Wall clock time and date at job start Wed Apr 1 2020 03:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30448 * 125.98743 * 2 1 4 4 N 1.39933 * 108.89617 * 180.16190 * 3 2 1 5 5 H 0.96996 * 125.75582 * 179.81231 * 4 3 2 6 6 C 1.34263 * 108.49105 * 359.55183 * 4 3 2 7 7 C 1.50704 * 126.29044 * 180.26005 * 6 4 3 8 8 C 1.38043 * 107.41821 * 0.26350 * 6 4 3 9 9 C 1.47426 * 126.41879 * 179.97438 * 8 6 4 10 10 O 1.21607 * 119.99923 * 89.99610 * 9 8 6 11 11 N 1.34769 * 120.00428 * 270.00651 * 9 8 6 12 12 C 1.46930 * 120.64191 * 359.70949 * 11 9 8 13 13 C 1.53617 * 108.53842 * 126.32988 * 12 11 9 14 14 C 1.53044 * 109.26178 * 54.86898 * 13 12 11 15 15 C 1.53034 * 109.43850 * 58.57423 * 14 13 12 16 16 C 1.53198 * 109.33404 * 181.23436 * 15 14 13 17 17 N 1.46931 * 108.77916 * 305.37196 * 16 15 14 18 18 C 1.36933 * 120.64249 * 233.61501 * 17 16 15 19 19 H 1.08004 * 119.99894 * 27.69416 * 18 17 16 20 20 C 1.38809 * 120.00277 * 207.69012 * 18 17 16 21 21 N 1.31625 * 119.99813 * 17.37027 * 20 18 17 22 22 Si 1.86802 * 120.00264 * 197.36800 * 20 18 17 23 23 H 1.48503 * 109.47064 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46799 * 119.99898 * 22 20 18 25 25 H 1.48493 * 109.47417 * 240.00164 * 22 20 18 26 26 C 1.46920 * 118.71443 * 53.64022 * 17 16 15 27 27 C 1.53046 * 109.39539 * 178.60142 * 14 13 12 28 28 C 1.53036 * 109.54879 * 298.56562 * 14 13 12 29 29 C 1.46934 * 120.64603 * 179.97438 * 11 9 8 30 30 H 1.09000 * 109.46872 * 270.32588 * 1 2 3 31 31 H 1.09003 * 109.46897 * 30.32892 * 1 2 3 32 32 H 1.09000 * 109.47054 * 150.32691 * 1 2 3 33 33 H 1.08997 * 109.46756 * 90.03002 * 7 6 4 34 34 H 1.09000 * 109.46782 * 210.02573 * 7 6 4 35 35 H 1.09000 * 109.47124 * 330.02446 * 7 6 4 36 36 H 1.08997 * 109.59349 * 246.16064 * 12 11 9 37 37 H 1.09003 * 109.59006 * 6.59463 * 12 11 9 38 38 H 1.09001 * 109.63530 * 294.86961 * 13 12 11 39 39 H 1.09000 * 109.43180 * 174.73992 * 13 12 11 40 40 H 1.09004 * 109.49156 * 301.18728 * 15 14 13 41 41 H 1.08995 * 109.49509 * 61.27648 * 15 14 13 42 42 H 1.08995 * 109.58267 * 185.58242 * 16 15 14 43 43 H 1.09002 * 109.70010 * 65.23455 * 16 15 14 44 44 H 0.96994 * 119.99416 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.58838 * 186.56903 * 26 17 16 46 46 H 1.09005 * 109.70638 * 66.21482 * 26 17 16 47 47 H 1.08996 * 109.49390 * 298.68529 * 27 14 13 48 48 H 1.08994 * 109.49531 * 58.77379 * 27 14 13 49 49 H 1.09002 * 109.48794 * 301.33549 * 28 14 13 50 50 H 1.08996 * 109.49174 * 181.25781 * 28 14 13 51 51 H 1.09000 * 109.58153 * 353.40369 * 29 11 9 52 52 H 1.09003 * 109.58669 * 113.68207 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6443 -0.0037 5 1 4.3842 1.2301 -0.0071 6 6 3.6439 -0.6980 0.0039 7 6 4.8801 -1.5600 0.0088 8 6 2.3373 -1.1433 0.0064 9 6 1.8915 -2.5485 0.0139 10 8 1.7079 -3.1225 1.0701 11 7 1.6877 -3.1971 -1.1497 12 6 1.8994 -2.5154 -2.4340 13 6 2.8644 -3.3585 -3.2812 14 6 2.3137 -4.7807 -3.4087 15 6 0.9262 -4.7338 -4.0525 16 6 0.3643 -6.1556 -4.1508 17 7 1.3327 -6.9986 -4.8652 18 6 0.9501 -7.7268 -5.9600 19 1 0.1288 -7.3877 -6.5739 20 6 1.6178 -8.9007 -6.2807 21 7 2.3702 -9.4969 -5.3802 22 14 1.4487 -9.6343 -7.9903 23 1 0.5534 -8.7786 -8.8098 24 1 2.7860 -9.7079 -8.6319 25 1 0.8727 -10.9992 -7.8885 26 6 2.7194 -7.0456 -4.3820 27 6 3.2553 -5.6140 -4.2813 28 6 2.2102 -5.4161 -2.0203 29 6 1.2440 -4.5978 -1.1587 30 1 -0.3633 0.0058 1.0277 31 1 -0.3633 0.8871 -0.5190 32 1 -0.3633 -0.8929 -0.5087 33 1 5.1778 -1.7623 1.0376 34 1 4.6691 -2.5005 -0.5001 35 1 5.6873 -1.0405 -0.5077 36 1 0.9471 -2.4120 -2.9542 37 1 2.3309 -1.5301 -2.2580 38 1 3.8425 -3.3888 -2.8011 39 1 2.9590 -2.9149 -4.2724 40 1 0.2624 -4.1218 -3.4419 41 1 1.0028 -4.3032 -5.0509 42 1 -0.5786 -6.1389 -4.6972 43 1 0.1997 -6.5556 -3.1503 44 1 2.8371 -10.3170 -5.6045 45 1 3.3309 -7.6163 -5.0810 46 1 2.7505 -7.5173 -3.3998 47 1 3.3110 -5.1757 -5.2777 48 1 4.2489 -5.6282 -3.8336 49 1 3.1942 -5.4281 -1.5516 50 1 1.8390 -6.4366 -2.1141 51 1 1.2430 -4.9872 -0.1407 52 1 0.2384 -4.6599 -1.5747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957620674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:53 Heat of formation + Delta-G solvation = 30.266107 kcal Electronic energy + Delta-G solvation = -32381.118005 eV Core-core repulsion = 28381.302324 eV Total energy + Delta-G solvation = -3999.815681 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.58588 -41.36637 -39.68677 -37.30421 -35.07156 -34.52599 -33.08311 -32.88184 -31.82762 -31.54635 -29.65327 -29.01165 -28.18755 -26.65983 -25.08131 -24.45824 -23.58618 -22.87491 -21.81123 -21.11905 -20.14148 -19.16175 -18.73761 -18.20794 -17.57756 -16.92556 -16.70141 -16.16292 -16.02663 -15.71978 -15.48961 -15.21301 -15.10869 -14.89677 -14.72644 -14.58586 -14.51585 -14.24843 -14.18424 -13.80734 -13.40279 -13.33270 -13.29589 -13.13387 -13.01198 -12.95593 -12.85410 -12.69321 -12.54543 -12.21183 -12.09650 -12.05051 -11.85265 -11.71897 -11.60521 -11.16905 -11.03756 -10.92175 -10.84828 -10.45592 -10.37785 -9.61154 -9.55576 -8.59059 -7.83155 -5.26993 0.68405 1.36564 1.46167 1.48543 1.55167 1.58491 1.74537 2.18794 2.53577 3.30497 3.46836 3.57647 3.76425 3.81401 3.85932 3.87057 4.01416 4.09057 4.19793 4.32755 4.35316 4.39347 4.50546 4.59452 4.59671 4.68712 4.70680 4.72835 4.76088 4.80697 4.84965 4.87793 4.89288 4.95011 5.00417 5.02847 5.04626 5.11078 5.14547 5.23581 5.34082 5.40592 5.45407 5.48885 5.52361 5.62244 5.68505 5.71814 5.88691 6.27116 6.43710 6.45416 6.57379 7.18704 7.20254 7.93739 8.44091 9.22270 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023782 B = 0.002613 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.072885 B =10712.729822 C =10889.102577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.108 3.892 3 N -0.314 5.314 4 N -0.450 5.450 5 H 0.456 0.544 6 C 0.144 3.856 7 C -0.100 4.100 8 C -0.305 4.305 9 C 0.602 3.398 10 O -0.584 6.584 11 N -0.591 5.591 12 C 0.116 3.884 13 C -0.113 4.113 14 C -0.040 4.040 15 C -0.111 4.111 16 C 0.140 3.860 17 N -0.608 5.608 18 C -0.256 4.256 19 H 0.064 0.936 20 C -0.052 4.052 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.295 1.295 26 C 0.179 3.821 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.119 3.881 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.016 0.984 44 H 0.248 0.752 45 H 0.045 0.955 46 H -0.002 1.002 47 H 0.051 0.949 48 H 0.061 0.939 49 H 0.059 0.941 50 H 0.060 0.940 51 H 0.075 0.925 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 22.512 8.925 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 N -0.138 5.138 4 N -0.158 5.158 5 H 0.304 0.696 6 C 0.010 3.990 7 C -0.158 4.158 8 C -0.320 4.320 9 C 0.390 3.610 10 O -0.464 6.464 11 N -0.322 5.322 12 C -0.006 4.006 13 C -0.151 4.151 14 C -0.040 4.040 15 C -0.150 4.150 16 C 0.015 3.985 17 N -0.332 5.332 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.222 1.222 26 C 0.053 3.947 27 C -0.155 4.155 28 C -0.152 4.152 29 C -0.004 4.004 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.033 0.967 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.982 23.357 9.431 25.502 hybrid contribution 0.370 -1.832 -0.777 2.025 sum 4.352 21.524 8.653 23.603 Atomic orbital electron populations 1.20327 0.85150 1.04317 1.03912 1.22607 0.97833 0.88614 0.96819 1.77043 0.87137 1.22364 1.27215 1.45970 1.07504 1.04700 1.57589 0.69569 1.21674 0.96231 0.85394 0.95699 1.20699 0.91917 0.98281 1.04900 1.19779 0.93433 0.93337 1.25423 1.17574 0.75676 0.85018 0.82738 1.90745 1.53990 1.69299 1.32396 1.48113 1.65618 1.12311 1.06206 1.21908 1.00413 0.95856 0.82455 1.22000 0.98675 0.93816 1.00631 1.20314 0.95303 0.94803 0.93606 1.21993 0.96074 0.96731 1.00207 1.21077 0.92101 0.90954 0.94364 1.44295 1.05437 1.51545 1.31928 1.19528 1.16064 1.01118 1.01981 0.91845 1.25727 1.01410 0.96493 1.01101 1.70198 1.35778 1.18695 1.33439 0.85285 0.77172 0.77712 0.80764 1.19134 1.21797 1.22199 1.20557 0.85232 0.93126 0.95738 1.22027 0.97900 0.96711 0.98912 1.21861 0.99361 0.98945 0.95004 1.21544 0.97938 0.80244 1.00651 0.89821 0.88833 0.90380 0.88785 0.90160 0.87157 0.90061 0.89028 0.91134 0.89668 0.90290 0.92473 0.93672 0.96658 0.94322 0.93687 0.98391 0.93051 0.92044 0.92231 0.92173 0.90700 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.28 71.24 0.73 -0.57 16 2 C 0.11 2.27 7.26 43.52 0.32 2.58 16 3 N -0.31 -6.32 12.63 -46.67 -0.59 -6.91 16 4 N -0.45 -6.45 7.29 -46.79 -0.34 -6.79 16 5 H 0.46 3.17 8.96 -213.43 -1.91 1.26 16 6 C 0.14 2.37 7.19 42.14 0.30 2.67 16 7 C -0.10 -1.10 10.25 71.24 0.73 -0.37 16 8 C -0.30 -6.71 3.86 -20.15 -0.08 -6.79 16 9 C 0.60 15.99 6.86 86.66 0.59 16.58 16 10 O -0.58 -20.30 16.52 -4.05 -0.07 -20.37 16 11 N -0.59 -13.85 2.97 -822.02 -2.44 -16.29 16 12 C 0.12 2.17 5.90 86.50 0.51 2.68 16 13 C -0.11 -2.31 4.92 30.82 0.15 -2.16 16 14 C -0.04 -1.11 0.51 -52.13 -0.03 -1.14 16 15 C -0.11 -3.30 4.15 30.67 0.13 -3.17 16 16 C 0.14 5.52 6.04 86.36 0.52 6.04 16 17 N -0.61 -29.69 2.99 -699.09 -2.09 -31.78 16 18 C -0.26 -13.98 9.59 84.03 0.81 -13.18 16 19 H 0.06 3.40 7.89 -2.91 -0.02 3.37 16 20 C -0.05 -2.91 4.91 84.86 0.42 -2.49 16 21 N -0.93 -55.27 11.19 21.65 0.24 -55.02 16 22 Si 0.96 44.85 29.59 68.60 2.03 46.88 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 C 0.18 8.35 4.84 86.36 0.42 8.76 16 27 C -0.12 -4.03 4.90 30.67 0.15 -3.88 16 28 C -0.11 -3.32 4.14 30.65 0.13 -3.19 16 29 C 0.12 3.15 5.96 86.34 0.51 3.66 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.08 1.29 8.00 -2.39 -0.02 1.27 16 33 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.11 7.96 -2.39 -0.02 1.09 16 35 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 1.43 6.66 -2.39 -0.02 1.41 16 37 H 0.09 1.56 6.26 -2.39 -0.01 1.54 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.94 4.98 -2.39 -0.01 1.93 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.78 7.93 -2.39 -0.02 1.76 16 43 H 0.02 0.62 6.74 -2.39 -0.02 0.61 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 45 H 0.04 2.44 6.04 -2.38 -0.01 2.42 16 46 H 0.00 -0.10 6.67 -2.38 -0.02 -0.11 16 47 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.06 2.15 4.99 -2.39 -0.01 2.13 16 51 H 0.07 2.22 7.00 -2.39 -0.02 2.20 16 52 H 0.08 1.97 6.74 -2.39 -0.02 1.95 16 Total: -1.00 -73.04 392.60 2.09 -70.96 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.97 Total: 13.28 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 6.31 Total: 6.04 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -5.22 Total: -116.80 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -73.04 2.09 -70.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957620674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.225 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds