Wall clock time and date at job start Wed Apr 1 2020 04:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34666 * 126.59208 * 2 1 4 4 N 1.34134 * 108.01954 * 180.02562 * 3 2 1 5 5 C 1.30494 * 109.25687 * 359.71829 * 4 3 2 6 6 N 1.35039 * 108.69934 * 0.44497 * 5 4 3 7 7 C 1.46499 * 126.39702 * 179.81986 * 6 5 4 8 8 C 1.50698 * 109.47742 * 264.69118 * 7 6 5 9 9 O 1.21287 * 119.99857 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00285 * 179.97438 * 8 7 6 11 11 C 1.46919 * 120.63242 * 0.02562 * 10 8 7 12 12 C 1.53195 * 108.77845 * 233.58225 * 11 10 8 13 13 C 1.53039 * 109.31257 * 305.36660 * 12 11 10 14 14 C 1.53046 * 109.52798 * 61.36716 * 13 12 11 15 15 H 1.08998 * 109.49692 * 58.57850 * 14 13 12 16 16 C 1.53001 * 109.49566 * 178.67884 * 14 13 12 17 17 H 1.08996 * 110.88776 * 56.12112 * 16 14 13 18 18 C 1.55156 * 111.00294 * 180.02562 * 16 14 13 19 19 C 1.54323 * 102.94537 * 153.57432 * 18 16 14 20 20 N 1.47027 * 107.26855 * 337.80525 * 19 18 16 21 21 C 1.36934 * 125.64653 * 178.91641 * 20 19 18 22 22 H 1.08000 * 119.99643 * 180.02562 * 21 20 19 23 23 C 1.38810 * 120.00041 * 0.02750 * 21 20 19 24 24 N 1.31622 * 120.00192 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00162 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47031 * 59.99580 * 25 23 21 27 27 H 1.48498 * 109.47607 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46888 * 300.00145 * 25 23 21 29 29 C 1.47425 * 108.70055 * 358.94037 * 20 19 18 30 30 C 1.46931 * 120.63145 * 179.97438 * 10 8 7 31 31 H 1.09003 * 109.47096 * 269.96362 * 1 2 3 32 32 H 1.08995 * 109.46654 * 29.96291 * 1 2 3 33 33 H 1.09001 * 109.47137 * 149.96190 * 1 2 3 34 34 H 1.07999 * 125.99221 * 0.02562 * 3 2 1 35 35 H 1.07999 * 125.65304 * 180.29308 * 5 4 3 36 36 H 1.09001 * 109.46919 * 144.69437 * 7 6 5 37 37 H 1.09000 * 109.47356 * 24.69751 * 7 6 5 38 38 H 1.08997 * 109.59005 * 113.79701 * 11 10 8 39 39 H 1.09002 * 109.70256 * 353.43937 * 11 10 8 40 40 H 1.08997 * 109.50026 * 185.40903 * 12 11 10 41 41 H 1.09006 * 109.51801 * 65.33221 * 12 11 10 42 42 H 1.09002 * 109.46050 * 181.38302 * 13 12 11 43 43 H 1.09004 * 109.46034 * 301.35518 * 13 12 11 44 44 H 1.09004 * 110.71822 * 271.93634 * 18 16 14 45 45 H 1.09000 * 110.72052 * 35.03012 * 18 16 14 46 46 H 1.08998 * 109.87716 * 97.22011 * 19 18 16 47 47 H 1.08995 * 109.88474 * 218.23318 * 19 18 16 48 48 H 0.96997 * 119.99958 * 179.97438 * 24 23 21 49 49 H 1.08992 * 110.36562 * 265.28514 * 29 20 19 50 50 H 1.09004 * 110.36279 * 142.96946 * 29 20 19 51 51 H 1.08998 * 109.58959 * 246.20295 * 30 10 8 52 52 H 1.09003 * 109.58181 * 6.48778 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5812 0.6540 -0.0006 5 6 3.5968 -0.6508 0.0051 6 7 2.3230 -1.0990 -0.0004 7 6 1.8944 -2.4999 -0.0006 8 6 1.6285 -2.9439 -1.4159 9 8 1.7823 -2.1667 -2.3343 10 7 1.2207 -4.2047 -1.6614 11 6 1.0304 -5.1578 -0.5596 12 6 1.8417 -6.4230 -0.8563 13 6 1.4480 -6.9658 -2.2319 14 6 1.7699 -5.9228 -3.3047 15 1 2.8338 -5.6875 -3.2757 16 6 1.4065 -6.4789 -4.6829 17 1 0.3607 -6.7844 -4.7153 18 6 1.7200 -5.4478 -5.7991 19 6 1.9594 -6.3391 -7.0359 20 7 2.3200 -7.6776 -6.5460 21 6 2.5913 -8.7677 -7.3291 22 1 2.8472 -9.7115 -6.8708 23 6 2.5374 -8.6596 -8.7120 24 7 2.2251 -7.5094 -9.2705 25 14 2.9083 -10.1464 -9.7803 26 1 1.9456 -11.2330 -9.4676 27 1 2.7828 -9.7712 -11.2116 28 1 4.2907 -10.6171 -9.5108 29 6 2.3404 -7.6519 -5.0722 30 6 0.9569 -4.6520 -3.0358 31 1 -0.3633 -0.0007 1.0277 32 1 -0.3632 0.8903 -0.5132 33 1 -0.3633 -0.8897 -0.5144 34 1 1.9865 2.1117 0.0004 35 1 4.4818 -1.2698 0.0106 36 1 0.9833 -2.6012 0.5891 37 1 2.6788 -3.1200 0.4334 38 1 -0.0260 -5.4127 -0.4752 39 1 1.3748 -4.7135 0.3743 40 1 1.6341 -7.1752 -0.0953 41 1 2.9051 -6.1834 -0.8504 42 1 2.0061 -7.8798 -2.4350 43 1 0.3797 -7.1821 -2.2448 44 1 0.8705 -4.7841 -5.9606 45 1 2.6142 -4.8746 -5.5544 46 1 1.0497 -6.3957 -7.6336 47 1 2.7722 -5.9300 -7.6359 48 1 2.1878 -7.4338 -10.2368 49 1 3.3518 -7.4679 -4.7100 50 1 1.9579 -8.5906 -4.6711 51 1 -0.1055 -4.8658 -3.1531 52 1 1.2522 -3.8715 -3.7371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961199066.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:19 Heat of formation + Delta-G solvation = 27.823934 kcal Electronic energy + Delta-G solvation = -31012.937439 eV Core-core repulsion = 27013.015858 eV Total energy + Delta-G solvation = -3999.921582 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.10487 -41.30281 -39.69844 -38.04674 -35.37033 -34.92851 -33.66506 -32.83732 -32.52935 -30.74343 -29.62235 -28.29576 -27.31480 -26.63204 -25.88167 -23.95418 -22.62312 -22.33671 -21.68573 -21.20523 -20.81373 -19.91592 -18.88035 -18.54506 -18.06029 -16.96592 -16.74426 -16.66234 -16.32227 -15.85198 -15.69681 -15.41280 -15.28721 -15.01121 -14.69546 -14.43067 -14.20682 -14.11655 -13.96991 -13.91778 -13.82548 -13.60570 -13.57327 -13.31323 -13.22731 -13.17157 -12.85946 -12.72683 -12.31732 -12.14180 -12.08644 -12.02108 -11.76284 -11.71014 -11.49684 -11.43072 -11.24039 -11.02948 -10.93590 -10.72607 -10.39967 -9.67882 -9.22097 -8.92232 -7.86584 -5.22920 0.96553 1.43049 1.43502 1.47306 1.53679 1.67150 2.07948 2.22837 2.48252 3.31179 3.33537 3.57518 3.69403 3.74847 3.79675 3.83117 3.87688 3.91679 4.05680 4.10984 4.16877 4.23068 4.26982 4.35170 4.42805 4.51812 4.53617 4.62114 4.69504 4.74413 4.79147 4.84584 4.85478 4.89779 4.91949 4.95907 5.03129 5.04005 5.15099 5.19608 5.36620 5.41248 5.42293 5.43410 5.50278 5.55798 5.63129 5.74122 5.82779 6.17676 6.18701 6.36588 7.02588 7.07620 7.12605 7.76391 8.41706 9.23982 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.002150 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.548034 B =13019.163099 C =13733.375048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.016 4.016 3 C -0.063 4.063 4 N -0.534 5.534 5 C 0.179 3.821 6 N -0.445 5.445 7 C 0.089 3.911 8 C 0.491 3.509 9 O -0.579 6.579 10 N -0.601 5.601 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.073 4.073 15 H 0.058 0.942 16 C -0.076 4.076 17 H 0.080 0.920 18 C -0.126 4.126 19 C 0.186 3.814 20 N -0.630 5.630 21 C -0.243 4.243 22 H 0.085 0.915 23 C -0.072 4.072 24 N -0.955 5.955 25 Si 0.982 3.018 26 H -0.273 1.273 27 H -0.296 1.296 28 H -0.276 1.276 29 C 0.142 3.858 30 C 0.122 3.878 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.176 0.824 35 H 0.227 0.773 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.010 0.990 47 H -0.003 1.003 48 H 0.246 0.754 49 H 0.016 0.984 50 H 0.047 0.953 51 H 0.080 0.920 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 6.965 29.547 31.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.130 4.130 3 C -0.209 4.209 4 N -0.252 5.252 5 C -0.103 4.103 6 N -0.128 5.128 7 C -0.036 4.036 8 C 0.279 3.721 9 O -0.459 6.459 10 N -0.333 5.333 11 C -0.023 4.023 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.092 4.092 15 H 0.076 0.924 16 C -0.096 4.096 17 H 0.098 0.902 18 C -0.165 4.165 19 C 0.061 3.939 20 N -0.357 5.357 21 C -0.372 4.372 22 H 0.103 0.897 23 C -0.265 4.265 24 N -0.605 5.605 25 Si 0.809 3.191 26 H -0.198 1.198 27 H -0.222 1.222 28 H -0.202 1.202 29 C 0.017 3.983 30 C -0.001 4.001 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.079 0.921 34 H 0.193 0.807 35 H 0.243 0.757 36 H 0.173 0.827 37 H 0.180 0.820 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.015 0.985 48 H 0.055 0.945 49 H 0.034 0.966 50 H 0.066 0.934 51 H 0.098 0.902 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.882 7.686 28.870 30.450 hybrid contribution -0.075 -1.028 -1.915 2.174 sum -5.957 6.658 26.956 28.398 Atomic orbital electron populations 1.20284 0.85219 1.03634 1.03890 1.21684 0.95863 0.86607 1.08895 1.22350 0.88518 0.99581 1.10446 1.70192 1.23643 1.10440 1.20923 1.25397 0.88235 0.91679 1.05030 1.45062 1.07023 1.06403 1.54330 1.22063 1.07335 0.80190 0.94018 1.21359 0.76742 0.81965 0.92081 1.90805 1.53285 1.54072 1.47692 1.48213 1.65733 1.10816 1.08569 1.22214 1.02209 0.89106 0.88776 1.21921 1.00282 0.97585 0.96975 1.21605 1.02395 0.97376 0.93976 1.21296 0.99328 0.95110 0.93514 0.92373 1.22204 0.99470 0.94608 0.93329 0.90155 1.22747 1.00679 0.97290 0.95742 1.20848 0.96323 0.84134 0.92622 1.44841 1.81525 1.07581 1.01714 1.19470 1.39291 0.89876 0.88544 0.89677 1.25742 1.02520 1.00136 0.98064 1.70217 1.55936 1.25124 1.09172 0.85105 0.78335 0.78481 0.77140 1.19850 1.22246 1.20241 1.21708 0.96212 0.97110 0.83269 1.21519 0.99820 0.95830 0.82906 0.88420 0.89607 0.92143 0.80705 0.75658 0.82707 0.82034 0.88893 0.86313 0.87697 0.91825 0.91873 0.90638 0.90886 0.92618 0.97223 0.98515 0.94506 0.96578 0.93423 0.90198 0.91879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.08 71.24 0.72 -0.15 16 2 C -0.02 -0.30 6.95 40.95 0.28 -0.02 16 3 C -0.06 -1.48 11.79 83.52 0.98 -0.49 16 4 N -0.53 -14.32 11.25 -200.32 -2.25 -16.57 16 5 C 0.18 3.70 12.56 180.27 2.26 5.97 16 6 N -0.44 -7.72 2.24 -518.63 -1.16 -8.88 16 7 C 0.09 0.80 4.62 85.63 0.40 1.19 16 8 C 0.49 9.04 7.77 87.66 0.68 9.72 16 9 O -0.58 -17.97 15.84 -3.05 -0.05 -18.02 16 10 N -0.60 -9.00 2.97 -818.83 -2.43 -11.43 16 11 C 0.10 0.53 6.34 86.36 0.55 1.07 16 12 C -0.13 -1.06 6.08 30.67 0.19 -0.87 16 13 C -0.12 -1.83 5.05 30.62 0.15 -1.68 16 14 C -0.07 -1.67 1.86 -10.70 -0.02 -1.69 16 15 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 16 C -0.08 -2.43 2.56 -9.40 -0.02 -2.46 16 17 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 18 C -0.13 -4.88 5.41 31.78 0.17 -4.71 16 19 C 0.19 9.72 5.37 86.73 0.47 10.18 16 20 N -0.63 -33.34 3.39 -692.00 -2.35 -35.69 16 21 C -0.24 -13.92 10.28 84.03 0.86 -13.05 16 22 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 23 C -0.07 -4.23 5.49 84.86 0.47 -3.76 16 24 N -0.96 -59.78 10.31 21.65 0.22 -59.56 16 25 Si 0.98 46.62 29.55 68.60 2.03 48.65 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 29 C 0.14 5.65 5.94 86.85 0.52 6.17 16 30 C 0.12 2.63 5.39 86.37 0.47 3.10 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.76 7.96 -2.39 -0.02 0.74 16 34 H 0.18 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.23 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.16 0.28 7.82 -2.39 -0.02 0.26 16 37 H 0.16 0.24 7.68 -2.39 -0.02 0.22 16 38 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.12 -0.24 5.95 -2.39 -0.01 -0.25 16 40 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.06 1.15 7.45 -2.39 -0.02 1.13 16 43 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 2.59 8.14 -2.38 -0.02 2.57 16 45 H 0.06 2.14 8.04 -2.39 -0.02 2.12 16 46 H 0.01 0.56 7.38 -2.39 -0.02 0.54 16 47 H 0.00 -0.20 7.50 -2.39 -0.02 -0.22 16 48 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 50 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 51 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 52 H 0.06 1.82 6.39 -2.39 -0.02 1.80 16 Total: -1.00 -88.07 406.23 4.02 -84.05 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.89 Total: 8.92 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 9.12 Total: 8.53 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -7.97 Total: -132.14 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.05 Total: -18.02 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -88.07 4.02 -84.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961199066.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.875 kcal (2) G-P(sol) polarization free energy of solvation -88.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds