Wall clock time and date at job start Wed Apr 1 2020 04:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39939 * 125.74795 * 2 1 4 4 C 1.30455 * 108.89402 * 179.73624 * 3 2 1 5 5 C 1.41287 * 108.02468 * 0.41054 * 4 3 2 6 6 C 1.47421 * 126.41714 * 179.85387 * 5 4 3 7 7 O 1.21607 * 119.99958 * 179.68889 * 6 5 4 8 8 N 1.34782 * 120.00107 * 359.68956 * 6 5 4 9 9 C 1.46495 * 119.99729 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.46501 * 325.02052 * 9 8 6 11 11 C 1.53045 * 109.46106 * 85.00228 * 9 8 6 12 12 C 1.53187 * 109.31048 * 181.37990 * 11 9 8 13 13 N 1.46925 * 108.77864 * 305.36236 * 12 11 9 14 14 C 1.36940 * 120.63379 * 233.58576 * 13 12 11 15 15 H 1.07994 * 119.99946 * 149.61317 * 14 13 12 16 16 C 1.38813 * 119.99631 * 329.61736 * 14 13 12 17 17 N 1.31617 * 120.00337 * 334.73809 * 16 14 13 18 18 Si 1.86806 * 119.99911 * 154.74517 * 16 14 13 19 19 H 1.48500 * 109.46802 * 89.99494 * 18 16 14 20 20 H 1.48497 * 109.47106 * 209.99554 * 18 16 14 21 21 H 1.48495 * 109.46828 * 329.99695 * 18 16 14 22 22 C 1.46932 * 118.73866 * 53.86228 * 13 12 11 23 23 C 1.53044 * 109.45478 * 205.06273 * 9 8 6 24 24 C 1.52996 * 109.50338 * 298.57034 * 23 9 8 25 25 C 1.53004 * 109.49747 * 58.63458 * 23 9 8 26 26 C 1.34258 * 125.75813 * 180.02562 * 2 1 3 27 27 C 1.50694 * 126.29215 * 0.02562 * 26 2 1 28 28 C 1.52998 * 117.49779 * 311.44010 * 27 26 2 29 29 C 1.53003 * 117.50074 * 242.77910 * 27 26 2 30 30 H 1.08993 * 109.47030 * 272.87475 * 1 2 3 31 31 H 1.08999 * 109.47329 * 32.88027 * 1 2 3 32 32 H 1.09002 * 109.46514 * 152.88199 * 1 2 3 33 33 H 1.07998 * 125.98597 * 180.26524 * 4 3 2 34 34 H 0.96996 * 119.99598 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.49830 * 61.42931 * 11 9 8 36 36 H 1.08995 * 109.51753 * 301.34738 * 11 9 8 37 37 H 1.08998 * 109.58627 * 185.57356 * 12 11 9 38 38 H 1.09007 * 109.58680 * 65.15239 * 12 11 9 39 39 H 0.96998 * 119.99831 * 354.22256 * 17 16 14 40 40 H 1.08999 * 109.58533 * 65.92549 * 22 13 12 41 41 H 1.08998 * 109.58831 * 186.35080 * 22 13 12 42 42 H 1.08999 * 109.46987 * 59.99853 * 24 23 9 43 43 H 1.09000 * 109.47203 * 180.02562 * 24 23 9 44 44 H 1.08997 * 109.46716 * 299.99943 * 24 23 9 45 45 H 1.09007 * 109.46787 * 59.99404 * 25 23 9 46 46 H 1.08992 * 109.47617 * 179.97438 * 25 23 9 47 47 H 1.09003 * 109.46985 * 300.00355 * 25 23 9 48 48 H 1.08996 * 115.55157 * 97.10954 * 27 26 2 49 49 H 1.08997 * 117.50326 * 359.97438 * 28 27 26 50 50 H 1.09002 * 117.49987 * 145.01923 * 28 27 26 51 51 H 1.08998 * 117.49771 * 214.97952 * 29 27 26 52 52 H 1.09004 * 117.49450 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2825 1.1357 0.0000 4 6 3.5311 0.7575 0.0057 5 6 3.5600 -0.6551 0.0000 6 6 4.7639 -1.5058 0.0004 7 8 4.6528 -2.7168 0.0008 8 7 5.9879 -0.9414 0.0004 9 6 7.1843 -1.7869 0.0002 10 1 6.9950 -2.6842 0.5893 11 6 7.5281 -2.1837 -1.4373 12 6 8.7589 -3.0956 -1.4306 13 7 9.8475 -2.4155 -0.7156 14 6 11.0741 -2.2541 -1.3028 15 1 11.6838 -1.3984 -1.0532 16 6 11.5335 -3.1903 -2.2190 17 7 11.0884 -4.4281 -2.1745 18 14 12.7838 -2.6934 -3.5149 19 1 14.1553 -2.9045 -2.9860 20 1 12.5900 -3.5207 -4.7327 21 1 12.6001 -1.2598 -3.8559 22 6 9.5970 -1.9173 0.6437 23 6 8.3550 -1.0136 0.6116 24 6 8.6443 0.2280 -0.2343 25 6 7.9973 -0.5883 2.0371 26 6 2.2496 -1.0895 -0.0005 27 6 1.7851 -2.5231 -0.0017 28 6 0.7126 -2.9190 1.0150 29 6 2.1575 -3.3874 1.2047 30 1 -0.3633 0.0515 1.0263 31 1 -0.3634 0.8630 -0.5579 32 1 -0.3632 -0.9147 -0.4685 33 1 4.3917 1.4099 0.0112 34 1 6.0765 0.0245 -0.0003 35 1 7.7420 -1.2881 -2.0207 36 1 6.6850 -2.7137 -1.8803 37 1 9.0672 -3.3008 -2.4557 38 1 8.5180 -4.0309 -0.9251 39 1 10.5045 -4.7078 -1.4522 40 1 9.4230 -2.7584 1.3149 41 1 10.4584 -1.3448 0.9877 42 1 7.7607 0.8657 -0.2577 43 1 9.4785 0.7781 0.2012 44 1 8.9003 -0.0756 -1.2494 45 1 7.7923 -1.4732 2.6396 46 1 8.8314 -0.0380 2.4723 47 1 7.1131 0.0489 2.0150 48 1 1.7564 -3.0071 -0.9778 49 1 0.3431 -2.1427 1.6851 50 1 -0.0216 -3.6639 0.7079 51 1 2.3734 -4.4401 1.0222 52 1 2.7381 -2.9188 1.9994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941247575.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:34 Heat of formation + Delta-G solvation = 63.323881 kcal Electronic energy + Delta-G solvation = -31955.950544 eV Core-core repulsion = 27957.568355 eV Total energy + Delta-G solvation = -3998.382188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.59117 -41.11491 -39.27297 -37.99954 -36.50561 -34.62321 -34.13790 -33.19456 -31.75570 -31.02986 -28.29937 -28.13334 -27.29610 -26.60087 -24.83901 -23.93991 -23.49527 -22.83099 -22.39920 -21.23723 -20.62845 -19.55394 -19.35930 -18.49390 -17.29426 -17.04271 -16.64011 -16.12709 -16.04183 -15.88228 -15.77679 -15.50379 -15.36336 -15.27574 -15.02065 -15.01355 -14.54898 -14.22557 -13.90979 -13.61283 -13.50445 -13.44703 -13.04060 -12.88383 -12.74661 -12.68692 -12.51707 -12.43956 -12.39866 -12.30070 -12.24479 -11.90166 -11.75193 -11.60117 -11.56803 -11.38392 -11.23516 -11.13626 -10.74670 -10.41339 -10.40577 -10.00396 -9.58210 -8.88542 -8.20821 -5.38618 0.45649 1.13543 1.34471 1.59257 1.67575 1.84514 2.32404 2.50789 2.67580 2.73802 3.24626 3.35250 3.47209 3.55210 3.67489 3.88237 3.91708 3.93150 3.99921 4.05364 4.20479 4.24440 4.31586 4.36881 4.37341 4.49358 4.54825 4.58971 4.62934 4.71681 4.74868 4.78023 4.83908 4.89750 4.96240 4.97433 4.98495 5.07110 5.07432 5.16247 5.17590 5.19300 5.25229 5.32412 5.37305 5.39350 5.62477 5.66432 5.82342 5.90891 6.41198 6.47102 6.73577 7.08340 7.41917 7.80154 8.27356 9.02856 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.002694 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.002778 B =10392.630338 C =10801.682689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.355 5.355 3 N -0.316 5.316 4 C 0.085 3.915 5 C -0.311 4.311 6 C 0.588 3.412 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.183 3.817 10 H 0.055 0.945 11 C -0.128 4.128 12 C 0.167 3.833 13 N -0.607 5.607 14 C -0.347 4.347 15 H 0.054 0.946 16 C -0.077 4.077 17 N -0.944 5.944 18 Si 1.114 2.886 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.157 3.843 23 C -0.077 4.077 24 C -0.125 4.125 25 C -0.129 4.129 26 C 0.182 3.818 27 C -0.113 4.113 28 C -0.148 4.148 29 C -0.141 4.141 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.215 0.785 34 H 0.407 0.593 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.041 0.959 38 H -0.007 1.007 39 H 0.252 0.748 40 H 0.005 0.995 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.044 0.956 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.126 0.874 49 H 0.104 0.896 50 H 0.128 0.872 51 H 0.098 0.902 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.003 11.923 7.567 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.134 5.134 3 N -0.136 5.136 4 C -0.102 4.102 5 C -0.326 4.326 6 C 0.377 3.623 7 O -0.454 6.454 8 N -0.357 5.357 9 C 0.078 3.922 10 H 0.073 0.927 11 C -0.168 4.168 12 C 0.041 3.959 13 N -0.331 5.331 14 C -0.477 4.477 15 H 0.071 0.929 16 C -0.274 4.274 17 N -0.586 5.586 18 Si 0.939 3.061 19 H -0.210 1.210 20 H -0.220 1.220 21 H -0.198 1.198 22 C 0.031 3.969 23 C -0.079 4.079 24 C -0.182 4.182 25 C -0.187 4.187 26 C 0.048 3.952 27 C -0.133 4.133 28 C -0.184 4.184 29 C -0.179 4.179 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.129 0.871 33 H 0.231 0.769 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.011 0.989 39 H 0.061 0.939 40 H 0.023 0.977 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.144 0.856 49 H 0.122 0.878 50 H 0.146 0.854 51 H 0.117 0.883 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.204 11.623 6.249 27.567 hybrid contribution 0.307 -0.351 1.169 1.259 sum -23.897 11.272 7.418 27.443 Atomic orbital electron populations 1.22399 0.71372 1.06364 1.05343 1.48645 1.08285 1.02380 1.54043 1.77149 1.02292 1.08112 1.26023 1.24401 0.96052 0.93413 0.96373 1.20015 0.92715 0.94052 1.25795 1.17505 0.82767 0.86882 0.75132 1.90754 1.87113 1.15453 1.52088 1.45751 1.04298 1.10443 1.75254 1.20477 0.83797 0.92943 0.94971 0.92690 1.22274 0.96907 1.00067 0.97601 1.20617 0.87446 0.92230 0.95654 1.44266 1.08333 1.68231 1.12267 1.20155 0.96162 1.05721 1.25613 0.92852 1.27205 1.03206 0.92302 1.04655 1.70869 1.35727 1.16566 1.35420 0.82892 0.73791 0.75358 0.74084 1.20994 1.22035 1.19813 1.21168 0.95717 0.94464 0.85550 1.21244 0.93853 0.96178 0.96650 1.21709 1.01363 0.95520 0.99611 1.21742 1.02177 1.01142 0.93609 1.20772 0.89850 0.89960 0.94584 1.20458 1.07010 0.88136 0.97674 1.23307 0.91871 1.03665 0.99586 1.22694 0.98019 0.99649 0.97576 0.88621 0.88035 0.87056 0.76898 0.75540 0.91417 0.93435 0.93996 0.98868 0.93855 0.97663 0.92306 0.91002 0.92464 0.93804 0.93675 0.91351 0.90877 0.85626 0.87777 0.85411 0.88349 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.29 127.77 1.31 2.05 16 2 N -0.36 -6.56 3.98 -354.32 -1.41 -7.97 16 3 N -0.32 -6.82 12.50 -56.27 -0.70 -7.53 16 4 C 0.08 1.74 11.50 85.65 0.99 2.72 16 5 C -0.31 -7.77 6.13 -20.15 -0.12 -7.89 16 6 C 0.59 17.76 7.78 86.66 0.67 18.43 16 7 O -0.57 -21.24 14.18 -4.05 -0.06 -21.30 16 8 N -0.71 -19.28 4.28 -445.67 -1.91 -21.19 16 9 C 0.18 6.28 1.57 45.02 0.07 6.35 16 10 H 0.05 2.20 7.57 -2.39 -0.02 2.18 16 11 C -0.13 -5.18 5.31 30.67 0.16 -5.02 16 12 C 0.17 8.35 4.74 86.36 0.41 8.76 16 13 N -0.61 -30.51 2.24 -698.25 -1.56 -32.07 16 14 C -0.35 -19.29 9.45 84.03 0.79 -18.49 16 15 H 0.05 2.94 7.95 -2.91 -0.02 2.91 16 16 C -0.08 -4.45 4.65 84.86 0.39 -4.06 16 17 N -0.94 -59.10 12.53 21.65 0.27 -58.83 16 18 Si 1.11 51.55 29.99 68.60 2.06 53.61 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 C 0.16 6.51 5.24 86.51 0.45 6.96 16 23 C -0.08 -2.44 0.56 -51.96 -0.03 -2.47 16 24 C -0.12 -3.62 7.84 71.98 0.56 -3.06 16 25 C -0.13 -3.20 8.31 71.98 0.60 -2.61 16 26 C 0.18 4.02 6.45 42.14 0.27 4.29 16 27 C -0.11 -2.17 4.81 -11.54 -0.06 -2.22 16 28 C -0.15 -1.78 9.10 30.62 0.28 -1.50 16 29 C -0.14 -2.88 8.76 30.62 0.27 -2.61 16 30 H 0.10 0.52 8.13 -2.39 -0.02 0.50 16 31 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 0.56 7.23 -2.39 -0.02 0.54 16 33 H 0.21 2.87 7.50 -2.91 -0.02 2.85 16 34 H 0.41 8.58 5.62 -92.71 -0.52 8.06 16 35 H 0.07 2.67 6.34 -2.39 -0.02 2.65 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 2.36 6.51 -2.39 -0.02 2.34 16 38 H -0.01 -0.36 7.88 -2.38 -0.02 -0.38 16 39 H 0.25 16.24 6.87 -92.71 -0.64 15.61 16 40 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 42 H 0.07 1.55 6.58 -2.39 -0.02 1.53 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.04 1.57 5.97 -2.39 -0.01 1.56 16 45 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.07 1.49 7.36 -2.39 -0.02 1.47 16 48 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 49 H 0.10 1.02 7.67 -2.39 -0.02 1.01 16 50 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 52 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -76.18 402.03 4.25 -71.93 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.53 Total: 23.71 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 7.03 Total: -0.36 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.31 Total: -127.59 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.06 Total: -21.30 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.06 Total: 53.61 kcal Total: -76.18 4.25 -71.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941247575.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.253 kcal (2) G-P(sol) polarization free energy of solvation -76.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds