Wall clock time and date at job start Wed Apr 1 2020 04:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46496 * 119.99783 * 2 1 4 4 C 1.39191 * 119.99836 * 180.02562 * 2 1 3 5 5 C 1.39416 * 120.83312 * 354.35688 * 4 2 1 6 6 C 1.38230 * 119.26231 * 179.97438 * 5 4 2 7 7 N 1.31648 * 120.99588 * 0.02562 * 6 5 4 8 8 C 1.32821 * 121.82639 * 359.97438 * 7 6 5 9 9 C 1.48183 * 119.68869 * 179.97438 * 8 7 6 10 10 O 1.21514 * 120.00124 * 180.02562 * 9 8 7 11 11 N 1.34780 * 120.00104 * 0.02604 * 9 8 7 12 12 C 1.46497 * 120.00198 * 180.02562 * 11 9 8 13 13 H 1.09006 * 109.45964 * 34.99276 * 12 11 9 14 14 C 1.53049 * 109.45834 * 275.02558 * 12 11 9 15 15 C 1.53187 * 109.31358 * 178.61136 * 14 12 11 16 16 N 1.46927 * 108.77482 * 54.63743 * 15 14 12 17 17 C 1.36935 * 120.63578 * 126.40974 * 16 15 14 18 18 H 1.07997 * 119.99693 * 330.54624 * 17 16 15 19 19 C 1.38808 * 120.00137 * 150.54027 * 17 16 15 20 20 N 1.31625 * 119.99947 * 160.57056 * 19 17 16 21 21 Si 1.86799 * 120.00384 * 340.57803 * 19 17 16 22 22 H 1.48501 * 109.47007 * 89.96888 * 21 19 17 23 23 H 1.48496 * 109.47380 * 209.97139 * 21 19 17 24 24 H 1.48502 * 109.46927 * 329.97054 * 21 19 17 25 25 C 1.46934 * 118.73513 * 306.38852 * 16 15 14 26 26 C 1.53032 * 109.46318 * 154.97077 * 12 11 9 27 27 C 1.52995 * 109.49596 * 301.33511 * 26 12 11 28 28 C 1.53003 * 109.49847 * 61.43121 * 26 12 11 29 29 C 1.39033 * 120.62467 * 0.02562 * 8 7 6 30 30 H 1.08999 * 109.47162 * 185.15483 * 1 2 3 31 31 H 1.09000 * 109.46711 * 305.14938 * 1 2 3 32 32 H 1.09003 * 109.47110 * 65.14762 * 1 2 3 33 33 H 1.09004 * 109.47336 * 270.00188 * 3 2 1 34 34 H 1.09003 * 109.47296 * 30.00168 * 3 2 1 35 35 H 1.08998 * 109.47197 * 150.00563 * 3 2 1 36 36 H 1.07997 * 120.36990 * 359.95944 * 5 4 2 37 37 H 1.08007 * 119.49817 * 179.72232 * 6 5 4 38 38 H 0.96993 * 119.99594 * 359.97438 * 11 9 8 39 39 H 1.09000 * 109.49106 * 298.56643 * 14 12 11 40 40 H 1.09003 * 109.49481 * 58.62537 * 14 12 11 41 41 H 1.09003 * 109.58538 * 174.41975 * 15 14 12 42 42 H 1.08992 * 109.59139 * 294.70638 * 15 14 12 43 43 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58235 * 173.39438 * 25 16 15 45 45 H 1.09002 * 109.58497 * 293.67696 * 25 16 15 46 46 H 1.09003 * 109.47550 * 60.00216 * 27 26 12 47 47 H 1.09001 * 109.47128 * 179.97438 * 27 26 12 48 48 H 1.09001 * 109.47467 * 299.99443 * 27 26 12 49 49 H 1.08998 * 109.46777 * 60.00086 * 28 26 12 50 50 H 1.08998 * 109.47307 * 180.02562 * 28 26 12 51 51 H 1.09001 * 109.47291 * 300.00122 * 28 26 12 52 52 H 1.08003 * 120.52352 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1610 -1.2054 -0.0005 5 6 1.4865 -2.4200 0.1166 6 6 2.2100 -3.5978 0.1118 7 7 3.5216 -3.5874 -0.0009 8 6 4.2058 -2.4547 -0.1149 9 6 5.6819 -2.4981 -0.2385 10 8 6.3135 -1.4653 -0.3427 11 7 6.3238 -3.6832 -0.2355 12 6 7.7831 -3.7261 -0.3571 13 1 8.2157 -2.8677 0.1568 14 6 8.1728 -3.6843 -1.8365 15 6 9.6998 -3.6943 -1.9587 16 7 10.2249 -4.8565 -1.2290 17 6 11.0592 -5.7495 -1.8467 18 1 10.9799 -5.9154 -2.9109 19 6 12.0069 -6.4414 -1.1052 20 7 12.5377 -7.5470 -1.5831 21 14 12.5288 -5.8037 0.5713 22 1 11.6485 -6.3834 1.6174 23 1 13.9362 -6.1975 0.8345 24 1 12.4165 -4.3231 0.5945 25 6 9.8382 -5.0419 0.1763 26 6 8.3096 -5.0169 0.2742 27 6 7.8914 -5.0736 1.7448 28 6 7.7302 -6.2223 -0.4690 29 6 3.5503 -1.2286 -0.1183 30 1 -0.3633 -1.0235 0.0923 31 1 -0.3633 0.5917 0.8403 32 1 -0.3633 0.4319 -0.9325 33 1 2.3792 1.5834 -1.0277 34 1 1.6084 2.0284 0.5139 35 1 3.1500 1.1384 0.5137 36 1 0.4108 -2.4403 0.2103 37 1 1.6918 -4.5407 0.2069 38 1 5.8196 -4.5076 -0.1520 39 1 7.7613 -4.5557 -2.3459 40 1 7.7769 -2.7763 -2.2915 41 1 9.9818 -3.7645 -3.0093 42 1 10.1066 -2.7778 -1.5316 43 1 13.1997 -8.0307 -1.0648 44 1 10.2116 -6.0013 0.5344 45 1 10.2586 -4.2377 0.7802 46 1 6.8038 -5.0528 1.8144 47 1 8.2663 -5.9933 2.1940 48 1 8.3059 -4.2154 2.2738 49 1 8.0299 -6.1817 -1.5162 50 1 8.1051 -7.1414 -0.0187 51 1 6.6425 -6.2024 -0.4013 52 1 4.1083 -0.3085 -0.2115 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941243624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:59 Heat of formation + Delta-G solvation = 40.181997 kcal Electronic energy + Delta-G solvation = -31428.659575 eV Core-core repulsion = 27429.273879 eV Total energy + Delta-G solvation = -3999.385696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85827 -39.76526 -38.18724 -37.18813 -34.70911 -32.98112 -32.12189 -31.70152 -31.46662 -29.99336 -28.79206 -26.82220 -26.21437 -25.89968 -25.33693 -23.74654 -22.62669 -22.15803 -20.48408 -20.16101 -18.80806 -18.04918 -17.22559 -16.93740 -16.23520 -15.74390 -15.71322 -15.46702 -15.04394 -14.94533 -14.62200 -14.37710 -14.28491 -14.12671 -13.69650 -13.62925 -13.44000 -13.13036 -13.07096 -12.82397 -12.69007 -12.61103 -12.37894 -11.97857 -11.69024 -11.66324 -11.61407 -11.16097 -11.04299 -10.98598 -10.70390 -10.61344 -10.37685 -10.19799 -10.08574 -9.84766 -9.72267 -9.55094 -9.42789 -9.38038 -8.66365 -8.55541 -8.08407 -6.89364 -5.90930 -3.28096 0.56865 1.19093 2.51944 2.81542 3.27214 3.35220 3.52125 3.56095 3.83177 4.13025 4.35937 4.42928 4.57044 4.71135 4.79989 4.82860 4.90939 4.98327 5.04050 5.06765 5.13310 5.21284 5.27401 5.33330 5.35858 5.41516 5.48732 5.55807 5.66338 5.77867 5.83507 5.93384 6.04052 6.10638 6.19534 6.24320 6.31381 6.36637 6.41530 6.49833 6.59559 6.63169 6.65500 6.70928 6.77770 6.84740 6.84952 6.89616 7.10263 7.57758 7.86904 8.02627 8.35831 8.38082 8.98896 9.76438 10.15446 11.25131 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025274 B = 0.002418 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.607516 B =11578.427926 C =11880.514750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.628 5.628 3 C 0.088 3.912 4 C 0.243 3.757 5 C -0.240 4.240 6 C 0.140 3.860 7 N -0.501 5.501 8 C 0.125 3.875 9 C 0.566 3.434 10 O -0.538 6.538 11 N -0.697 5.697 12 C 0.161 3.839 13 H 0.083 0.917 14 C -0.145 4.145 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.255 4.255 18 H 0.085 0.915 19 C 0.025 3.975 20 N -0.909 5.909 21 Si 0.880 3.120 22 H -0.287 1.287 23 H -0.304 1.304 24 H -0.271 1.271 25 C 0.140 3.860 26 C -0.088 4.088 27 C -0.141 4.141 28 C -0.130 4.130 29 C -0.189 4.189 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.160 0.840 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.066 0.934 42 H 0.024 0.976 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.025 0.975 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.075 0.925 50 H 0.054 0.946 51 H 0.038 0.962 52 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.957 13.080 5.291 30.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.339 5.339 3 C -0.055 4.055 4 C 0.132 3.868 5 C -0.265 4.265 6 C -0.019 4.019 7 N -0.216 5.216 8 C -0.012 4.012 9 C 0.350 3.650 10 O -0.415 6.415 11 N -0.347 5.347 12 C 0.057 3.943 13 H 0.101 0.899 14 C -0.185 4.185 15 C 0.024 3.976 16 N -0.326 5.326 17 C -0.383 4.383 18 H 0.102 0.898 19 C -0.174 4.174 20 N -0.552 5.552 21 Si 0.710 3.290 22 H -0.215 1.215 23 H -0.232 1.232 24 H -0.196 1.196 25 C 0.013 3.987 26 C -0.090 4.090 27 C -0.198 4.198 28 C -0.188 4.188 29 C -0.215 4.215 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.155 0.845 37 H 0.178 0.822 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.094 0.906 50 H 0.073 0.927 51 H 0.057 0.943 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.945 13.083 5.202 29.519 hybrid contribution -0.528 0.740 1.066 1.401 sum -26.472 13.823 6.268 30.515 Atomic orbital electron populations 1.21770 0.78927 1.03333 1.01510 1.46277 1.05397 1.03126 1.79079 1.21737 0.97459 0.84406 1.01887 1.17976 0.91036 0.86433 0.91335 1.21829 1.01352 0.91977 1.11350 1.22485 0.89122 0.97552 0.92719 1.67618 1.09346 1.29223 1.15373 1.20982 0.94308 0.88966 0.96970 1.17904 0.85535 0.84312 0.77263 1.90767 1.66955 1.33381 1.50374 1.46140 1.08513 1.08484 1.71558 1.21028 0.77843 0.98472 0.96933 0.89929 1.22457 0.99225 1.01527 0.95270 1.20900 0.90191 0.89552 0.96944 1.44359 1.54396 1.25621 1.08258 1.18884 1.09645 1.15017 0.94799 0.89750 1.25315 0.97218 0.97075 0.97799 1.69824 1.31101 1.15318 1.38966 0.87004 0.76845 0.79966 0.85173 1.21461 1.23226 1.19587 1.21425 0.90202 1.00171 0.86875 1.21340 0.98815 0.94359 0.94504 1.21841 1.00693 1.01644 0.95667 1.21772 0.97866 0.96803 1.02328 1.21596 0.92480 0.99885 1.07549 0.90217 0.92159 0.92499 0.92743 0.91075 0.90793 0.84538 0.82241 0.75404 0.91262 0.92305 0.91600 0.95764 0.92833 0.90391 0.95700 0.92881 0.92480 0.93056 0.90637 0.92664 0.94333 0.83680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.63 59.85 0.64 1.02 16 2 N -0.63 -4.59 3.40 -187.36 -0.64 -5.22 16 3 C 0.09 0.52 10.14 59.84 0.61 1.13 16 4 C 0.24 2.32 6.56 -83.63 -0.55 1.77 16 5 C -0.24 -1.96 9.38 -39.15 -0.37 -2.33 16 6 C 0.14 1.29 11.17 -17.63 -0.20 1.09 16 7 N -0.50 -6.12 9.54 -9.89 -0.09 -6.21 16 8 C 0.13 1.69 6.74 -83.06 -0.56 1.13 16 9 C 0.57 8.94 7.78 -12.17 -0.09 8.85 16 10 O -0.54 -9.86 15.98 5.35 0.09 -9.78 16 11 N -0.70 -10.60 4.28 -54.60 -0.23 -10.83 16 12 C 0.16 2.76 1.57 -67.89 -0.11 2.65 16 13 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.14 -2.58 5.31 -26.61 -0.14 -2.73 16 15 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 16 N -0.60 -14.23 2.18 -172.32 -0.38 -14.60 16 17 C -0.26 -7.04 10.02 -15.06 -0.15 -7.19 16 18 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 19 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 20 N -0.91 -27.77 13.97 55.49 0.78 -27.00 16 21 Si 0.88 22.53 24.35 -169.99 -4.14 18.39 16 22 H -0.29 -7.04 6.53 56.52 0.37 -6.67 16 23 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 24 H -0.27 -6.90 6.80 56.52 0.38 -6.51 16 25 C 0.14 3.04 2.89 -3.71 -0.01 3.03 16 26 C -0.09 -1.55 0.56 -154.39 -0.09 -1.64 16 27 C -0.14 -2.17 8.31 37.15 0.31 -1.86 16 28 C -0.13 -2.25 7.83 37.16 0.29 -1.96 16 29 C -0.19 -2.24 8.74 -38.84 -0.34 -2.58 16 30 H 0.08 0.28 5.38 -51.93 -0.28 0.00 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 35 H 0.07 0.49 6.51 -51.93 -0.34 0.16 16 36 H 0.14 0.72 5.86 -52.49 -0.31 0.41 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.55 16 38 H 0.41 5.77 5.99 -40.82 -0.24 5.53 16 39 H 0.07 1.25 6.33 -51.93 -0.33 0.92 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 44 H 0.08 1.86 4.62 -51.93 -0.24 1.62 16 45 H 0.03 0.55 7.12 -51.93 -0.37 0.18 16 46 H 0.05 0.73 7.36 -51.93 -0.38 0.35 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 1.46 5.97 -51.93 -0.31 1.15 16 50 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 51 H 0.04 0.56 6.58 -51.93 -0.34 0.22 16 52 H 0.15 1.72 6.02 -52.48 -0.32 1.40 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -33.05 394.38 -7.64 -40.69 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.09 Total: 4.56 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.88 Total: 4.05 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.56 Total: -63.86 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.14 Total: 18.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.05 -7.64 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941243624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.876 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds