Wall clock time and date at job start Wed Apr 1 2020 04:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00090 * 2 1 4 4 C 1.39065 * 120.00123 * 179.97438 * 2 1 3 5 5 C 1.39456 * 120.39830 * 0.02562 * 4 2 1 6 6 C 1.38222 * 118.42754 * 180.02562 * 5 4 2 7 7 C 1.39535 * 119.15746 * 0.02562 * 6 5 4 8 8 C 1.47843 * 119.63314 * 179.97438 * 7 6 5 9 9 O 1.21559 * 120.00092 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46012 * 34.96960 * 11 10 8 13 13 C 1.53045 * 109.45818 * 275.00101 * 11 10 8 14 14 C 1.53189 * 109.31183 * 178.62915 * 13 11 10 15 15 N 1.46933 * 108.77712 * 54.63310 * 14 13 11 16 16 C 1.36936 * 120.62939 * 126.36691 * 15 14 13 17 17 H 1.07995 * 120.00289 * 332.50485 * 16 15 14 18 18 C 1.38817 * 119.99502 * 152.50384 * 16 15 14 19 19 N 1.31612 * 120.00107 * 335.02596 * 18 16 15 20 20 Si 1.86801 * 119.99419 * 155.02751 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00269 * 20 18 16 22 22 H 1.48502 * 109.46928 * 209.99622 * 20 18 16 23 23 H 1.48494 * 109.47235 * 329.99781 * 20 18 16 24 24 C 1.46930 * 118.73578 * 306.64412 * 15 14 13 25 25 C 1.52757 * 109.00623 * 53.30912 * 24 15 14 26 26 C 1.53002 * 109.56342 * 185.54745 * 25 24 15 27 27 C 1.53001 * 109.36264 * 65.49898 * 25 24 15 28 28 N 1.32832 * 120.73092 * 0.25354 * 7 6 5 29 29 C 1.31328 * 121.70921 * 359.47218 * 28 7 6 30 30 H 1.09001 * 109.47666 * 270.00876 * 1 2 3 31 31 H 1.09009 * 109.47034 * 30.00491 * 1 2 3 32 32 H 1.08996 * 109.47059 * 150.00091 * 1 2 3 33 33 H 1.08998 * 109.47263 * 269.99877 * 3 2 1 34 34 H 1.08999 * 109.47590 * 29.99339 * 3 2 1 35 35 H 1.08998 * 109.47583 * 149.99906 * 3 2 1 36 36 H 1.07992 * 120.78713 * 0.02562 * 5 4 2 37 37 H 1.08005 * 120.42039 * 180.02562 * 6 5 4 38 38 H 0.97005 * 119.99959 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.49993 * 58.67374 * 13 11 10 40 40 H 1.09001 * 109.52374 * 298.59667 * 13 11 10 41 41 H 1.09000 * 109.58791 * 294.84911 * 14 13 11 42 42 H 1.09003 * 109.70663 * 174.48983 * 14 13 11 43 43 H 0.96997 * 120.00247 * 354.26122 * 19 18 16 44 44 H 1.09001 * 109.58180 * 173.14154 * 24 15 14 45 45 H 1.08991 * 109.58526 * 293.56754 * 24 15 14 46 46 H 1.08999 * 109.47539 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.47556 * 299.96818 * 26 25 24 48 48 H 1.09007 * 109.46919 * 59.96544 * 26 25 24 49 49 H 1.09002 * 109.47061 * 300.15618 * 27 25 24 50 50 H 1.09006 * 109.47136 * 60.15349 * 27 25 24 51 51 H 1.08998 * 109.47171 * 180.15460 * 27 25 24 52 52 H 1.07996 * 119.61253 * 180.27092 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1603 -1.2043 0.0005 5 6 1.4714 -2.4169 0.0005 6 6 2.2033 -3.5894 0.0016 7 6 3.5970 -3.5209 0.0032 8 6 4.3902 -4.7685 0.0050 9 8 3.8280 -5.8463 0.0055 10 7 5.7368 -4.7110 0.0060 11 6 6.5228 -5.9472 0.0072 12 1 6.0074 -6.7058 -0.5819 13 6 6.6891 -6.4443 1.4451 14 6 7.4820 -7.7550 1.4395 15 7 8.7479 -7.5389 0.7255 16 6 9.9435 -7.8537 1.3142 17 1 10.0376 -7.8338 2.3899 18 6 11.0346 -8.1984 0.5283 19 7 10.8473 -8.6981 -0.6748 20 14 12.7685 -7.9530 1.1784 21 1 13.2086 -9.1798 1.8901 22 1 13.6885 -7.6818 0.0446 23 1 12.7871 -6.8025 2.1170 24 6 8.7068 -6.9729 -0.6298 25 6 7.8998 -5.6761 -0.6031 26 6 7.7314 -5.1480 -2.0292 27 6 8.6378 -4.6368 0.2431 28 7 4.2189 -2.3472 0.0088 29 6 3.5549 -1.2141 0.0026 30 1 -0.3634 0.0002 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5833 -1.0276 34 1 1.6084 2.0284 0.5137 35 1 3.1498 1.1384 0.5138 36 1 0.3918 -2.4392 -0.0003 37 1 1.7028 -4.5465 0.0013 38 1 6.1855 -3.8509 0.0052 39 1 5.7074 -6.6148 1.8869 40 1 7.2259 -5.6968 2.0291 41 1 6.9049 -8.5291 0.9338 42 1 7.6886 -8.0639 2.4642 43 1 9.9500 -8.9033 -0.9805 44 1 9.7212 -6.7635 -0.9692 45 1 8.2315 -7.6819 -1.3076 46 1 7.1551 -4.2231 -2.0085 47 1 8.7123 -4.9551 -2.4634 48 1 7.2068 -5.8897 -2.6317 49 1 8.7586 -5.0143 1.2585 50 1 9.6185 -4.4440 -0.1919 51 1 8.0621 -3.7115 0.2656 52 1 4.0951 -0.2790 0.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941243053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:50 Heat of formation + Delta-G solvation = 31.256114 kcal Electronic energy + Delta-G solvation = -31256.755438 eV Core-core repulsion = 27256.982687 eV Total energy + Delta-G solvation = -3999.772751 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.83740 -39.69602 -38.13493 -36.99573 -34.71218 -32.99181 -32.45454 -32.03392 -30.85592 -29.07611 -28.94358 -26.75386 -26.30164 -25.94809 -24.63226 -23.55308 -22.69602 -21.73895 -20.66944 -20.20285 -18.72149 -17.78337 -17.42944 -17.22102 -16.71712 -15.76747 -15.58616 -15.22692 -14.88138 -14.62113 -14.50921 -14.37450 -13.80642 -13.78528 -13.59725 -13.54709 -13.40776 -13.22445 -13.15825 -12.87632 -12.61959 -12.49755 -12.34309 -12.21973 -11.80443 -11.42634 -11.38659 -10.87049 -10.84733 -10.77780 -10.63011 -10.34317 -10.23724 -10.08457 -10.01117 -9.94649 -9.84949 -9.72026 -9.53937 -9.17482 -8.59077 -8.29384 -7.84735 -6.80339 -6.00359 -3.15245 0.70965 1.04642 2.49726 2.87455 3.42682 3.53779 3.57575 3.72723 3.87740 4.14727 4.34047 4.42085 4.53510 4.64664 4.72779 4.78360 4.84421 5.02184 5.06371 5.13541 5.15719 5.20320 5.24155 5.45515 5.46727 5.53483 5.59330 5.61972 5.83774 5.89312 5.97241 6.07971 6.13024 6.14606 6.23668 6.32257 6.42149 6.48145 6.50336 6.54707 6.67546 6.71160 6.79461 6.81665 6.90462 6.95044 7.01367 7.18502 7.24203 7.59399 7.93513 8.07752 8.49673 8.64355 9.18732 9.91762 10.37049 11.28416 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.002272 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.073455 B =12318.407321 C =12777.045557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.625 5.625 3 C 0.087 3.913 4 C 0.184 3.816 5 C -0.171 4.171 6 C -0.057 4.057 7 C 0.016 3.984 8 C 0.572 3.428 9 O -0.545 6.545 10 N -0.701 5.701 11 C 0.163 3.837 12 H 0.080 0.920 13 C -0.143 4.143 14 C 0.150 3.850 15 N -0.596 5.596 16 C -0.344 4.344 17 H 0.055 0.945 18 C -0.025 4.025 19 N -0.917 5.917 20 Si 1.063 2.937 21 H -0.295 1.295 22 H -0.287 1.287 23 H -0.293 1.293 24 C 0.166 3.834 25 C -0.090 4.090 26 C -0.136 4.136 27 C -0.128 4.128 28 N -0.415 5.415 29 C 0.027 3.973 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.406 0.594 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.018 0.982 42 H 0.057 0.943 43 H 0.269 0.731 44 H 0.085 0.915 45 H 0.017 0.983 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.071 0.929 50 H 0.052 0.948 51 H 0.034 0.966 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 21.370 -0.071 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.335 5.335 3 C -0.055 4.055 4 C 0.077 3.923 5 C -0.201 4.201 6 C -0.079 4.079 7 C -0.123 4.123 8 C 0.357 3.643 9 O -0.423 6.423 10 N -0.351 5.351 11 C 0.059 3.941 12 H 0.098 0.902 13 C -0.183 4.183 14 C 0.023 3.977 15 N -0.319 5.319 16 C -0.473 4.473 17 H 0.073 0.927 18 C -0.226 4.226 19 N -0.558 5.558 20 Si 0.893 3.107 21 H -0.223 1.223 22 H -0.213 1.213 23 H -0.219 1.219 24 C 0.039 3.961 25 C -0.093 4.093 26 C -0.194 4.194 27 C -0.186 4.186 28 N -0.125 5.125 29 C -0.140 4.140 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.165 0.835 38 H 0.242 0.758 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.036 0.964 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.053 0.947 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.306 20.615 -0.435 27.573 hybrid contribution -2.521 0.668 0.461 2.648 sum -20.827 21.283 0.026 29.778 Atomic orbital electron populations 1.21738 0.79002 1.03098 1.01643 1.46235 1.05425 1.03135 1.78674 1.21762 0.97459 0.84536 1.01792 1.19100 0.92981 0.86640 0.93546 1.21075 1.00477 0.90447 1.08090 1.21883 0.93538 0.99338 0.93109 1.20936 0.91809 0.91826 1.07746 1.17758 0.82558 0.87250 0.76756 1.90770 1.71214 1.29056 1.51267 1.46138 1.05410 1.10887 1.72695 1.20993 0.90712 0.85218 0.97161 0.90152 1.22435 0.99790 1.00150 0.95890 1.20866 0.87400 0.92779 0.96655 1.44106 1.01503 1.71754 1.14581 1.19942 0.88942 1.45826 0.92586 0.92726 1.25778 1.03231 0.96724 0.96916 1.70740 1.25271 1.39042 1.20699 0.83572 0.76014 0.75985 0.75120 1.22284 1.21258 1.21940 1.20905 0.99075 0.89174 0.86943 1.21335 0.94195 0.99339 0.94405 1.21793 1.01316 1.00179 0.96141 1.21759 0.99141 0.96144 1.01530 1.67370 1.40408 0.97671 1.07065 1.22365 0.89029 0.96688 1.05890 0.92847 0.91067 0.91028 0.92703 0.91029 0.90810 0.84352 0.83521 0.75755 0.92663 0.91716 0.96434 0.92477 0.91970 0.89713 0.96525 0.93335 0.92523 0.93115 0.91046 0.92861 0.94671 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.34 10.20 59.84 0.61 0.95 16 2 N -0.62 -3.85 3.39 -187.40 -0.64 -4.49 16 3 C 0.09 0.34 10.19 59.85 0.61 0.95 16 4 C 0.18 1.62 6.57 -83.67 -0.55 1.07 16 5 C -0.17 -1.56 9.28 -39.13 -0.36 -1.93 16 6 C -0.06 -0.67 9.62 -39.10 -0.38 -1.05 16 7 C 0.02 0.23 6.74 -83.02 -0.56 -0.33 16 8 C 0.57 9.60 7.76 -12.33 -0.10 9.51 16 9 O -0.55 -10.64 15.97 5.31 0.08 -10.56 16 10 N -0.70 -11.45 4.28 -54.71 -0.23 -11.68 16 11 C 0.16 3.01 1.57 -67.89 -0.11 2.90 16 12 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 13 C -0.14 -2.75 5.31 -26.61 -0.14 -2.89 16 14 C 0.15 3.31 6.52 -3.71 -0.02 3.29 16 15 N -0.60 -14.89 2.30 -172.58 -0.40 -15.29 16 16 C -0.34 -9.53 9.49 -15.06 -0.14 -9.67 16 17 H 0.05 1.53 7.94 -52.49 -0.42 1.11 16 18 C -0.02 -0.70 4.68 -17.43 -0.08 -0.78 16 19 N -0.92 -27.46 12.41 55.49 0.69 -26.77 16 20 Si 1.06 25.37 29.99 -169.99 -5.10 20.27 16 21 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 C 0.17 3.86 3.33 -3.93 -0.01 3.85 16 25 C -0.09 -1.69 0.56 -154.61 -0.09 -1.78 16 26 C -0.14 -2.26 8.31 37.16 0.31 -1.95 16 27 C -0.13 -2.32 7.82 37.16 0.29 -2.03 16 28 N -0.41 -5.32 9.52 -9.63 -0.09 -5.42 16 29 C 0.03 0.27 10.37 -17.31 -0.18 0.09 16 30 H 0.05 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.17 8.07 -51.92 -0.42 -0.25 16 32 H 0.07 0.26 6.22 -51.93 -0.32 -0.06 16 33 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.17 8.07 -51.93 -0.42 -0.25 16 35 H 0.07 0.27 6.20 -51.93 -0.32 -0.05 16 36 H 0.14 0.90 6.25 -52.49 -0.33 0.57 16 37 H 0.15 1.67 7.63 -52.48 -0.40 1.27 16 38 H 0.41 6.15 5.97 -40.82 -0.24 5.91 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.25 6.34 -51.93 -0.33 0.92 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 43 H 0.27 8.17 6.71 -40.82 -0.27 7.89 16 44 H 0.08 2.20 6.30 -51.93 -0.33 1.88 16 45 H 0.02 0.41 7.87 -51.93 -0.41 0.00 16 46 H 0.05 0.73 7.36 -51.93 -0.38 0.34 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.03 0.54 6.58 -51.93 -0.34 0.20 16 52 H 0.16 1.17 6.14 -52.49 -0.32 0.85 16 LS Contribution 399.64 15.07 6.02 6.02 Total: -1.00 -33.13 399.64 -8.69 -41.82 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.13 Total: 5.89 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.90 Total: 0.20 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.67 Total: -63.64 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.56 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -5.10 Total: 20.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.13 -8.69 -41.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941243053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.074 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds