Wall clock time and date at job start Wed Apr 1 2020 03:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30448 * 125.98743 * 2 1 4 4 N 1.39933 * 108.89617 * 180.16190 * 3 2 1 5 5 H 0.96996 * 125.75582 * 179.81231 * 4 3 2 6 6 C 1.34263 * 108.49105 * 359.55183 * 4 3 2 7 7 C 1.50704 * 126.29044 * 180.26005 * 6 4 3 8 8 C 1.38043 * 107.41821 * 0.26350 * 6 4 3 9 9 C 1.47426 * 126.41879 * 179.97438 * 8 6 4 10 10 O 1.21607 * 119.99923 * 89.99610 * 9 8 6 11 11 N 1.34769 * 120.00428 * 270.00651 * 9 8 6 12 12 C 1.46930 * 120.64191 * 359.70949 * 11 9 8 13 13 C 1.53617 * 108.53842 * 126.32988 * 12 11 9 14 14 C 1.53044 * 109.26178 * 54.86898 * 13 12 11 15 15 C 1.53034 * 109.43850 * 58.57423 * 14 13 12 16 16 C 1.53198 * 109.33404 * 181.23436 * 15 14 13 17 17 N 1.46931 * 108.77916 * 305.37196 * 16 15 14 18 18 C 1.36933 * 120.64249 * 233.61501 * 17 16 15 19 19 H 1.08004 * 119.99894 * 27.69416 * 18 17 16 20 20 C 1.38809 * 120.00277 * 207.69012 * 18 17 16 21 21 N 1.31625 * 119.99813 * 17.37027 * 20 18 17 22 22 Si 1.86802 * 120.00264 * 197.36800 * 20 18 17 23 23 H 1.48503 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46799 * 119.99898 * 22 20 18 25 25 H 1.48493 * 109.47417 * 240.00164 * 22 20 18 26 26 C 1.46920 * 118.71443 * 53.64022 * 17 16 15 27 27 C 1.53046 * 109.39539 * 178.60142 * 14 13 12 28 28 C 1.53036 * 109.54879 * 298.56562 * 14 13 12 29 29 C 1.46934 * 120.64603 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.46872 * 270.32588 * 1 2 3 31 31 H 1.09003 * 109.46897 * 30.32892 * 1 2 3 32 32 H 1.09000 * 109.47054 * 150.32691 * 1 2 3 33 33 H 1.08997 * 109.46756 * 90.03002 * 7 6 4 34 34 H 1.09000 * 109.46782 * 210.02573 * 7 6 4 35 35 H 1.09000 * 109.47124 * 330.02446 * 7 6 4 36 36 H 1.08997 * 109.59349 * 246.16064 * 12 11 9 37 37 H 1.09003 * 109.59006 * 6.59463 * 12 11 9 38 38 H 1.09001 * 109.63530 * 294.86961 * 13 12 11 39 39 H 1.09000 * 109.43180 * 174.73992 * 13 12 11 40 40 H 1.09004 * 109.49156 * 301.18728 * 15 14 13 41 41 H 1.08995 * 109.49509 * 61.27648 * 15 14 13 42 42 H 1.08995 * 109.58267 * 185.58242 * 16 15 14 43 43 H 1.09002 * 109.70010 * 65.23455 * 16 15 14 44 44 H 0.96994 * 119.99416 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58838 * 186.56903 * 26 17 16 46 46 H 1.09005 * 109.70638 * 66.21482 * 26 17 16 47 47 H 1.08996 * 109.49390 * 298.68529 * 27 14 13 48 48 H 1.08994 * 109.49531 * 58.77379 * 27 14 13 49 49 H 1.09002 * 109.48794 * 301.33549 * 28 14 13 50 50 H 1.08996 * 109.49174 * 181.25781 * 28 14 13 51 51 H 1.09000 * 109.58153 * 353.40369 * 29 11 9 52 52 H 1.09003 * 109.58669 * 113.68207 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0037 5 1 4.3842 1.2301 -0.0071 6 6 3.6439 -0.6980 0.0039 7 6 4.8801 -1.5600 0.0088 8 6 2.3373 -1.1433 0.0064 9 6 1.8915 -2.5485 0.0139 10 8 1.7079 -3.1225 1.0701 11 7 1.6877 -3.1971 -1.1497 12 6 1.8994 -2.5154 -2.4340 13 6 2.8644 -3.3585 -3.2812 14 6 2.3137 -4.7807 -3.4087 15 6 0.9262 -4.7338 -4.0525 16 6 0.3643 -6.1556 -4.1508 17 7 1.3327 -6.9986 -4.8652 18 6 0.9501 -7.7268 -5.9600 19 1 0.1288 -7.3877 -6.5739 20 6 1.6178 -8.9007 -6.2807 21 7 2.3702 -9.4969 -5.3802 22 14 1.4487 -9.6343 -7.9903 23 1 0.5534 -8.7786 -8.8098 24 1 2.7860 -9.7079 -8.6319 25 1 0.8727 -10.9992 -7.8885 26 6 2.7194 -7.0456 -4.3820 27 6 3.2553 -5.6140 -4.2813 28 6 2.2102 -5.4161 -2.0203 29 6 1.2440 -4.5978 -1.1587 30 1 -0.3633 0.0058 1.0277 31 1 -0.3633 0.8871 -0.5190 32 1 -0.3633 -0.8929 -0.5087 33 1 5.1778 -1.7623 1.0376 34 1 4.6691 -2.5005 -0.5001 35 1 5.6873 -1.0405 -0.5077 36 1 0.9471 -2.4120 -2.9542 37 1 2.3309 -1.5301 -2.2580 38 1 3.8425 -3.3888 -2.8011 39 1 2.9590 -2.9149 -4.2724 40 1 0.2624 -4.1218 -3.4419 41 1 1.0028 -4.3032 -5.0509 42 1 -0.5786 -6.1389 -4.6972 43 1 0.1997 -6.5556 -3.1503 44 1 2.8371 -10.3170 -5.6045 45 1 3.3309 -7.6163 -5.0810 46 1 2.7505 -7.5173 -3.3998 47 1 3.3110 -5.1757 -5.2777 48 1 4.2489 -5.6282 -3.8336 49 1 3.1942 -5.4281 -1.5516 50 1 1.8390 -6.4366 -2.1141 51 1 1.2430 -4.9872 -0.1407 52 1 0.2384 -4.6599 -1.5747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957620674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:55 Heat of formation + Delta-G solvation = 50.234735 kcal Electronic energy + Delta-G solvation = -32380.252100 eV Core-core repulsion = 28381.302324 eV Total energy + Delta-G solvation = -3998.949776 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.77885 -40.21031 -38.43876 -35.84544 -33.82896 -33.50818 -32.10655 -31.31851 -30.73298 -29.99334 -28.56975 -27.96051 -27.37528 -25.05428 -23.81780 -23.18403 -22.17084 -21.67421 -20.53073 -20.25152 -19.05642 -17.96006 -17.56169 -16.89963 -16.27400 -15.85801 -15.33599 -15.02628 -14.81404 -14.24295 -14.20949 -14.09979 -13.98849 -13.66420 -13.63260 -13.48213 -13.29948 -13.16183 -12.90496 -12.76875 -12.72925 -12.59751 -12.26150 -12.16052 -11.59568 -11.38807 -11.31050 -11.21025 -11.08891 -10.97247 -10.74467 -10.48528 -10.38332 -10.11872 -9.99443 -9.89854 -9.70501 -9.63418 -9.46883 -9.37288 -8.79034 -8.45358 -8.43100 -6.62873 -5.77405 -3.18676 1.42234 2.19511 2.40759 2.59137 3.17668 3.36999 3.45332 3.47208 4.18735 4.32948 4.50713 4.61946 4.78557 4.90587 4.98228 5.05134 5.09714 5.11616 5.31348 5.37704 5.38970 5.39334 5.44431 5.47454 5.51749 5.54747 5.62713 5.66320 5.70858 5.82521 5.90508 5.98992 6.05729 6.12258 6.14784 6.21788 6.24387 6.38537 6.42044 6.57688 6.61547 6.70516 6.72168 6.85987 6.87695 6.93908 7.02995 7.31091 7.39492 7.48091 7.69919 7.81529 8.23521 8.46951 9.23626 9.87589 10.44173 11.30775 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002613 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.072885 B =10712.729822 C =10889.102577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.116 3.884 3 N -0.296 5.296 4 N -0.464 5.464 5 H 0.441 0.559 6 C 0.130 3.870 7 C -0.100 4.100 8 C -0.274 4.274 9 C 0.596 3.404 10 O -0.541 6.541 11 N -0.597 5.597 12 C 0.111 3.889 13 C -0.123 4.123 14 C -0.046 4.046 15 C -0.125 4.125 16 C 0.145 3.855 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.902 5.902 22 Si 0.899 3.101 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.171 3.829 27 C -0.129 4.129 28 C -0.123 4.123 29 C 0.111 3.889 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.019 0.981 44 H 0.252 0.748 45 H 0.084 0.916 46 H 0.020 0.980 47 H 0.053 0.947 48 H 0.045 0.955 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.087 0.913 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.421 19.590 9.409 22.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 N -0.119 5.119 4 N -0.170 5.170 5 H 0.285 0.715 6 C -0.002 4.002 7 C -0.158 4.158 8 C -0.289 4.289 9 C 0.383 3.617 10 O -0.418 6.418 11 N -0.329 5.329 12 C -0.012 4.012 13 C -0.161 4.161 14 C -0.046 4.046 15 C -0.164 4.164 16 C 0.018 3.982 17 N -0.314 5.314 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.547 5.547 22 Si 0.729 3.271 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.045 3.955 27 C -0.168 4.168 28 C -0.161 4.161 29 C -0.011 4.011 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.109 0.891 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.398 20.372 9.935 22.918 hybrid contribution 0.550 -0.912 -0.983 1.449 sum 3.947 19.460 8.952 21.781 Atomic orbital electron populations 1.20266 0.86100 1.03679 1.03617 1.22327 0.96959 0.88834 0.97037 1.77081 0.86156 1.22137 1.26481 1.45957 1.07575 1.04702 1.58812 0.71477 1.21372 0.96184 0.84960 0.97696 1.20588 0.92130 0.98892 1.04209 1.19840 0.92113 0.94420 1.22532 1.17330 0.76666 0.84419 0.83315 1.90768 1.52075 1.68130 1.30857 1.48108 1.66262 1.12954 1.05608 1.21825 1.00044 0.95673 0.83644 1.22092 0.98227 0.96326 0.99437 1.20379 0.96367 0.93154 0.94705 1.22142 0.95272 0.99456 0.99535 1.20919 0.92757 0.89229 0.95246 1.44032 1.04169 1.51245 1.31937 1.19216 1.16460 1.01055 1.01143 0.91787 1.25011 1.01023 0.95785 0.97906 1.70044 1.34526 1.18357 1.31784 0.86269 0.77377 0.78772 0.84641 1.20320 1.21657 1.21791 1.20773 0.85914 0.90524 0.98260 1.22220 0.96654 0.99812 0.98151 1.22017 0.99155 1.00374 0.94553 1.21730 0.98081 0.79590 1.01675 0.89926 0.90287 0.90264 0.89334 0.89125 0.90328 0.91045 0.90493 0.92125 0.91133 0.93006 0.92449 0.93232 0.96307 0.93773 0.89779 0.96228 0.92781 0.93608 0.92358 0.89143 0.89416 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.28 36.01 0.37 -0.34 16 2 C 0.12 1.33 7.26 -82.02 -0.60 0.73 16 3 N -0.30 -3.32 12.63 33.90 0.43 -2.89 16 4 N -0.46 -4.02 7.29 33.86 0.25 -3.77 16 5 H 0.44 2.26 8.96 -182.73 -1.64 0.62 16 6 C 0.13 1.25 7.19 -81.60 -0.59 0.66 16 7 C -0.10 -0.71 10.25 36.01 0.37 -0.34 16 8 C -0.27 -3.29 3.86 -105.07 -0.41 -3.70 16 9 C 0.60 8.31 6.86 -12.52 -0.09 8.23 16 10 O -0.54 -9.45 16.52 5.27 0.09 -9.37 16 11 N -0.60 -7.57 2.97 -173.79 -0.52 -8.09 16 12 C 0.11 1.23 5.90 -3.49 -0.02 1.21 16 13 C -0.12 -1.47 4.92 -26.39 -0.13 -1.60 16 14 C -0.05 -0.68 0.51 -154.43 -0.08 -0.76 16 15 C -0.13 -1.97 4.15 -26.61 -0.11 -2.08 16 16 C 0.14 2.86 6.04 -3.70 -0.02 2.84 16 17 N -0.59 -14.16 2.99 -172.32 -0.52 -14.68 16 18 C -0.25 -6.68 9.59 -15.06 -0.14 -6.83 16 19 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 20 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 21 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.17 3.87 4.84 -3.72 -0.02 3.85 16 27 C -0.13 -2.29 4.90 -26.61 -0.13 -2.42 16 28 C -0.12 -1.83 4.14 -26.64 -0.11 -1.94 16 29 C 0.11 1.52 5.96 -3.73 -0.02 1.50 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.72 8.00 -51.93 -0.42 0.30 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.75 7.96 -51.93 -0.41 0.34 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.78 6.66 -51.93 -0.35 0.43 16 37 H 0.08 0.81 6.26 -51.93 -0.32 0.48 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.72 4.98 -51.93 -0.26 0.46 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 43 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.08 2.19 6.04 -51.93 -0.31 1.88 16 46 H 0.02 0.47 6.67 -51.93 -0.35 0.12 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.09 1.57 4.99 -51.93 -0.26 1.31 16 51 H 0.09 1.29 7.00 -51.93 -0.36 0.93 16 52 H 0.07 0.96 6.74 -51.93 -0.35 0.61 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -32.64 392.60 -10.14 -42.78 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -9.57 Total: -0.13 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -1.81 Total: -1.04 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.26 Total: -54.58 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.64 -10.14 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957620674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.016 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds