Wall clock time and date at job start Wed Apr 1 2020 04:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33326 * 126.10537 * 2 1 4 4 C 1.30857 * 109.68530 * 180.02562 * 3 2 1 5 5 N 1.34494 * 109.16507 * 359.76321 * 4 3 2 6 6 C 1.46496 * 126.47630 * 180.25476 * 5 4 3 7 7 C 1.36668 * 126.11140 * 180.02562 * 2 1 3 8 8 C 1.46762 * 126.84189 * 359.95657 * 7 2 1 9 9 O 1.21677 * 119.99911 * 279.72087 * 8 7 2 10 10 N 1.34773 * 120.00114 * 99.72138 * 8 7 2 11 11 C 1.46927 * 120.62841 * 354.78774 * 10 8 7 12 12 C 1.53193 * 108.77615 * 126.41059 * 11 10 8 13 13 C 1.53044 * 109.30989 * 54.63793 * 12 11 10 14 14 C 1.53046 * 109.53485 * 298.63033 * 13 12 11 15 15 H 1.08995 * 109.52419 * 301.39791 * 14 13 12 16 16 C 1.53004 * 109.49561 * 181.31750 * 14 13 12 17 17 H 1.09002 * 110.64066 * 303.30948 * 16 14 13 18 18 C 1.55157 * 110.71787 * 180.16418 * 16 14 13 19 19 C 1.54912 * 101.58037 * 206.13602 * 18 16 14 20 20 N 1.47426 * 104.83358 * 37.00933 * 19 18 16 21 21 C 1.36938 * 125.65233 * 155.90328 * 20 19 18 22 22 H 1.07997 * 120.00337 * 179.97438 * 21 20 19 23 23 C 1.38812 * 119.99385 * 359.97438 * 21 20 19 24 24 N 1.31617 * 120.00634 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99740 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47060 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47139 * 120.00005 * 25 23 21 28 28 H 1.48503 * 109.47198 * 239.99981 * 25 23 21 29 29 C 1.47027 * 108.70271 * 335.87380 * 20 19 18 30 30 C 1.46922 * 120.63181 * 174.80789 * 10 8 7 31 31 H 1.09003 * 109.47053 * 269.99321 * 1 2 3 32 32 H 1.08998 * 109.47494 * 29.99655 * 1 2 3 33 33 H 1.09004 * 109.46935 * 149.99801 * 1 2 3 34 34 H 1.08001 * 125.41621 * 180.02562 * 4 3 2 35 35 H 1.09003 * 109.47158 * 275.13591 * 6 5 4 36 36 H 1.09000 * 109.46872 * 35.13178 * 6 5 4 37 37 H 1.08994 * 109.47383 * 155.14047 * 6 5 4 38 38 H 1.08999 * 109.58993 * 246.19791 * 11 10 8 39 39 H 1.09004 * 109.58887 * 6.62441 * 11 10 8 40 40 H 1.09001 * 109.49868 * 174.58348 * 12 11 10 41 41 H 1.08996 * 109.50221 * 294.68402 * 12 11 10 42 42 H 1.09004 * 109.45813 * 178.61912 * 13 12 11 43 43 H 1.08996 * 109.46652 * 58.65319 * 13 12 11 44 44 H 1.09001 * 111.00423 * 324.21002 * 18 16 14 45 45 H 1.09000 * 111.00294 * 88.02734 * 18 16 14 46 46 H 1.08997 * 110.36771 * 155.85042 * 19 18 16 47 47 H 1.08998 * 110.36938 * 278.17252 * 19 18 16 48 48 H 0.96997 * 120.00645 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.87920 * 241.64044 * 29 20 19 50 50 H 1.08998 * 109.88604 * 120.47267 * 29 20 19 51 51 H 1.09003 * 109.58773 * 113.80517 * 30 10 8 52 52 H 1.08992 * 109.58880 * 353.37527 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6122 -0.6361 0.0043 6 6 4.8306 -1.4496 0.0107 7 6 2.3124 -1.1041 -0.0005 8 6 1.8822 -2.5072 -0.0002 9 8 1.5344 -3.0367 1.0386 10 7 1.8724 -3.2093 -1.1506 11 6 2.1796 -2.5547 -2.4297 12 6 3.2998 -3.3340 -3.1258 13 6 2.8902 -4.8031 -3.2540 14 6 2.6810 -5.3995 -1.8601 15 1 3.6010 -5.3077 -1.2828 16 6 2.3037 -6.8767 -1.9882 17 1 1.4166 -6.9941 -2.6106 18 6 2.0806 -7.5095 -0.5892 19 6 2.3973 -9.0001 -0.8680 20 7 3.5132 -8.9751 -1.8312 21 6 4.4254 -9.9784 -2.0221 22 1 5.2091 -9.8632 -2.7561 23 6 4.3425 -11.1435 -1.2721 24 7 3.3877 -11.2838 -0.3772 25 14 5.5864 -12.5126 -1.5330 26 1 6.5503 -12.1110 -2.5888 27 1 6.3172 -12.7656 -0.2653 28 1 4.8803 -13.7497 -1.9527 29 6 3.4840 -7.6947 -2.5533 30 6 1.5538 -4.6436 -1.1496 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5139 34 1 4.3970 1.3746 -0.0003 35 1 5.1868 -1.5784 -1.0114 36 1 5.5977 -0.9503 0.6026 37 1 4.6138 -2.4252 0.4455 38 1 1.2908 -2.5503 -3.0607 39 1 2.5057 -1.5308 -2.2471 40 1 3.4713 -2.9164 -4.1179 41 1 4.2140 -3.2613 -2.5369 42 1 3.6752 -5.3551 -3.7710 43 1 1.9626 -4.8734 -3.8220 44 1 2.7727 -7.0933 0.1428 45 1 1.0481 -7.3832 -0.2635 46 1 2.7005 -9.5018 0.0509 47 1 1.5307 -9.4969 -1.3043 48 1 3.3300 -12.0978 0.1471 49 1 3.3351 -7.8732 -3.6183 50 1 4.4184 -7.1570 -2.3925 51 1 0.6140 -4.8096 -1.6763 52 1 1.4671 -4.9979 -0.1225 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961192630.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:15 Heat of formation + Delta-G solvation = 27.462836 kcal Electronic energy + Delta-G solvation = -31696.893956 eV Core-core repulsion = 27696.956716 eV Total energy + Delta-G solvation = -3999.937240 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.29506 -41.16432 -39.62843 -38.04842 -35.47008 -35.23226 -33.72628 -32.69472 -32.19819 -30.68308 -29.63150 -28.70403 -27.18577 -26.66220 -26.18411 -24.07018 -23.55523 -22.04451 -21.72823 -21.39782 -20.74383 -19.95509 -18.89580 -18.55627 -17.72392 -17.10331 -16.77062 -16.56869 -16.45881 -16.15689 -15.65120 -15.40445 -15.21374 -15.13767 -14.63848 -14.49133 -14.36715 -14.15119 -14.02913 -13.88277 -13.65687 -13.58303 -13.41242 -13.31988 -13.25448 -13.12116 -12.87440 -12.76918 -12.49740 -12.12691 -12.10581 -11.96237 -11.82383 -11.72558 -11.62813 -11.37576 -11.32241 -11.02364 -10.92872 -10.75189 -10.59618 -9.77604 -9.42741 -8.88142 -7.77803 -5.22324 0.63566 1.08367 1.44904 1.46107 1.56413 1.69754 1.95900 2.10747 2.48818 3.31115 3.32432 3.59081 3.62612 3.68325 3.77134 3.80087 3.88128 3.99144 4.10546 4.14903 4.21170 4.26532 4.30766 4.34798 4.38532 4.53569 4.55100 4.59039 4.70218 4.72011 4.73914 4.80230 4.82133 4.86147 4.89011 4.93260 4.98094 5.06499 5.11465 5.14479 5.17599 5.31371 5.35773 5.44712 5.45802 5.52323 5.53293 5.65467 5.82164 6.12122 6.20304 6.30861 6.88864 6.94514 7.10332 7.79178 8.43414 9.24348 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002382 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.666893 B =11753.974243 C =11875.054216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.043 3.957 3 N -0.523 5.523 4 C 0.216 3.784 5 N -0.438 5.438 6 C 0.064 3.936 7 C -0.092 4.092 8 C 0.597 3.403 9 O -0.571 6.571 10 N -0.591 5.591 11 C 0.109 3.891 12 C -0.124 4.124 13 C -0.113 4.113 14 C -0.072 4.072 15 H 0.058 0.942 16 C -0.076 4.076 17 H 0.086 0.914 18 C -0.126 4.126 19 C 0.153 3.847 20 N -0.629 5.629 21 C -0.236 4.236 22 H 0.082 0.918 23 C -0.072 4.072 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.264 1.264 27 H -0.292 1.292 28 H -0.293 1.293 29 C 0.143 3.857 30 C 0.120 3.880 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.066 0.934 47 H -0.014 1.014 48 H 0.246 0.754 49 H 0.024 0.976 50 H 0.025 0.975 51 H 0.087 0.913 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 26.864 -5.916 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.090 4.090 3 N -0.242 5.242 4 C -0.066 4.066 5 N -0.120 5.120 6 C -0.077 4.077 7 C -0.209 4.209 8 C 0.383 3.617 9 O -0.449 6.449 10 N -0.323 5.323 11 C -0.013 4.013 12 C -0.162 4.162 13 C -0.151 4.151 14 C -0.091 4.091 15 H 0.076 0.924 16 C -0.095 4.095 17 H 0.104 0.896 18 C -0.165 4.165 19 C 0.028 3.972 20 N -0.356 5.356 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.264 4.264 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.189 1.189 27 H -0.219 1.219 28 H -0.220 1.220 29 C 0.018 3.982 30 C -0.002 4.002 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.270 0.730 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.070 0.930 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.004 0.996 48 H 0.055 0.945 49 H 0.042 0.958 50 H 0.043 0.957 51 H 0.105 0.895 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.055 27.075 -5.335 27.596 hybrid contribution 0.809 -2.239 0.374 2.410 sum 0.754 24.836 -4.961 25.338 Atomic orbital electron populations 1.20136 0.86595 1.03355 1.02810 1.21127 0.97162 0.87043 1.03632 1.70032 1.01660 1.30270 1.22284 1.25838 0.97530 0.81720 1.01548 1.45489 1.05646 1.08214 1.52669 1.22418 0.84010 0.95465 1.05856 1.20443 0.86295 0.93946 1.20218 1.17209 0.77411 0.83897 0.83177 1.90837 1.49857 1.70796 1.33425 1.48164 1.67239 1.09654 1.07213 1.21949 0.99777 0.96489 0.83066 1.21889 0.97520 0.94811 1.01988 1.21596 1.02855 0.95610 0.95016 1.21320 0.97664 0.92397 0.97744 0.92381 1.22045 0.97954 0.93271 0.96233 0.89550 1.22879 1.00716 0.96149 0.96721 1.21681 0.88018 0.92974 0.94492 1.44872 1.31761 1.15503 1.43423 1.19507 1.05774 0.94454 1.16753 0.90027 1.25673 1.00878 1.00726 0.99108 1.70089 1.35362 1.27031 1.27653 0.84977 0.78179 0.78700 0.77291 1.18860 1.21932 1.21974 1.21443 0.96329 0.86012 0.94412 1.21678 0.98282 0.78240 1.01964 0.91185 0.89391 0.91368 0.73041 0.87741 0.85853 0.91743 0.89281 0.89773 0.88006 0.91899 0.91358 0.90310 0.93003 0.90404 0.91590 0.99568 0.94454 0.95810 0.95744 0.89533 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.24 71.24 0.73 -0.64 16 2 C 0.04 0.98 7.15 41.96 0.30 1.28 16 3 N -0.52 -11.07 11.20 -187.59 -2.10 -13.17 16 4 C 0.22 3.04 12.52 180.33 2.26 5.30 16 5 N -0.44 -6.97 3.16 -539.83 -1.71 -8.68 16 6 C 0.06 0.63 11.07 127.77 1.41 2.04 16 7 C -0.09 -2.08 4.60 40.01 0.18 -1.89 16 8 C 0.60 15.81 6.61 86.47 0.57 16.38 16 9 O -0.57 -20.32 16.54 -4.28 -0.07 -20.39 16 10 N -0.59 -12.61 2.97 -823.53 -2.45 -15.06 16 11 C 0.11 1.56 6.35 86.36 0.55 2.11 16 12 C -0.12 -1.58 6.08 30.67 0.19 -1.39 16 13 C -0.11 -2.00 5.03 30.62 0.15 -1.84 16 14 C -0.07 -1.72 1.74 -10.71 -0.02 -1.74 16 15 H 0.06 1.60 8.06 -2.39 -0.02 1.58 16 16 C -0.08 -2.38 2.49 -9.60 -0.02 -2.41 16 17 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 18 C -0.13 -4.79 5.49 31.99 0.18 -4.62 16 19 C 0.15 7.79 5.89 86.86 0.51 8.30 16 20 N -0.63 -32.81 3.39 -691.97 -2.35 -35.16 16 21 C -0.24 -13.36 10.27 84.03 0.86 -12.50 16 22 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 23 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 24 N -0.95 -58.07 10.09 21.65 0.22 -57.85 16 25 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 29 C 0.14 5.67 5.97 86.73 0.52 6.19 16 30 C 0.12 2.86 5.37 86.36 0.46 3.32 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.26 7.94 -2.39 -0.02 1.24 16 34 H 0.25 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.06 0.99 7.79 -2.39 -0.02 0.97 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.08 1.20 6.32 -2.38 -0.02 1.18 16 40 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.07 1.31 7.46 -2.38 -0.02 1.30 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.05 2.04 8.05 -2.39 -0.02 2.02 16 45 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.07 3.87 5.87 -2.39 -0.01 3.85 16 47 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 49 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.02 0.96 7.76 -2.39 -0.02 0.94 16 51 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 52 H 0.07 2.12 6.39 -2.39 -0.02 2.10 16 Total: -1.00 -79.61 406.29 3.76 -75.84 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.89 Total: 12.10 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 9.30 Total: 14.22 kcal Atomic # 7 Polarization: -121.54 SS G_CDS: -8.39 Total: -129.92 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.07 Total: -20.39 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -79.61 3.76 -75.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961192630.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.305 kcal (2) G-P(sol) polarization free energy of solvation -79.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds