Wall clock time and date at job start Wed Apr 1 2020 04:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33326 * 126.10537 * 2 1 4 4 C 1.30857 * 109.68530 * 180.02562 * 3 2 1 5 5 N 1.34494 * 109.16507 * 359.76321 * 4 3 2 6 6 C 1.46496 * 126.47630 * 180.25476 * 5 4 3 7 7 C 1.36668 * 126.11140 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.84189 * 359.95657 * 7 2 1 9 9 O 1.21677 * 119.99911 * 279.72087 * 8 7 2 10 10 N 1.34773 * 120.00114 * 99.72138 * 8 7 2 11 11 C 1.46927 * 120.62841 * 354.78774 * 10 8 7 12 12 C 1.53193 * 108.77615 * 126.41059 * 11 10 8 13 13 C 1.53044 * 109.30989 * 54.63793 * 12 11 10 14 14 C 1.53046 * 109.53485 * 298.63033 * 13 12 11 15 15 H 1.08995 * 109.52419 * 301.39791 * 14 13 12 16 16 C 1.53004 * 109.49561 * 181.31750 * 14 13 12 17 17 H 1.09002 * 110.64066 * 303.30948 * 16 14 13 18 18 C 1.55157 * 110.71787 * 180.16418 * 16 14 13 19 19 C 1.54912 * 101.58037 * 206.13602 * 18 16 14 20 20 N 1.47426 * 104.83358 * 37.00933 * 19 18 16 21 21 C 1.36938 * 125.65233 * 155.90328 * 20 19 18 22 22 H 1.07997 * 120.00337 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99385 * 359.97438 * 21 20 19 24 24 N 1.31617 * 120.00634 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47060 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47139 * 120.00005 * 25 23 21 28 28 H 1.48503 * 109.47198 * 239.99981 * 25 23 21 29 29 C 1.47027 * 108.70271 * 335.87380 * 20 19 18 30 30 C 1.46922 * 120.63181 * 174.80789 * 10 8 7 31 31 H 1.09003 * 109.47053 * 269.99321 * 1 2 3 32 32 H 1.08998 * 109.47494 * 29.99655 * 1 2 3 33 33 H 1.09004 * 109.46935 * 149.99801 * 1 2 3 34 34 H 1.08001 * 125.41621 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.47158 * 275.13591 * 6 5 4 36 36 H 1.09000 * 109.46872 * 35.13178 * 6 5 4 37 37 H 1.08994 * 109.47383 * 155.14047 * 6 5 4 38 38 H 1.08999 * 109.58993 * 246.19791 * 11 10 8 39 39 H 1.09004 * 109.58887 * 6.62441 * 11 10 8 40 40 H 1.09001 * 109.49868 * 174.58348 * 12 11 10 41 41 H 1.08996 * 109.50221 * 294.68402 * 12 11 10 42 42 H 1.09004 * 109.45813 * 178.61912 * 13 12 11 43 43 H 1.08996 * 109.46652 * 58.65319 * 13 12 11 44 44 H 1.09001 * 111.00423 * 324.21002 * 18 16 14 45 45 H 1.09000 * 111.00294 * 88.02734 * 18 16 14 46 46 H 1.08997 * 110.36771 * 155.85042 * 19 18 16 47 47 H 1.08998 * 110.36938 * 278.17252 * 19 18 16 48 48 H 0.96997 * 120.00645 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.87920 * 241.64044 * 29 20 19 50 50 H 1.08998 * 109.88604 * 120.47267 * 29 20 19 51 51 H 1.09003 * 109.58773 * 113.80517 * 30 10 8 52 52 H 1.08992 * 109.58880 * 353.37527 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6122 -0.6361 0.0043 6 6 4.8306 -1.4496 0.0107 7 6 2.3124 -1.1041 -0.0005 8 6 1.8822 -2.5072 -0.0002 9 8 1.5344 -3.0367 1.0386 10 7 1.8724 -3.2093 -1.1506 11 6 2.1796 -2.5547 -2.4297 12 6 3.2998 -3.3340 -3.1258 13 6 2.8902 -4.8031 -3.2540 14 6 2.6810 -5.3995 -1.8601 15 1 3.6010 -5.3077 -1.2828 16 6 2.3037 -6.8767 -1.9882 17 1 1.4166 -6.9941 -2.6106 18 6 2.0806 -7.5095 -0.5892 19 6 2.3973 -9.0001 -0.8680 20 7 3.5132 -8.9751 -1.8312 21 6 4.4254 -9.9784 -2.0221 22 1 5.2091 -9.8632 -2.7561 23 6 4.3425 -11.1435 -1.2721 24 7 3.3877 -11.2838 -0.3772 25 14 5.5864 -12.5126 -1.5330 26 1 6.5503 -12.1110 -2.5888 27 1 6.3172 -12.7656 -0.2653 28 1 4.8803 -13.7497 -1.9527 29 6 3.4840 -7.6947 -2.5533 30 6 1.5538 -4.6436 -1.1496 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.3970 1.3746 -0.0003 35 1 5.1868 -1.5784 -1.0114 36 1 5.5977 -0.9503 0.6026 37 1 4.6138 -2.4252 0.4455 38 1 1.2908 -2.5503 -3.0607 39 1 2.5057 -1.5308 -2.2471 40 1 3.4713 -2.9164 -4.1179 41 1 4.2140 -3.2613 -2.5369 42 1 3.6752 -5.3551 -3.7710 43 1 1.9626 -4.8734 -3.8220 44 1 2.7727 -7.0933 0.1428 45 1 1.0481 -7.3832 -0.2635 46 1 2.7005 -9.5018 0.0509 47 1 1.5307 -9.4969 -1.3043 48 1 3.3300 -12.0978 0.1471 49 1 3.3351 -7.8732 -3.6183 50 1 4.4184 -7.1570 -2.3925 51 1 0.6140 -4.8096 -1.6763 52 1 1.4671 -4.9979 -0.1225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961192630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:16 Heat of formation + Delta-G solvation = 47.301768 kcal Electronic energy + Delta-G solvation = -31696.033676 eV Core-core repulsion = 27696.956716 eV Total energy + Delta-G solvation = -3999.076959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55589 -40.17082 -38.28519 -36.73305 -34.78527 -33.74552 -32.41907 -31.68634 -31.04132 -29.01257 -28.76886 -27.30937 -26.44638 -25.58137 -24.56645 -22.95245 -22.67333 -21.08530 -20.49013 -19.99776 -19.46883 -19.06406 -17.76549 -16.89049 -16.81674 -16.12816 -15.76985 -15.61920 -15.10637 -14.64834 -14.53514 -14.41088 -14.05619 -13.87787 -13.81177 -13.67340 -13.34686 -13.18996 -13.04728 -12.90245 -12.62109 -12.46273 -12.41743 -12.21944 -11.86774 -11.59527 -11.39844 -11.11612 -11.07834 -10.94456 -10.86019 -10.65015 -10.63586 -10.15649 -10.09200 -10.00377 -9.90952 -9.84103 -9.72327 -9.42776 -8.82565 -8.64952 -8.64176 -6.81554 -5.64386 -3.06153 1.39846 1.92522 2.56374 2.68747 2.90979 3.38851 3.43968 3.46764 4.11751 4.22224 4.33438 4.48192 4.52250 4.65535 4.68465 4.72588 4.80498 4.89162 4.95321 5.02642 5.08749 5.20785 5.36175 5.45612 5.47608 5.49545 5.53759 5.56627 5.59516 5.65487 5.69363 5.73930 5.84723 5.86326 5.93549 5.96927 6.02504 6.21493 6.22370 6.30033 6.39787 6.40743 6.61413 6.65235 6.74617 6.77550 6.97773 7.10969 7.54867 7.64263 7.67021 7.86444 7.88203 8.38398 9.23226 9.84544 10.49950 11.39316 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002382 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.666893 B =11753.974243 C =11875.054216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.056 3.944 3 N -0.492 5.492 4 C 0.199 3.801 5 N -0.439 5.439 6 C 0.067 3.933 7 C -0.071 4.071 8 C 0.595 3.405 9 O -0.520 6.520 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.133 4.133 13 C -0.116 4.116 14 C -0.085 4.085 15 H 0.073 0.927 16 C -0.092 4.092 17 H 0.071 0.929 18 C -0.141 4.141 19 C 0.152 3.848 20 N -0.606 5.606 21 C -0.221 4.221 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.921 5.921 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.146 3.854 30 C 0.117 3.883 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.211 0.789 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.010 0.990 48 H 0.251 0.749 49 H 0.018 0.982 50 H 0.020 0.980 51 H 0.071 0.929 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.093 24.388 -3.799 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 N -0.210 5.210 4 C -0.083 4.083 5 N -0.122 5.122 6 C -0.075 4.075 7 C -0.187 4.187 8 C 0.380 3.620 9 O -0.394 6.394 10 N -0.332 5.332 11 C -0.014 4.014 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.105 4.105 15 H 0.091 0.909 16 C -0.112 4.112 17 H 0.090 0.910 18 C -0.179 4.179 19 C 0.027 3.973 20 N -0.332 5.332 21 C -0.350 4.350 22 H 0.094 0.906 23 C -0.208 4.208 24 N -0.570 5.570 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.020 3.980 30 C -0.005 4.005 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.122 0.878 47 H 0.028 0.972 48 H 0.062 0.938 49 H 0.036 0.964 50 H 0.038 0.962 51 H 0.089 0.911 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.350 24.568 -3.159 24.807 hybrid contribution 1.169 -1.505 -0.269 1.924 sum -0.181 23.063 -3.428 23.317 Atomic orbital electron populations 1.20117 0.87082 1.02790 1.02972 1.20842 0.96416 0.86767 1.03709 1.70020 1.00359 1.30053 1.20593 1.24985 0.97200 0.81618 1.04511 1.45318 1.05878 1.07751 1.53232 1.22203 0.84557 0.96567 1.04178 1.20670 0.84842 0.95020 1.18202 1.16967 0.78230 0.83292 0.83534 1.90869 1.47425 1.69531 1.31597 1.48129 1.68282 1.10234 1.06533 1.21751 0.98793 0.96435 0.84415 1.21931 0.97988 0.96568 1.00619 1.21618 1.02236 0.94355 0.97190 1.21505 0.98367 0.94711 0.95904 0.90853 1.22140 0.98913 0.91714 0.98431 0.91011 1.23073 0.99772 1.00029 0.95062 1.21909 0.89113 0.89818 0.96451 1.44534 1.32029 1.14138 1.42451 1.19109 1.05285 0.93621 1.16972 0.90567 1.24793 0.98805 0.98199 0.98987 1.69818 1.33637 1.26825 1.26727 0.86020 0.80323 0.82011 0.77277 1.20582 1.21761 1.21763 1.21257 0.94556 0.87684 0.94522 1.21830 0.97806 0.77476 1.03356 0.90659 0.90552 0.91406 0.77262 0.89764 0.88756 0.89339 0.90884 0.90288 0.90670 0.91849 0.90887 0.91627 0.92267 0.92425 0.87768 0.97155 0.93802 0.96442 0.96182 0.91108 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.24 36.00 0.37 -0.34 16 2 C 0.06 0.66 7.15 -82.51 -0.59 0.07 16 3 N -0.49 -5.65 11.20 -10.64 -0.12 -5.77 16 4 C 0.20 1.69 12.52 -90.57 -1.13 0.56 16 5 N -0.44 -3.97 3.16 -121.98 -0.39 -4.36 16 6 C 0.07 0.41 11.07 59.84 0.66 1.08 16 7 C -0.07 -0.83 4.60 -82.14 -0.38 -1.21 16 8 C 0.59 7.93 6.61 -12.82 -0.08 7.85 16 9 O -0.52 -8.94 16.54 5.21 0.09 -8.85 16 10 N -0.60 -6.79 2.97 -174.28 -0.52 -7.30 16 11 C 0.11 0.95 6.35 -3.71 -0.02 0.92 16 12 C -0.13 -1.09 6.08 -26.61 -0.16 -1.25 16 13 C -0.12 -1.21 5.03 -26.68 -0.13 -1.34 16 14 C -0.09 -1.09 1.74 -90.49 -0.16 -1.25 16 15 H 0.07 1.05 8.06 -51.93 -0.42 0.63 16 16 C -0.09 -1.51 2.49 -88.78 -0.22 -1.73 16 17 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 18 C -0.14 -2.64 5.49 -24.58 -0.13 -2.78 16 19 C 0.15 3.71 5.89 -2.53 -0.01 3.69 16 20 N -0.61 -15.50 3.39 -170.07 -0.58 -16.08 16 21 C -0.22 -6.19 10.27 -15.06 -0.15 -6.34 16 22 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 23 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 24 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 25 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 C 0.15 2.94 5.97 -3.06 -0.02 2.92 16 30 C 0.12 1.45 5.37 -3.71 -0.02 1.43 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.64 7.94 -51.93 -0.41 0.22 16 34 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.71 7.79 -51.93 -0.40 0.31 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.68 6.32 -51.93 -0.33 0.35 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.82 7.46 -51.93 -0.39 0.43 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.10 2.89 5.87 -51.93 -0.30 2.58 16 47 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.02 0.40 7.76 -51.93 -0.40 0.00 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 52 H 0.10 1.43 6.39 -51.93 -0.33 1.10 16 LS Contribution 406.29 15.07 6.12 6.12 Total: -1.00 -34.68 406.29 -11.02 -45.70 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.87 Total: -1.86 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -2.29 Total: 1.83 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: -1.04 Total: -60.03 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.68 -11.02 -45.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961192630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.006 kcal (2) G-P(sol) polarization free energy of solvation -34.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds