Wall clock time and date at job start Wed Apr 1 2020 04:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00090 * 2 1 4 4 C 1.39065 * 120.00123 * 179.97438 * 2 1 3 5 5 C 1.39456 * 120.39830 * 0.02562 * 4 2 1 6 6 C 1.38222 * 118.42754 * 180.02562 * 5 4 2 7 7 C 1.39535 * 119.15746 * 0.02562 * 6 5 4 8 8 C 1.47843 * 119.63314 * 179.97438 * 7 6 5 9 9 O 1.21559 * 120.00092 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99916 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46012 * 34.96960 * 11 10 8 13 13 C 1.53045 * 109.45818 * 275.00101 * 11 10 8 14 14 C 1.53189 * 109.31183 * 178.62915 * 13 11 10 15 15 N 1.46933 * 108.77712 * 54.63310 * 14 13 11 16 16 C 1.36936 * 120.62939 * 126.36691 * 15 14 13 17 17 H 1.07995 * 120.00289 * 332.50485 * 16 15 14 18 18 C 1.38817 * 119.99502 * 152.50384 * 16 15 14 19 19 N 1.31612 * 120.00107 * 335.02596 * 18 16 15 20 20 Si 1.86801 * 119.99419 * 155.02751 * 18 16 15 21 21 H 1.48497 * 109.47275 * 90.00269 * 20 18 16 22 22 H 1.48502 * 109.46928 * 209.99622 * 20 18 16 23 23 H 1.48494 * 109.47235 * 329.99781 * 20 18 16 24 24 C 1.46930 * 118.73578 * 306.64412 * 15 14 13 25 25 C 1.52757 * 109.00623 * 53.30912 * 24 15 14 26 26 C 1.53002 * 109.56342 * 185.54745 * 25 24 15 27 27 C 1.53001 * 109.36264 * 65.49898 * 25 24 15 28 28 N 1.32832 * 120.73092 * 0.25354 * 7 6 5 29 29 C 1.31328 * 121.70921 * 359.47218 * 28 7 6 30 30 H 1.09001 * 109.47666 * 270.00876 * 1 2 3 31 31 H 1.09009 * 109.47034 * 30.00491 * 1 2 3 32 32 H 1.08996 * 109.47059 * 150.00091 * 1 2 3 33 33 H 1.08998 * 109.47263 * 269.99877 * 3 2 1 34 34 H 1.08999 * 109.47590 * 29.99339 * 3 2 1 35 35 H 1.08998 * 109.47583 * 149.99906 * 3 2 1 36 36 H 1.07992 * 120.78713 * 0.02562 * 5 4 2 37 37 H 1.08005 * 120.42039 * 180.02562 * 6 5 4 38 38 H 0.97005 * 119.99959 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.49993 * 58.67374 * 13 11 10 40 40 H 1.09001 * 109.52374 * 298.59667 * 13 11 10 41 41 H 1.09000 * 109.58791 * 294.84911 * 14 13 11 42 42 H 1.09003 * 109.70663 * 174.48983 * 14 13 11 43 43 H 0.96997 * 120.00247 * 354.26122 * 19 18 16 44 44 H 1.09001 * 109.58180 * 173.14154 * 24 15 14 45 45 H 1.08991 * 109.58526 * 293.56754 * 24 15 14 46 46 H 1.08999 * 109.47539 * 179.97438 * 26 25 24 47 47 H 1.08997 * 109.47556 * 299.96818 * 26 25 24 48 48 H 1.09007 * 109.46919 * 59.96544 * 26 25 24 49 49 H 1.09002 * 109.47061 * 300.15618 * 27 25 24 50 50 H 1.09006 * 109.47136 * 60.15349 * 27 25 24 51 51 H 1.08998 * 109.47171 * 180.15460 * 27 25 24 52 52 H 1.07996 * 119.61253 * 180.27092 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1603 -1.2043 0.0005 5 6 1.4714 -2.4169 0.0005 6 6 2.2033 -3.5894 0.0016 7 6 3.5970 -3.5209 0.0032 8 6 4.3902 -4.7685 0.0050 9 8 3.8280 -5.8463 0.0055 10 7 5.7368 -4.7110 0.0060 11 6 6.5228 -5.9472 0.0072 12 1 6.0074 -6.7058 -0.5819 13 6 6.6891 -6.4443 1.4451 14 6 7.4820 -7.7550 1.4395 15 7 8.7479 -7.5389 0.7255 16 6 9.9435 -7.8537 1.3142 17 1 10.0376 -7.8338 2.3899 18 6 11.0346 -8.1984 0.5283 19 7 10.8473 -8.6981 -0.6748 20 14 12.7685 -7.9530 1.1784 21 1 13.2086 -9.1798 1.8901 22 1 13.6885 -7.6818 0.0446 23 1 12.7871 -6.8025 2.1170 24 6 8.7068 -6.9729 -0.6298 25 6 7.8998 -5.6761 -0.6031 26 6 7.7314 -5.1480 -2.0292 27 6 8.6378 -4.6368 0.2431 28 7 4.2189 -2.3472 0.0088 29 6 3.5549 -1.2141 0.0026 30 1 -0.3634 0.0002 1.0276 31 1 -0.3633 0.8900 -0.5140 32 1 -0.3633 -0.8900 -0.5138 33 1 2.3791 1.5833 -1.0276 34 1 1.6084 2.0284 0.5137 35 1 3.1498 1.1384 0.5138 36 1 0.3918 -2.4392 -0.0003 37 1 1.7028 -4.5465 0.0013 38 1 6.1855 -3.8509 0.0052 39 1 5.7074 -6.6148 1.8869 40 1 7.2259 -5.6968 2.0291 41 1 6.9049 -8.5291 0.9338 42 1 7.6886 -8.0639 2.4642 43 1 9.9500 -8.9033 -0.9805 44 1 9.7212 -6.7635 -0.9692 45 1 8.2315 -7.6819 -1.3076 46 1 7.1551 -4.2231 -2.0085 47 1 8.7123 -4.9551 -2.4634 48 1 7.2068 -5.8897 -2.6317 49 1 8.7586 -5.0143 1.2585 50 1 9.6185 -4.4440 -0.1919 51 1 8.0621 -3.7115 0.2656 52 1 4.0951 -0.2790 0.0030 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941243053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:49 Heat of formation + Delta-G solvation = 10.640434 kcal Electronic energy + Delta-G solvation = -31257.649401 eV Core-core repulsion = 27256.982687 eV Total energy + Delta-G solvation = -4000.666714 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.81472 -40.98474 -39.52143 -37.70191 -36.50103 -34.39909 -33.94286 -33.28114 -31.81229 -30.74367 -29.31213 -28.24621 -27.78465 -27.27153 -26.09281 -24.34680 -24.08905 -22.83535 -22.44516 -21.41642 -20.01850 -19.47785 -18.81566 -18.15785 -17.66472 -16.82863 -16.40037 -16.38919 -16.23029 -15.98042 -15.71485 -15.45535 -15.31905 -15.24495 -15.07446 -14.98575 -14.49988 -14.29521 -14.11958 -13.95208 -13.67258 -13.58414 -13.39018 -13.01935 -12.99895 -12.92753 -12.68739 -12.61074 -12.53065 -12.45595 -12.13493 -11.88374 -11.79681 -11.69507 -11.44945 -11.39671 -11.31815 -11.08153 -10.64685 -10.53847 -10.43827 -10.01659 -8.91092 -8.44665 -8.21970 -5.35832 -0.16990 0.29531 1.60215 1.67958 1.78385 1.85616 2.00946 2.17756 2.67580 2.93513 3.23854 3.26866 3.52182 3.62704 3.73803 3.74374 3.87772 3.99447 4.02967 4.10999 4.24136 4.27189 4.32871 4.44648 4.47904 4.51212 4.55504 4.70869 4.72189 4.76478 4.76837 4.82529 4.85643 4.89170 4.90008 4.94537 4.97867 5.00745 5.08655 5.12810 5.13444 5.24000 5.27989 5.36642 5.39299 5.52083 5.59829 5.87527 6.08026 6.19288 6.41575 6.50223 6.89608 7.06673 7.23785 7.80215 8.25177 9.03499 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024214 B = 0.002272 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.073455 B =12318.407321 C =12777.045557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.618 5.618 3 C 0.077 3.923 4 C 0.197 3.803 5 C -0.173 4.173 6 C -0.060 4.060 7 C -0.021 4.021 8 C 0.571 3.429 9 O -0.583 6.583 10 N -0.693 5.693 11 C 0.175 3.825 12 H 0.057 0.943 13 C -0.127 4.127 14 C 0.148 3.852 15 N -0.610 5.610 16 C -0.347 4.347 17 H 0.050 0.950 18 C -0.075 4.075 19 N -0.942 5.942 20 Si 1.114 2.886 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.274 1.274 24 C 0.175 3.825 25 C -0.081 4.081 26 C -0.130 4.130 27 C -0.120 4.120 28 N -0.428 5.428 29 C 0.021 3.979 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.414 0.586 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.007 0.993 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.056 0.944 45 H -0.006 1.006 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.044 0.956 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.067 0.933 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.878 25.370 0.462 33.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.325 5.325 3 C -0.064 4.064 4 C 0.087 3.913 5 C -0.203 4.203 6 C -0.082 4.082 7 C -0.159 4.159 8 C 0.358 3.642 9 O -0.463 6.463 10 N -0.344 5.344 11 C 0.070 3.930 12 H 0.075 0.925 13 C -0.167 4.167 14 C 0.021 3.979 15 N -0.333 5.333 16 C -0.477 4.477 17 H 0.068 0.932 18 C -0.271 4.271 19 N -0.584 5.584 20 Si 0.939 3.061 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.200 1.200 24 C 0.049 3.951 25 C -0.083 4.083 26 C -0.188 4.188 27 C -0.178 4.178 28 N -0.138 5.138 29 C -0.147 4.147 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.183 0.817 37 H 0.159 0.841 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.025 0.975 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.012 0.988 46 H 0.090 0.910 47 H 0.079 0.921 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.086 0.914 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.846 24.672 0.111 31.663 hybrid contribution -2.262 -0.408 0.311 2.319 sum -22.108 24.264 0.422 32.828 Atomic orbital electron populations 1.21982 0.77450 1.04352 1.02570 1.46610 1.06612 1.02933 1.76304 1.22007 0.97872 0.83810 1.02743 1.19205 0.92871 0.87651 0.91609 1.21290 1.01675 0.89620 1.07681 1.21900 0.92882 1.00254 0.93141 1.20477 0.92157 0.91045 1.12183 1.18234 0.82420 0.88043 0.75480 1.90736 1.71788 1.30788 1.52978 1.45905 1.05409 1.10091 1.72985 1.20624 0.90515 0.85852 0.96011 0.92524 1.22236 0.99287 0.98523 0.96694 1.20935 0.86661 0.94213 0.96050 1.44293 1.01735 1.72202 1.15107 1.20166 0.90033 1.44872 0.92583 0.93179 1.27132 1.06877 0.96346 0.96731 1.70867 1.24112 1.41482 1.21983 0.82887 0.71653 0.76768 0.74830 1.21292 1.21552 1.19974 1.20731 0.97959 0.90816 0.85618 1.21152 0.93635 0.97214 0.96341 1.21736 1.01892 1.00878 0.94266 1.21669 0.99349 0.96961 0.99789 1.67259 1.41129 0.97929 1.07516 1.22808 0.89905 0.96632 1.05400 0.92006 0.89030 0.90694 0.91816 0.89015 0.90501 0.81684 0.84097 0.74804 0.92300 0.91204 0.97476 0.92584 0.93748 0.92551 0.98763 0.91034 0.92129 0.93676 0.93122 0.93276 0.91421 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 10.20 127.77 1.30 1.60 16 2 N -0.62 -5.17 3.39 -746.81 -2.53 -7.71 16 3 C 0.08 0.29 10.19 127.77 1.30 1.59 16 4 C 0.20 2.88 6.57 38.58 0.25 3.13 16 5 C -0.17 -2.77 9.28 22.56 0.21 -2.56 16 6 C -0.06 -1.38 9.62 22.58 0.22 -1.16 16 7 C -0.02 -0.57 6.74 41.85 0.28 -0.29 16 8 C 0.57 19.39 7.76 86.79 0.67 20.06 16 9 O -0.58 -23.50 15.97 -3.90 -0.06 -23.57 16 10 N -0.69 -22.47 4.28 -445.28 -1.90 -24.37 16 11 C 0.17 6.58 1.57 45.02 0.07 6.65 16 12 H 0.06 2.43 7.57 -2.39 -0.02 2.41 16 13 C -0.13 -5.00 5.31 30.67 0.16 -4.84 16 14 C 0.15 6.77 6.52 86.36 0.56 7.33 16 15 N -0.61 -31.55 2.30 -699.92 -1.61 -33.16 16 16 C -0.35 -19.67 9.49 84.03 0.80 -18.87 16 17 H 0.05 2.85 7.94 -2.91 -0.02 2.82 16 18 C -0.07 -4.30 4.68 84.86 0.40 -3.90 16 19 N -0.94 -58.31 12.41 21.65 0.27 -58.04 16 20 Si 1.11 51.61 29.99 68.60 2.06 53.67 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 C 0.18 8.51 3.33 86.22 0.29 8.80 16 25 C -0.08 -3.08 0.56 -52.25 -0.03 -3.11 16 26 C -0.13 -4.26 8.31 71.98 0.60 -3.67 16 27 C -0.12 -4.26 7.82 71.98 0.56 -3.70 16 28 N -0.43 -10.31 9.52 -184.38 -1.76 -12.07 16 29 C 0.02 0.36 10.37 85.06 0.88 1.24 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.09 0.02 8.07 -2.38 -0.02 0.00 16 32 H 0.07 0.26 6.22 -2.39 -0.01 0.25 16 33 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.09 0.02 8.07 -2.39 -0.02 0.00 16 35 H 0.08 0.27 6.20 -2.39 -0.01 0.25 16 36 H 0.17 1.63 6.25 -2.91 -0.02 1.61 16 37 H 0.14 3.27 7.63 -2.91 -0.02 3.25 16 38 H 0.41 12.00 5.97 -92.70 -0.55 11.44 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.07 2.68 6.34 -2.39 -0.02 2.67 16 41 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 42 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 43 H 0.25 16.10 6.71 -92.71 -0.62 15.48 16 44 H 0.06 3.06 6.30 -2.39 -0.02 3.04 16 45 H -0.01 -0.29 7.87 -2.39 -0.02 -0.31 16 46 H 0.07 2.02 7.36 -2.39 -0.02 2.01 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 49 H 0.05 2.01 5.97 -2.39 -0.01 1.99 16 50 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 51 H 0.07 1.94 6.58 -2.39 -0.02 1.92 16 52 H 0.18 2.07 6.14 -2.91 -0.02 2.06 16 Total: -1.00 -74.85 399.64 3.52 -71.33 By element: Atomic # 1 Polarization: 25.08 SS G_CDS: 0.53 Total: 25.60 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 8.54 Total: 8.31 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -7.53 Total: -135.34 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.57 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.67 kcal Total: -74.85 3.52 -71.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941243053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.971 kcal (2) G-P(sol) polarization free energy of solvation -74.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds