Wall clock time and date at job start Wed Apr 1 2020 04:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34672 * 126.59315 * 2 1 4 4 N 1.34120 * 108.02068 * 179.80746 * 3 2 1 5 5 C 1.30496 * 109.25808 * 0.37052 * 4 3 2 6 6 N 1.35047 * 108.69997 * 359.62677 * 5 4 3 7 7 C 1.46502 * 126.39780 * 180.24843 * 6 5 4 8 8 C 1.50698 * 109.46978 * 264.97589 * 7 6 5 9 9 O 1.21282 * 120.00385 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00186 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63887 * 359.71853 * 10 8 7 12 12 C 1.53618 * 108.53982 * 126.32829 * 11 10 8 13 13 C 1.53041 * 109.26438 * 54.86654 * 12 11 10 14 14 C 1.53029 * 109.43915 * 58.57126 * 13 12 11 15 15 C 1.53194 * 109.33617 * 181.23724 * 14 13 12 16 16 N 1.46936 * 108.77800 * 305.37472 * 15 14 13 17 17 C 1.36929 * 120.64427 * 233.61241 * 16 15 14 18 18 H 1.08008 * 119.99646 * 27.69148 * 17 16 15 19 19 C 1.38808 * 120.00561 * 207.69218 * 17 16 15 20 20 N 1.31616 * 119.99744 * 17.36411 * 19 17 16 21 21 Si 1.86801 * 120.00501 * 197.37237 * 19 17 16 22 22 H 1.48505 * 109.46874 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47290 * 119.99476 * 21 19 17 24 24 H 1.48498 * 109.47364 * 239.99940 * 21 19 17 25 25 C 1.46931 * 118.71604 * 53.64094 * 16 15 14 26 26 C 1.53042 * 109.39687 * 178.60582 * 13 12 11 27 27 C 1.53036 * 109.54579 * 298.56220 * 13 12 11 28 28 C 1.46926 * 120.64431 * 179.97438 * 10 8 7 29 29 H 1.08991 * 109.47675 * 269.96404 * 1 2 3 30 30 H 1.09010 * 109.46608 * 29.96578 * 1 2 3 31 31 H 1.09000 * 109.46736 * 149.95874 * 1 2 3 32 32 H 1.08004 * 125.98676 * 359.97438 * 3 2 1 33 33 H 1.08005 * 125.65415 * 179.88752 * 5 4 3 34 34 H 1.08995 * 109.47333 * 24.97415 * 7 6 5 35 35 H 1.08995 * 109.46716 * 144.97563 * 7 6 5 36 36 H 1.09007 * 109.58672 * 246.15925 * 11 10 8 37 37 H 1.09003 * 109.59025 * 6.58548 * 11 10 8 38 38 H 1.08996 * 109.63150 * 294.86651 * 12 11 10 39 39 H 1.09002 * 109.42840 * 174.73999 * 12 11 10 40 40 H 1.08998 * 109.49356 * 301.19454 * 14 13 12 41 41 H 1.08995 * 109.49114 * 61.28184 * 14 13 12 42 42 H 1.08998 * 109.58579 * 185.58994 * 15 14 13 43 43 H 1.08991 * 109.70222 * 65.23017 * 15 14 13 44 44 H 0.97000 * 120.00132 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.58400 * 186.56991 * 25 16 15 46 46 H 1.09000 * 109.70284 * 66.20780 * 25 16 15 47 47 H 1.09009 * 109.49027 * 298.68559 * 26 13 12 48 48 H 1.08990 * 109.49756 * 58.76958 * 26 13 12 49 49 H 1.08997 * 109.49341 * 301.34566 * 27 13 12 50 50 H 1.08995 * 109.49616 * 181.25181 * 27 13 12 51 51 H 1.08996 * 109.58893 * 353.40533 * 28 10 8 52 52 H 1.09002 * 109.58356 * 113.68698 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3099 1.0813 0.0000 4 7 3.5812 0.6541 0.0043 5 6 3.5968 -0.6508 -0.0010 6 7 2.3229 -1.0990 -0.0006 7 6 1.8943 -2.5000 -0.0004 8 6 1.6280 -2.9439 -1.4157 9 8 1.7806 -2.1666 -2.3340 10 7 1.2191 -4.2046 -1.6608 11 6 1.0345 -5.1594 -0.5595 12 6 -0.3843 -5.7415 -0.6503 13 6 -0.5961 -6.3405 -2.0426 14 6 0.4525 -7.4260 -2.2950 15 6 0.2577 -8.0025 -3.7009 16 7 -1.1313 -8.4626 -3.8351 17 6 -1.4070 -9.7419 -4.2381 18 1 -0.7009 -10.5346 -4.0392 19 6 -2.5937 -10.0199 -4.9024 20 7 -3.2880 -9.0429 -5.4460 21 14 -3.2054 -11.7807 -5.0245 22 1 -2.2497 -12.6855 -4.3366 23 1 -4.5393 -11.8871 -4.3808 24 1 -3.3131 -12.1693 -6.4537 25 6 -2.2189 -7.5232 -3.5290 26 6 -1.9966 -6.9521 -2.1250 27 6 -0.4572 -5.2421 -3.0991 28 6 0.9548 -4.6523 -3.0351 29 1 -0.3634 -0.0006 1.0275 30 1 -0.3633 0.8904 -0.5134 31 1 -0.3633 -0.8896 -0.5145 32 1 1.9865 2.1118 -0.0004 33 1 4.4819 -1.2698 -0.0011 34 1 2.6789 -3.1199 0.4332 35 1 0.9835 -2.6011 0.5897 36 1 1.7676 -5.9616 -0.6446 37 1 1.1602 -4.6464 0.3940 38 1 -1.1157 -4.9517 -0.4790 39 1 -0.5057 -6.5200 0.1029 40 1 1.4500 -6.9940 -2.2140 41 1 0.3386 -8.2202 -1.5572 42 1 0.9366 -8.8423 -3.8488 43 1 0.4610 -7.2327 -4.4451 44 1 -4.1171 -9.2371 -5.9105 45 1 -3.1743 -8.0466 -3.5636 46 1 -2.2198 -6.7122 -4.2574 47 1 -2.0886 -7.7507 -1.3888 48 1 -2.7419 -6.1830 -1.9230 49 1 -1.1881 -4.4569 -2.9058 50 1 -0.6302 -5.6651 -4.0886 51 1 1.0277 -3.8043 -3.7160 52 1 1.6833 -5.4120 -3.3183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957579581.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:45 Heat of formation + Delta-G solvation = 32.830577 kcal Electronic energy + Delta-G solvation = -31794.343039 eV Core-core repulsion = 27794.638562 eV Total energy + Delta-G solvation = -3999.704477 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.09919 -41.64874 -39.99938 -37.41965 -35.25110 -34.97201 -33.04880 -32.85295 -32.21094 -31.62305 -29.81045 -28.50318 -27.31324 -26.66145 -24.86298 -24.33069 -23.52974 -22.44923 -22.29589 -21.35024 -20.25048 -19.24813 -18.75770 -18.12697 -17.93581 -16.88308 -16.78319 -16.63054 -15.98509 -15.79968 -15.44415 -15.31848 -15.23527 -15.16531 -14.90649 -14.61968 -14.56342 -14.43849 -14.14926 -13.93229 -13.60536 -13.37754 -13.25122 -13.18314 -13.14906 -13.03729 -12.89321 -12.72072 -12.57507 -12.23255 -12.12669 -12.07185 -11.75911 -11.67699 -11.39989 -11.12038 -11.07782 -10.93140 -10.88934 -10.49448 -10.38710 -9.64775 -9.21415 -8.62539 -7.86178 -5.30306 0.98038 1.44110 1.44361 1.46688 1.56565 1.67676 2.09240 2.24080 2.51119 3.27673 3.33641 3.72861 3.74732 3.77805 3.82356 3.84965 3.87581 3.90747 4.08686 4.14680 4.26051 4.27115 4.33982 4.49215 4.53189 4.56838 4.64479 4.71098 4.73344 4.76390 4.80528 4.83137 4.85874 4.90685 5.00719 5.02756 5.08344 5.11327 5.19833 5.31603 5.35610 5.41983 5.44998 5.49514 5.58638 5.62854 5.68847 5.82751 5.84992 6.20569 6.37815 6.40579 7.02140 7.13267 7.17061 7.90620 8.40753 9.19288 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.031648 B = 0.002222 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.518951 B =12596.243757 C =12746.935964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 C -0.061 4.061 4 N -0.533 5.533 5 C 0.182 3.818 6 N -0.445 5.445 7 C 0.088 3.912 8 C 0.494 3.506 9 O -0.580 6.580 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.118 4.118 13 C -0.042 4.042 14 C -0.110 4.110 15 C 0.138 3.862 16 N -0.608 5.608 17 C -0.256 4.256 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.296 1.296 25 C 0.177 3.823 26 C -0.117 4.117 27 C -0.114 4.114 28 C 0.122 3.878 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.176 0.824 33 H 0.231 0.769 34 H 0.166 0.834 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.069 0.931 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.045 0.955 43 H 0.011 0.989 44 H 0.248 0.752 45 H 0.044 0.956 46 H -0.006 1.006 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.065 0.935 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 11.818 18.616 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.132 4.132 3 C -0.207 4.207 4 N -0.251 5.251 5 C -0.100 4.100 6 N -0.128 5.128 7 C -0.037 4.037 8 C 0.282 3.718 9 O -0.459 6.459 10 N -0.329 5.329 11 C -0.021 4.021 12 C -0.156 4.156 13 C -0.042 4.042 14 C -0.148 4.148 15 C 0.013 3.987 16 N -0.332 5.332 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.791 3.209 22 H -0.190 1.190 23 H -0.218 1.218 24 H -0.223 1.223 25 C 0.052 3.948 26 C -0.156 4.156 27 C -0.152 4.152 28 C -0.001 4.001 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.193 0.807 33 H 0.247 0.753 34 H 0.184 0.816 35 H 0.167 0.833 36 H 0.110 0.890 37 H 0.141 0.859 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.012 0.988 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.084 0.916 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.909 12.566 18.063 24.132 hybrid contribution -1.524 -1.485 -1.346 2.517 sum 8.386 11.081 16.717 21.739 Atomic orbital electron populations 1.20272 0.85607 1.03505 1.03756 1.21635 0.95695 0.86764 1.09127 1.22325 0.88550 0.99473 1.10339 1.70193 1.23451 1.10433 1.21047 1.25455 0.88166 0.91660 1.04759 1.45063 1.07112 1.06285 1.54335 1.22059 1.07286 0.80326 0.94048 1.21298 0.76876 0.81576 0.92048 1.90778 1.53710 1.53786 1.47630 1.48178 1.65302 1.10948 1.08468 1.22285 0.97492 0.92856 0.89421 1.22036 0.96891 1.00933 0.95745 1.20339 0.94710 0.93817 0.95356 1.21985 0.98407 0.97451 0.96990 1.21102 0.85730 0.96370 0.95536 1.44298 1.01045 1.10094 1.77736 1.19536 1.04020 0.85910 1.29152 0.91690 1.25757 1.00607 1.00653 0.97903 1.70198 1.16969 1.32335 1.38788 0.85271 0.77999 0.80783 0.76799 1.18967 1.21763 1.22315 1.20563 0.91813 0.90502 0.91942 1.22029 0.96682 0.99023 0.97889 1.21851 0.96077 0.97494 0.99789 1.21442 0.96516 0.98930 0.83223 0.88639 0.89573 0.92465 0.80726 0.75279 0.81628 0.83254 0.89005 0.85925 0.91179 0.88854 0.89936 0.92044 0.93642 0.97139 0.94337 0.93761 0.98826 0.92713 0.92295 0.92713 0.92800 0.91646 0.90496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.08 71.24 0.72 -0.30 16 2 C -0.02 -0.35 6.95 40.95 0.28 -0.06 16 3 C -0.06 -1.42 11.79 83.53 0.98 -0.43 16 4 N -0.53 -13.82 11.25 -200.31 -2.25 -16.07 16 5 C 0.18 3.58 12.56 180.26 2.26 5.85 16 6 N -0.44 -7.74 2.24 -518.62 -1.16 -8.91 16 7 C 0.09 0.86 4.62 85.63 0.40 1.26 16 8 C 0.49 9.41 7.77 87.66 0.68 10.09 16 9 O -0.58 -17.68 15.84 -3.04 -0.05 -17.73 16 10 N -0.60 -10.17 2.97 -818.13 -2.43 -12.60 16 11 C 0.10 0.98 5.90 86.51 0.51 1.49 16 12 C -0.12 -1.77 4.92 30.82 0.15 -1.62 16 13 C -0.04 -1.05 0.51 -52.13 -0.03 -1.08 16 14 C -0.11 -2.92 4.15 30.67 0.13 -2.80 16 15 C 0.14 5.23 6.04 86.36 0.52 5.75 16 16 N -0.61 -29.09 2.99 -699.08 -2.09 -31.19 16 17 C -0.26 -13.73 9.59 84.03 0.81 -12.93 16 18 H 0.07 3.41 7.89 -2.91 -0.02 3.39 16 19 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 20 N -0.94 -55.24 11.19 21.65 0.24 -54.99 16 21 Si 0.96 44.42 29.59 68.60 2.03 46.45 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 25 C 0.18 8.16 4.84 86.36 0.42 8.58 16 26 C -0.12 -3.87 4.90 30.67 0.15 -3.72 16 27 C -0.11 -3.15 4.14 30.66 0.13 -3.02 16 28 C 0.12 2.91 5.96 86.35 0.51 3.42 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.06 0.86 7.96 -2.39 -0.02 0.84 16 32 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.23 2.72 8.06 -2.91 -0.02 2.70 16 34 H 0.17 0.26 7.92 -2.39 -0.02 0.24 16 35 H 0.15 0.62 7.58 -2.39 -0.02 0.60 16 36 H 0.09 0.78 6.66 -2.38 -0.02 0.76 16 37 H 0.12 0.17 5.93 -2.39 -0.01 0.15 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.71 4.98 -2.39 -0.01 1.70 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.73 7.93 -2.39 -0.02 1.71 16 43 H 0.01 0.42 6.73 -2.39 -0.02 0.41 16 44 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 45 H 0.04 2.38 6.03 -2.39 -0.01 2.37 16 46 H -0.01 -0.31 6.67 -2.39 -0.02 -0.33 16 47 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 50 H 0.05 1.90 4.99 -2.39 -0.01 1.89 16 51 H 0.06 1.88 7.01 -2.39 -0.02 1.86 16 52 H 0.08 1.78 6.74 -2.39 -0.02 1.77 16 Total: -1.00 -80.30 391.60 4.25 -76.05 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.92 Total: 11.10 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 9.04 Total: 7.89 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -7.69 Total: -123.76 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.05 Total: -17.73 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -80.30 4.25 -76.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957579581.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.880 kcal (2) G-P(sol) polarization free energy of solvation -80.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds