Wall clock time and date at job start Wed Apr 1 2020 03:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35315 * 126.12883 * 2 1 4 4 C 1.39870 * 107.92175 * 180.14228 * 3 2 1 5 5 C 1.50695 * 125.89713 * 179.86130 * 4 3 2 6 6 C 1.50706 * 109.47029 * 124.72036 * 5 4 3 7 7 O 1.21283 * 119.99684 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99960 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63184 * 0.02562 * 8 6 5 10 10 C 1.53194 * 108.77461 * 126.37540 * 9 8 6 11 11 C 1.53045 * 109.31440 * 54.63326 * 10 9 8 12 12 C 1.53042 * 109.53648 * 298.63537 * 11 10 9 13 13 H 1.08994 * 109.52657 * 301.39654 * 12 11 10 14 14 C 1.52998 * 109.49436 * 181.31769 * 12 11 10 15 15 H 1.09000 * 110.91838 * 302.61026 * 14 12 11 16 16 C 1.55153 * 111.00708 * 66.51270 * 14 12 11 17 17 C 1.54337 * 103.02376 * 153.38048 * 16 14 12 18 18 N 1.47023 * 107.26268 * 338.14300 * 17 16 14 19 19 C 1.36934 * 125.64748 * 178.84941 * 18 17 16 20 20 H 1.08001 * 119.99975 * 185.72945 * 19 18 17 21 21 C 1.38805 * 120.00115 * 5.46021 * 19 18 17 22 22 N 1.31628 * 120.00029 * 353.47648 * 21 19 18 23 23 Si 1.86797 * 120.00348 * 173.48127 * 21 19 18 24 24 H 1.48504 * 109.47287 * 94.97875 * 23 21 19 25 25 H 1.48501 * 109.47209 * 214.98161 * 23 21 19 26 26 H 1.48504 * 109.47224 * 334.98137 * 23 21 19 27 27 C 1.47427 * 108.70434 * 358.58298 * 18 17 16 28 28 C 1.46934 * 120.62991 * 179.97438 * 8 6 5 29 29 N 1.30837 * 108.19968 * 359.60385 * 4 3 2 30 30 N 1.34952 * 126.12855 * 179.70243 * 2 1 3 31 31 H 0.96996 * 126.03180 * 0.02562 * 30 2 1 32 32 H 1.09003 * 109.47463 * 270.31511 * 1 2 3 33 33 H 1.09000 * 109.47206 * 30.32128 * 1 2 3 34 34 H 1.09002 * 109.46901 * 150.31428 * 1 2 3 35 35 H 1.08007 * 126.03869 * 0.02673 * 3 2 1 36 36 H 1.09001 * 109.47339 * 4.72024 * 5 4 3 37 37 H 1.09003 * 109.47477 * 244.71440 * 5 4 3 38 38 H 1.09006 * 109.58534 * 246.15525 * 9 8 6 39 39 H 1.08994 * 109.58630 * 6.58655 * 9 8 6 40 40 H 1.08996 * 109.49848 * 174.58778 * 10 9 8 41 41 H 1.08996 * 109.49519 * 294.68502 * 10 9 8 42 42 H 1.08999 * 109.45988 * 178.61694 * 11 10 9 43 43 H 1.08997 * 109.45871 * 58.65770 * 11 10 9 44 44 H 1.09000 * 110.71932 * 271.94069 * 16 14 12 45 45 H 1.08994 * 110.71921 * 35.03288 * 16 14 12 46 46 H 1.08992 * 109.99336 * 218.66783 * 17 16 14 47 47 H 1.09002 * 109.77643 * 97.49402 * 17 16 14 48 48 H 0.96998 * 120.00098 * 180.02562 * 22 21 19 49 49 H 1.09003 * 110.36568 * 143.19663 * 27 18 17 50 50 H 1.08999 * 110.37043 * 265.51851 * 27 18 17 51 51 H 1.09001 * 109.58730 * 113.83972 * 28 8 6 52 52 H 1.08998 * 109.58151 * 353.41763 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0033 5 6 4.8542 1.5395 -0.0074 6 6 5.7389 1.1794 1.1583 7 8 5.4101 0.2929 1.9179 8 7 6.8948 1.8431 1.3573 9 6 7.3057 2.9205 0.4467 10 6 7.5974 4.1784 1.2711 11 6 8.6248 3.8459 2.3556 12 6 8.0543 2.7771 3.2907 13 1 7.1295 3.1409 3.7384 14 6 9.0690 2.4692 4.3935 15 1 10.0191 2.1451 3.9688 16 6 9.2656 3.6935 5.3260 17 6 9.7015 3.0491 6.6590 18 7 9.2401 1.6533 6.6402 19 6 9.4465 0.7311 7.6312 20 1 9.1478 -0.2962 7.4836 21 6 10.0446 1.1155 8.8233 22 7 10.5294 2.3323 8.9540 23 14 10.1618 -0.0939 10.2421 24 1 11.4833 -0.7705 10.2079 25 1 10.0118 0.6347 11.5273 26 1 9.0835 -1.1075 10.1189 27 6 8.5129 1.4126 5.3805 28 6 7.7675 1.5039 2.4897 29 7 3.6333 -0.6524 0.0034 30 7 2.3026 -1.0900 0.0057 31 1 2.0055 -2.0133 0.0101 32 1 -0.3634 0.0057 1.0277 33 1 -0.3633 0.8871 -0.5188 34 1 -0.3633 -0.8928 -0.5090 35 1 1.9740 2.1211 0.0004 36 1 4.5483 2.5822 0.0771 37 1 5.4034 1.3962 -0.9380 38 1 8.2044 2.6204 -0.0923 39 1 6.5034 3.1259 -0.2619 40 1 7.9951 4.9563 0.6194 41 1 6.6768 4.5292 1.7374 42 1 8.8525 4.7451 2.9280 43 1 9.5364 3.4717 1.8897 44 1 10.0445 4.3511 4.9400 45 1 8.3296 4.2381 5.4500 46 1 9.2460 3.5788 7.4955 47 1 10.7877 3.0793 6.7454 48 1 10.9477 2.6008 9.7870 49 1 8.7142 0.4066 5.0125 50 1 7.4424 1.5567 5.5269 51 1 8.7038 1.0880 2.1176 52 1 7.2698 0.7746 3.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961156924.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:02 Heat of formation + Delta-G solvation = 51.669096 kcal Electronic energy + Delta-G solvation = -30626.759709 eV Core-core repulsion = 26627.872131 eV Total energy + Delta-G solvation = -3998.887578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48722 -40.16984 -38.20454 -36.60395 -33.81489 -33.40819 -32.20180 -31.84917 -31.09010 -29.32552 -28.64691 -27.23720 -26.97985 -25.19022 -24.53894 -22.71355 -21.51242 -20.79477 -20.13753 -19.81960 -19.42948 -18.64356 -17.65856 -17.14016 -16.73144 -15.82218 -15.55949 -15.23413 -14.81015 -14.45579 -14.42562 -14.14563 -13.98130 -13.84750 -13.70309 -13.50140 -13.28298 -13.09288 -13.07500 -12.86567 -12.47889 -12.31564 -12.13350 -11.98857 -11.90030 -11.74099 -11.18529 -10.97016 -10.91686 -10.79636 -10.71826 -10.64530 -10.53222 -10.03601 -9.97788 -9.82053 -9.72675 -9.68005 -9.49699 -9.38479 -8.78575 -8.56513 -8.49056 -6.71912 -5.63809 -2.95200 1.69035 2.46050 2.65400 2.68829 3.06022 3.45588 3.51046 3.53759 4.27169 4.33192 4.52707 4.58084 4.69095 4.70994 4.82164 4.89728 4.92948 5.03606 5.07792 5.12394 5.22277 5.29105 5.40459 5.45048 5.50910 5.52019 5.54459 5.59853 5.71014 5.74870 5.78864 5.85092 5.88780 6.00218 6.01392 6.08561 6.15056 6.34898 6.36532 6.40851 6.51220 6.57648 6.65803 6.70666 6.85336 7.09368 7.09780 7.40344 7.54075 7.65620 7.73481 7.91323 8.23059 8.35716 9.31582 9.92369 10.59735 11.48475 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012326 B = 0.002337 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.158226 B =11980.544466 C =13689.874526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.266 4.266 4 C 0.087 3.913 5 C -0.058 4.058 6 C 0.515 3.485 7 O -0.520 6.520 8 N -0.613 5.613 9 C 0.106 3.894 10 C -0.135 4.135 11 C -0.114 4.114 12 C -0.086 4.086 13 H 0.073 0.927 14 C -0.095 4.095 15 H 0.073 0.927 16 C -0.135 4.135 17 C 0.177 3.823 18 N -0.607 5.607 19 C -0.224 4.224 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.140 3.860 28 C 0.117 3.883 29 N -0.260 5.260 30 N -0.475 5.475 31 H 0.436 0.564 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.042 0.958 47 H 0.041 0.959 48 H 0.251 0.749 49 H 0.036 0.964 50 H 0.018 0.982 51 H 0.066 0.934 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.516 3.838 -25.510 30.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.080 4.080 5 C -0.100 4.100 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.348 5.348 9 C -0.017 4.017 10 C -0.173 4.173 11 C -0.152 4.152 12 C -0.106 4.106 13 H 0.091 0.909 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.174 4.174 17 C 0.052 3.948 18 N -0.333 5.333 19 C -0.353 4.353 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.739 3.261 24 H -0.218 1.218 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.014 3.986 28 C -0.005 4.005 29 N -0.082 5.082 30 N -0.184 5.184 31 H 0.280 0.720 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.036 0.964 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.895 2.299 -24.871 29.081 hybrid contribution -0.471 -0.234 0.862 1.010 sum -15.366 2.065 -24.009 28.580 Atomic orbital electron populations 1.20451 0.87303 1.03788 1.03531 1.21088 0.94572 0.87804 1.01265 1.21068 0.91345 0.99167 1.17908 1.21512 0.94461 0.91626 1.00425 1.20069 0.91961 0.99147 0.98830 1.20323 0.81101 0.82057 0.86393 1.90768 1.71923 1.30262 1.46528 1.48130 1.21434 1.36094 1.29129 1.21773 1.00752 0.87203 0.91995 1.21934 1.00383 0.96783 0.98230 1.21574 0.97870 0.99364 0.96376 1.21452 0.99270 0.94676 0.95153 0.90896 1.22313 0.97584 0.97616 0.93958 0.90826 1.22878 1.00059 0.96452 0.97989 1.21133 0.98124 0.84168 0.91349 1.44492 1.62986 1.08900 1.16930 1.19078 1.33790 0.90090 0.92328 0.90534 1.24807 1.01072 0.96802 0.97936 1.69992 1.43770 1.17667 1.25569 0.86139 0.77663 0.79945 0.82316 1.21755 1.21694 1.20657 1.21582 0.94514 0.95723 0.86758 1.21720 0.93621 0.97837 0.87307 1.77419 0.95616 1.12422 1.22777 1.46335 1.04167 1.08217 1.59672 0.72002 0.90081 0.89569 0.91175 0.83568 0.87031 0.87403 0.91239 0.89981 0.90820 0.91463 0.91222 0.91844 0.92469 0.92720 0.93975 0.94093 0.93907 0.94580 0.96446 0.91603 0.88616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.43 36.00 0.38 -0.06 16 2 C 0.08 0.72 7.21 -82.26 -0.59 0.13 16 3 C -0.27 -2.64 10.64 -40.01 -0.43 -3.07 16 4 C 0.09 1.05 6.02 -82.41 -0.50 0.56 16 5 C -0.06 -0.56 4.63 -29.03 -0.13 -0.69 16 6 C 0.51 6.97 7.69 -10.98 -0.08 6.88 16 7 O -0.52 -9.64 14.97 5.55 0.08 -9.55 16 8 N -0.61 -7.24 2.97 -172.80 -0.51 -7.75 16 9 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 10 C -0.14 -1.09 6.08 -26.61 -0.16 -1.25 16 11 C -0.11 -1.22 5.04 -26.69 -0.13 -1.36 16 12 C -0.09 -1.19 1.84 -90.53 -0.17 -1.35 16 13 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 14 C -0.09 -1.65 2.57 -88.47 -0.23 -1.88 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.54 5.58 -24.89 -0.14 -2.68 16 17 C 0.18 4.45 5.38 -3.06 -0.02 4.43 16 18 N -0.61 -16.29 3.39 -170.07 -0.58 -16.87 16 19 C -0.22 -6.57 10.26 -15.06 -0.15 -6.73 16 20 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 21 C -0.01 -0.30 5.48 -17.43 -0.10 -0.40 16 22 N -0.92 -28.01 10.36 55.49 0.57 -27.43 16 23 Si 0.91 22.97 29.56 -169.99 -5.02 17.95 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 C 0.14 3.08 5.74 -2.53 -0.01 3.06 16 28 C 0.12 1.64 5.40 -3.74 -0.02 1.62 16 29 N -0.26 -3.60 12.04 33.67 0.41 -3.20 16 30 N -0.47 -4.90 7.36 33.48 0.25 -4.65 16 31 H 0.44 3.16 8.96 -182.62 -1.64 1.52 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.11 0.72 7.67 -51.93 -0.40 0.32 16 37 H 0.11 0.78 7.94 -51.93 -0.41 0.37 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.42 5.93 -51.93 -0.31 0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.77 7.45 -51.93 -0.39 0.38 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 45 H 0.05 0.98 8.01 -51.93 -0.42 0.57 16 46 H 0.04 1.17 7.39 -51.93 -0.38 0.79 16 47 H 0.04 1.13 7.52 -51.93 -0.39 0.74 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 50 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 51 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 52 H 0.10 1.63 6.42 -51.93 -0.33 1.30 16 LS Contribution 405.49 15.07 6.11 6.11 Total: -1.00 -37.92 405.49 -11.33 -49.25 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -10.12 Total: -1.86 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -2.51 Total: -1.98 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.14 Total: -59.90 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.92 -11.33 -49.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961156924.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.918 kcal (2) G-P(sol) polarization free energy of solvation -37.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds