 23 21 49 49 H 1.08999 * 109.72420 * 189.78344 * 24 23 21 50 50 H 1.08008 * 126.19026 * 359.87173 * 26 25 24 51 51 H 1.09004 * 109.71380 * 77.14329 * 31 30 29 52 52 H 1.08998 * 109.72274 * 316.49368 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4424 0.0000 4 6 2.0414 -0.7241 -1.2494 5 7 1.6517 -2.1384 -1.1690 6 6 0.9637 -2.7319 -2.1934 7 1 0.3078 -3.5659 -1.9917 8 6 1.1093 -2.2617 -3.4914 9 7 2.1340 -1.4966 -3.8031 10 14 -0.1492 -2.7144 -4.7955 11 1 -1.4881 -2.2219 -4.3835 12 1 0.2318 -2.0912 -6.0885 13 1 -0.1912 -4.1906 -4.9514 14 6 2.0135 -2.9043 0.0316 15 6 1.5032 -2.1553 1.2666 16 6 2.0409 -0.7227 1.2485 17 1 3.1305 -0.7439 1.2355 18 7 1.5811 -0.0137 2.4453 19 6 2.2705 -0.1205 3.5984 20 8 3.2714 -0.8040 3.6455 21 6 1.7979 0.6092 4.8293 22 1 0.7959 0.2686 5.0902 23 6 2.7517 0.3196 5.9903 24 6 2.1304 0.8078 7.3050 25 6 1.6786 2.2343 7.1115 26 6 1.3673 3.1460 8.0510 27 7 1.0186 4.2867 7.4148 28 1 0.7450 5.1153 7.8386 29 7 1.1206 4.0613 6.0336 30 6 1.5140 2.8343 5.8518 31 6 1.7663 2.1166 4.5481 32 1 -0.3634 0.5128 0.8906 33 1 -0.3634 0.5147 -0.8894 34 1 -0.3632 -1.0278 -0.0005 35 1 3.1305 1.4419 -0.0005 36 1 1.6765 1.9566 -0.8894 37 1 1.6784 1.9560 0.8905 38 1 1.6008 -0.2736 -2.1388 39 1 3.1275 -0.6465 -1.2978 40 1 2.2354 -1.1677 -4.7099 41 1 3.0974 -3.0051 0.0874 42 1 1.5545 -3.8921 -0.0123 43 1 1.8482 -2.6622 2.1679 44 1 0.4134 -2.1351 1.2553 45 1 0.7804 0.5327 2.4077 46 1 2.9331 -0.7535 6.0516 47 1 3.6958 0.8379 5.8219 48 1 1.2752 0.1828 7.5620 49 1 2.8726 0.7620 8.1019 50 1 1.3914 2.9938 9.1201 51 1 2.7232 2.4333 4.1332 52 1 0.9663 2.3424 3.8431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941233126.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:03 Heat of formation + Delta-G solvation = 42.071067 kcal Electronic energy + Delta-G solvation = -31755.812840 eV Core-core repulsion = 27756.509061 eV Total energy + Delta-G solvation = -3999.303780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76422 -40.10140 -38.33325 -36.17558 -34.55771 -32.92070 -32.40656 -31.95960 -30.91868 -29.33144 -28.66802 -26.72962 -25.92318 -25.58976 -24.61356 -22.83263 -21.73001 -21.29895 -20.55700 -20.03980 -19.12419 -18.10548 -17.87863 -17.13456 -16.43281 -15.70910 -15.55617 -14.99585 -14.86273 -14.57002 -14.12628 -14.04889 -13.89632 -13.74661 -13.52458 -13.30537 -13.22084 -13.08995 -12.87107 -12.60350 -12.30421 -12.07039 -11.63154 -11.60398 -11.46909 -11.36488 -11.26422 -11.10387 -10.99126 -10.84049 -10.66949 -10.54949 -10.50094 -10.18135 -10.08129 -9.93396 -9.71731 -9.67435 -9.58322 -9.30898 -8.71069 -8.60497 -8.41611 -6.64670 -5.77079 -3.18381 1.60805 2.44417 2.52470 2.85404 3.38643 3.43017 3.45503 3.46358 4.15473 4.41429 4.51183 4.66163 4.68284 4.86958 5.03702 5.12887 5.19654 5.27728 5.30363 5.32287 5.36557 5.44706 5.54326 5.61070 5.62156 5.68529 5.76384 5.90749 5.91935 5.99244 6.00728 6.12899 6.14176 6.16498 6.27016 6.35457 6.38512 6.45491 6.52297 6.53247 6.69761 6.75314 6.86397 6.98155 6.98487 7.03587 7.08704 7.35502 7.38890 7.64738 7.78548 7.83475 8.46413 8.47745 9.23278 9.86759 10.43764 11.31543 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023970 B = 0.002410 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.841682 B =11617.071261 C =12201.760657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.080 0.920 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.103 4.103 22 H 0.099 0.901 23 C -0.098 4.098 24 C -0.041 4.041 25 C -0.234 4.234 26 C 0.058 3.942 27 N -0.486 5.486 28 H 0.438 0.562 29 N -0.286 5.286 30 C 0.087 3.913 31 C -0.030 4.030 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.019 0.981 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.395 0.605 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.176 0.824 51 H 0.091 0.909 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.891 10.066 23.575 25.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.099 4.099 3 C -0.192 4.192 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.082 0.918 8 C -0.196 4.196 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.210 1.210 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.060 3.940 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.416 6.416 21 C -0.125 4.125 22 H 0.117 0.883 23 C -0.136 4.136 24 C -0.079 4.079 25 C -0.246 4.246 26 C -0.087 4.087 27 N -0.195 5.195 28 H 0.282 0.718 29 N -0.109 5.109 30 C -0.082 4.082 31 C -0.069 4.069 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.230 0.770 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.089 0.911 49 H 0.091 0.909 50 H 0.193 0.807 51 H 0.109 0.891 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.446 10.699 22.855 25.354 hybrid contribution -1.000 -0.064 0.009 1.002 sum -3.447 10.635 22.865 25.452 Atomic orbital electron populations 1.21742 0.94776 1.02533 0.99340 1.21557 0.96257 0.94946 0.97170 1.21762 1.00770 0.95949 1.00696 1.20826 0.96318 0.83496 0.93411 1.44042 1.65212 1.05699 1.16182 1.19113 1.17952 1.15064 0.85796 0.91773 1.25013 0.97003 1.00623 0.96917 1.70020 1.27367 1.38443 1.18846 0.86409 0.81461 0.78088 0.81053 1.21092 1.21710 1.20952 1.20880 0.96642 0.94244 0.86236 1.22436 1.00974 0.95464 0.99360 1.20990 0.99221 0.91288 0.82541 0.90149 1.46386 1.29573 1.50505 1.10535 1.20411 0.83705 0.81498 0.84377 1.90698 1.25533 1.40795 1.84613 1.21351 1.02083 0.94542 0.94480 0.88310 1.21377 0.97897 1.02551 0.91761 1.20042 0.99909 0.90192 0.97802 1.20186 1.13848 0.98775 0.91752 1.22070 1.00634 0.87024 0.98995 1.46337 1.55926 1.12725 1.04486 0.71784 1.77044 1.23634 1.17454 0.92732 1.22223 0.98234 0.91473 0.96254 1.20039 1.03653 0.91565 0.91641 0.95184 0.92995 0.91135 0.93082 0.92660 0.93768 0.88919 0.96304 0.93605 0.96286 0.92654 0.92812 0.91907 0.76993 0.90108 0.91140 0.91115 0.90866 0.80738 0.89094 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 7.83 37.16 0.29 -1.82 16 2 C -0.10 -1.70 0.56 -154.39 -0.09 -1.79 16 3 C -0.13 -2.07 8.31 37.16 0.31 -1.76 16 4 C 0.19 4.25 3.99 -3.71 -0.01 4.24 16 5 N -0.59 -14.26 2.43 -172.31 -0.42 -14.68 16 6 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 7 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 8 C 0.00 0.08 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.73 11.19 55.49 0.62 -25.11 16 10 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 15 C -0.14 -2.54 5.31 -26.61 -0.14 -2.68 16 16 C 0.16 2.76 1.57 -67.89 -0.11 2.65 16 17 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 18 N -0.72 -9.69 4.19 -53.77 -0.23 -9.91 16 19 C 0.51 7.03 7.10 -10.99 -0.08 6.95 16 20 O -0.54 -9.47 15.43 5.56 0.09 -9.38 16 21 C -0.10 -1.04 2.47 -91.57 -0.23 -1.27 16 22 H 0.10 0.89 8.10 -51.93 -0.42 0.47 16 23 C -0.10 -0.96 4.65 -26.52 -0.12 -1.08 16 24 C -0.04 -0.32 6.28 -27.59 -0.17 -0.49 16 25 C -0.23 -2.09 5.89 -104.98 -0.62 -2.71 16 26 C 0.06 0.40 11.95 -17.37 -0.21 0.20 16 27 N -0.49 -3.76 7.37 30.35 0.22 -3.54 16 28 H 0.44 1.94 8.96 -182.43 -1.64 0.30 16 29 N -0.29 -3.21 12.68 33.75 0.43 -2.79 16 30 C 0.09 0.92 7.10 -82.34 -0.58 0.34 16 31 C -0.03 -0.29 5.42 -27.57 -0.15 -0.44 16 32 H 0.03 0.40 6.58 -51.93 -0.34 0.06 16 33 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.32 5.97 -51.93 -0.31 1.01 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.58 7.36 -51.93 -0.38 0.19 16 38 H 0.09 2.38 6.04 -51.93 -0.31 2.06 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 1.15 7.93 -51.92 -0.41 0.73 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.11 6.34 -51.92 -0.33 0.78 16 45 H 0.40 4.51 6.28 -40.82 -0.26 4.26 16 46 H 0.08 0.86 7.68 -51.93 -0.40 0.46 16 47 H 0.07 0.76 8.10 -51.92 -0.42 0.34 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.18 0.55 8.06 -52.48 -0.42 0.12 16 51 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 52 H 0.09 0.79 7.85 -51.93 -0.41 0.38 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -32.50 395.92 -10.31 -42.81 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -9.80 Total: 3.63 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.16 Total: -3.38 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.63 Total: -56.03 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.50 -10.31 -42.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941233126.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.882 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds