Wall clock time and date at job start Wed Apr 1 2020 03:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30437 * 125.98791 * 2 1 4 4 N 1.39942 * 108.89769 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.75324 * 180.26045 * 4 3 2 6 6 C 1.34256 * 108.48793 * 0.02562 * 4 3 2 7 7 C 1.50701 * 126.29083 * 180.02562 * 6 4 3 8 8 C 1.38041 * 107.41807 * 359.97438 * 6 4 3 9 9 C 1.47437 * 126.41376 * 180.02562 * 8 6 4 10 10 O 1.21601 * 120.00087 * 90.00241 * 9 8 6 11 11 N 1.34777 * 119.99479 * 270.00078 * 9 8 6 12 12 C 1.46921 * 120.63468 * 359.71808 * 11 9 8 13 13 C 1.53627 * 108.54300 * 126.36754 * 12 11 9 14 14 C 1.53044 * 109.24065 * 54.85825 * 13 12 11 15 15 C 1.53042 * 109.53903 * 298.51303 * 14 13 12 16 16 H 1.09000 * 109.51969 * 301.39878 * 15 14 13 17 17 C 1.53001 * 109.49677 * 181.31577 * 15 14 13 18 18 H 1.08994 * 110.63862 * 303.30113 * 17 15 14 19 19 C 1.55152 * 110.71611 * 180.15711 * 17 15 14 20 20 C 1.54909 * 101.58340 * 206.13386 * 19 17 15 21 21 N 1.47431 * 104.83112 * 37.01364 * 20 19 17 22 22 C 1.36931 * 125.64891 * 155.90896 * 21 20 19 23 23 H 1.07995 * 120.00424 * 353.89593 * 22 21 20 24 24 C 1.38813 * 119.99670 * 173.90156 * 22 21 20 25 25 N 1.31615 * 120.00182 * 6.82470 * 24 22 21 26 26 Si 1.86804 * 119.99884 * 186.82973 * 24 22 21 27 27 H 1.48497 * 109.47116 * 94.98224 * 26 24 22 28 28 H 1.48502 * 109.47182 * 214.98643 * 26 24 22 29 29 H 1.48498 * 109.46963 * 334.98332 * 26 24 22 30 30 C 1.47026 * 108.69971 * 335.86907 * 21 20 19 31 31 C 1.46926 * 120.62839 * 179.97438 * 11 9 8 32 32 H 1.09006 * 109.46751 * 269.97510 * 1 2 3 33 33 H 1.08995 * 109.47271 * 29.96986 * 1 2 3 34 34 H 1.08997 * 109.47298 * 149.97292 * 1 2 3 35 35 H 1.08995 * 109.47441 * 90.01635 * 7 6 4 36 36 H 1.09004 * 109.47173 * 210.02379 * 7 6 4 37 37 H 1.09007 * 109.46799 * 330.02189 * 7 6 4 38 38 H 1.08999 * 109.58894 * 246.20053 * 12 11 9 39 39 H 1.09004 * 109.58649 * 6.62810 * 12 11 9 40 40 H 1.08994 * 109.63571 * 294.87068 * 13 12 11 41 41 H 1.09001 * 109.45972 * 174.73872 * 13 12 11 42 42 H 1.09000 * 109.46155 * 178.48610 * 14 13 12 43 43 H 1.09009 * 109.44706 * 58.52473 * 14 13 12 44 44 H 1.09001 * 111.00901 * 324.20791 * 19 17 15 45 45 H 1.08998 * 111.00354 * 88.02621 * 19 17 15 46 46 H 1.08997 * 110.36779 * 155.84782 * 20 19 17 47 47 H 1.09001 * 110.36654 * 278.17384 * 20 19 17 48 48 H 0.97006 * 119.99984 * 179.97438 * 25 24 22 49 49 H 1.08991 * 109.88618 * 241.64389 * 30 21 20 50 50 H 1.09001 * 109.87766 * 120.47754 * 30 21 20 51 51 H 1.09006 * 109.58352 * 353.37623 * 31 11 9 52 52 H 1.09001 * 109.58786 * 113.79552 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0554 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 0.0029 6 6 3.6439 -0.6980 -0.0015 7 6 4.8800 -1.5601 -0.0019 8 6 2.3373 -1.1432 -0.0009 9 6 1.8915 -2.5486 -0.0011 10 8 1.7082 -3.1284 1.0520 11 7 1.6872 -3.1905 -1.1684 12 6 1.8984 -2.5015 -2.4487 13 6 2.8624 -3.3402 -3.3016 14 6 2.3104 -4.7612 -3.4367 15 6 2.2089 -5.4046 -2.0518 16 1 3.1933 -5.4194 -1.5840 17 6 1.6879 -6.8364 -2.1909 18 1 0.7286 -6.8476 -2.7081 19 6 1.5701 -7.5151 -0.8007 20 6 1.7174 -9.0119 -1.1717 21 7 2.7136 -9.0351 -2.2583 22 6 3.5038 -10.1018 -2.5938 23 1 3.4968 -10.9924 -1.9829 24 6 4.3140 -10.0385 -3.7192 25 7 4.4258 -8.9099 -4.3870 26 14 5.2454 -11.5553 -4.2860 27 1 4.4567 -12.2597 -5.3286 28 1 6.5581 -11.1486 -4.8487 29 1 5.4619 -12.4635 -3.1312 30 6 2.7174 -7.7234 -2.9224 31 6 1.2435 -4.5911 -1.1848 32 1 -0.3633 -0.0004 1.0277 33 1 -0.3633 0.8902 -0.5133 34 1 -0.3634 -0.8897 -0.5142 35 1 5.1776 -1.7689 1.0257 36 1 4.6691 -2.4974 -0.5168 37 1 5.6873 -1.0373 -0.5149 38 1 0.9459 -2.3943 -2.9676 39 1 2.3307 -1.5174 -2.2671 40 1 3.8407 -3.3740 -2.8224 41 1 2.9569 -2.8911 -4.2904 42 1 2.9781 -5.3521 -4.0636 43 1 1.3213 -4.7244 -3.8934 44 1 2.3760 -7.1953 -0.1401 45 1 0.5972 -7.3175 -0.3506 46 1 2.0772 -9.5815 -0.3150 47 1 0.7654 -9.4115 -1.5213 48 1 4.9923 -8.8656 -5.1732 49 1 2.4324 -7.8365 -3.9683 50 1 3.7087 -7.2754 -2.8525 51 1 1.2435 -4.9863 -0.1688 52 1 0.2385 -4.6512 -1.6024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961249903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:24 Heat of formation + Delta-G solvation = 47.163938 kcal Electronic energy + Delta-G solvation = -31773.588530 eV Core-core repulsion = 27774.505594 eV Total energy + Delta-G solvation = -3999.082936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.77289 -39.84492 -38.04460 -36.52532 -33.83657 -33.49125 -32.30413 -31.87260 -31.11191 -28.73175 -28.37795 -27.73002 -27.15235 -25.35931 -24.44350 -22.77446 -22.26732 -20.59541 -20.24992 -19.95438 -19.24168 -18.75497 -17.79558 -16.84301 -16.69029 -15.92006 -15.36348 -15.28636 -14.80391 -14.29696 -14.21174 -14.04771 -13.99533 -13.72525 -13.64066 -13.50387 -13.32663 -12.90314 -12.77909 -12.73806 -12.70331 -12.31724 -12.25616 -12.18920 -11.71661 -11.51247 -11.23881 -11.11087 -11.02942 -10.82792 -10.78660 -10.67735 -10.43381 -10.06853 -9.95259 -9.78879 -9.72768 -9.67384 -9.64364 -9.52733 -8.79809 -8.57558 -8.48304 -6.75833 -5.68843 -2.99530 1.42312 2.18252 2.40543 2.58318 3.14314 3.41840 3.47427 3.48811 4.19152 4.32474 4.53838 4.63508 4.74698 4.83858 4.97598 5.03140 5.08873 5.14171 5.17778 5.32973 5.35103 5.42999 5.43508 5.51264 5.52281 5.58648 5.60606 5.62312 5.69332 5.73697 5.81783 5.91412 5.93860 6.02941 6.14890 6.17329 6.18632 6.23962 6.39041 6.48728 6.59405 6.62300 6.72829 6.75032 6.81530 6.86038 7.07818 7.30437 7.44451 7.61319 7.69495 7.86732 8.22575 8.31162 9.27266 9.87920 10.55768 11.43469 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.002570 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.892178 B =10891.199991 C =11342.526972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 N -0.296 5.296 4 N -0.464 5.464 5 H 0.441 0.559 6 C 0.132 3.868 7 C -0.101 4.101 8 C -0.276 4.276 9 C 0.597 3.403 10 O -0.537 6.537 11 N -0.601 5.601 12 C 0.111 3.889 13 C -0.133 4.133 14 C -0.116 4.116 15 C -0.081 4.081 16 H 0.073 0.927 17 C -0.109 4.109 18 H 0.066 0.934 19 C -0.128 4.128 20 C 0.133 3.867 21 N -0.608 5.608 22 C -0.225 4.225 23 H 0.077 0.923 24 C -0.009 4.009 25 N -0.920 5.920 26 Si 0.908 3.092 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.190 3.810 31 C 0.116 3.884 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.017 0.983 48 H 0.250 0.750 49 H 0.042 0.958 50 H 0.042 0.958 51 H 0.093 0.907 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.305 20.937 4.975 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 N -0.119 5.119 4 N -0.170 5.170 5 H 0.286 0.714 6 C 0.000 4.000 7 C -0.160 4.160 8 C -0.291 4.291 9 C 0.383 3.617 10 O -0.413 6.413 11 N -0.333 5.333 12 C -0.012 4.012 13 C -0.171 4.171 14 C -0.154 4.154 15 C -0.100 4.100 16 H 0.091 0.909 17 C -0.128 4.128 18 H 0.084 0.916 19 C -0.167 4.167 20 C 0.006 3.994 21 N -0.335 5.335 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.207 1.207 30 C 0.065 3.935 31 C -0.006 4.006 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.035 0.965 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.061 0.939 51 H 0.112 0.888 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.238 21.828 5.379 22.877 hybrid contribution 1.052 -1.272 -0.480 1.719 sum -3.187 20.556 4.899 21.371 Atomic orbital electron populations 1.20258 0.86134 1.03575 1.03641 1.22312 0.96932 0.88845 0.97119 1.77074 0.86177 1.22138 1.26507 1.45964 1.07561 1.04722 1.58785 0.71440 1.21399 0.96222 0.84942 0.97437 1.20611 0.92082 0.98907 1.04376 1.19834 0.92129 0.94379 1.22739 1.17335 0.76618 0.84455 0.83275 1.90780 1.51682 1.67725 1.31117 1.48108 1.66617 1.12972 1.05605 1.21797 0.99627 0.95863 0.83914 1.21997 0.98945 0.96559 0.99585 1.21596 1.01655 0.94731 0.97383 1.21415 0.99142 0.94168 0.95304 0.90859 1.22459 1.00166 0.93174 0.97046 0.91584 1.22792 1.00242 0.97078 0.96554 1.21558 0.92525 0.93781 0.91491 1.44516 1.42290 1.11087 1.35581 1.19079 1.16766 0.92940 1.06536 0.90560 1.24788 1.00478 0.97266 0.97966 1.69974 1.42601 1.23635 1.20621 0.86147 0.78925 0.82394 0.78639 1.21710 1.21866 1.20706 1.21126 0.94731 0.83403 0.94244 1.21793 0.97273 0.79199 1.02321 0.89908 0.90321 0.90336 0.89225 0.89019 0.90272 0.91464 0.90264 0.91641 0.91008 0.90102 0.92133 0.91777 0.92341 0.94586 0.96548 0.93943 0.93986 0.93941 0.88847 0.91654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.28 36.01 0.37 -0.31 16 2 C 0.12 1.30 7.26 -82.02 -0.60 0.70 16 3 N -0.30 -3.28 12.63 33.89 0.43 -2.85 16 4 N -0.46 -4.02 7.29 33.86 0.25 -3.77 16 5 H 0.44 2.28 8.96 -182.72 -1.64 0.65 16 6 C 0.13 1.29 7.19 -81.60 -0.59 0.70 16 7 C -0.10 -0.77 10.25 36.01 0.37 -0.41 16 8 C -0.28 -3.30 3.86 -105.07 -0.41 -3.71 16 9 C 0.60 8.34 6.86 -12.51 -0.09 8.26 16 10 O -0.54 -9.49 16.52 5.28 0.09 -9.41 16 11 N -0.60 -7.47 2.97 -173.79 -0.52 -7.99 16 12 C 0.11 1.13 6.37 -3.49 -0.02 1.11 16 13 C -0.13 -1.43 6.10 -26.38 -0.16 -1.59 16 14 C -0.12 -1.56 5.03 -26.69 -0.13 -1.70 16 15 C -0.08 -1.21 1.74 -90.52 -0.16 -1.36 16 16 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 17 C -0.11 -1.93 2.49 -88.79 -0.22 -2.15 16 18 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.13 -2.27 5.49 -24.59 -0.13 -2.40 16 20 C 0.13 2.81 7.23 -2.53 -0.02 2.79 16 21 N -0.61 -15.68 3.39 -170.07 -0.58 -16.25 16 22 C -0.22 -6.33 10.26 -15.06 -0.15 -6.48 16 23 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 24 C -0.01 -0.25 5.48 -17.43 -0.10 -0.35 16 25 N -0.92 -26.67 10.36 55.49 0.58 -26.10 16 26 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 C 0.19 4.45 4.11 -3.06 -0.01 4.44 16 31 C 0.12 1.57 5.37 -3.73 -0.02 1.55 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.83 7.96 -51.93 -0.41 0.41 16 37 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.77 6.25 -51.93 -0.32 0.44 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.29 7.46 -51.93 -0.39 0.90 16 43 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.06 1.16 8.05 -51.93 -0.42 0.75 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.04 1.10 7.37 -51.93 -0.38 0.72 16 50 H 0.04 1.10 7.17 -51.93 -0.37 0.73 16 51 H 0.09 1.42 6.36 -51.93 -0.33 1.09 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 407.07 15.07 6.13 6.13 Total: -1.00 -34.23 407.07 -10.86 -45.09 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -10.14 Total: -1.07 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.07 Total: -0.92 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.16 Total: -56.96 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.23 -10.86 -45.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961249903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.251 kcal (2) G-P(sol) polarization free energy of solvation -34.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds