Wall clock time and date at job start Wed Apr 1 2020 03:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35372 * 126.38643 * 2 1 4 4 C 1.41500 * 105.50166 * 179.86736 * 3 2 1 5 5 C 1.47711 * 126.51759 * 180.15185 * 4 3 2 6 6 O 1.21571 * 120.00170 * 7.33881 * 5 4 3 7 7 N 1.34781 * 119.99771 * 187.34575 * 5 4 3 8 8 C 1.46923 * 120.62812 * 186.70609 * 7 5 4 9 9 C 1.52762 * 109.01019 * 233.58605 * 8 7 5 10 10 C 1.53042 * 109.37977 * 305.58473 * 9 8 7 11 11 C 1.52999 * 109.46245 * 181.25904 * 10 9 8 12 12 H 1.08996 * 109.49595 * 299.99969 * 11 10 9 13 13 C 1.53045 * 109.49315 * 60.09556 * 11 10 9 14 14 C 1.53039 * 109.53567 * 181.31800 * 13 11 10 15 15 C 1.53196 * 109.31124 * 298.63341 * 14 13 11 16 16 N 1.46924 * 108.77494 * 54.63681 * 15 14 13 17 17 C 1.36942 * 120.63306 * 126.36604 * 16 15 14 18 18 H 1.07998 * 120.00191 * 218.96525 * 17 16 15 19 19 C 1.38817 * 119.99737 * 38.95849 * 17 16 15 20 20 N 1.31614 * 119.99780 * 6.46534 * 19 17 16 21 21 Si 1.86791 * 120.00002 * 186.45894 * 19 17 16 22 22 H 1.48497 * 109.47318 * 90.00588 * 21 19 17 23 23 H 1.48507 * 109.47310 * 210.00468 * 21 19 17 24 24 H 1.48499 * 109.47524 * 330.00325 * 21 19 17 25 25 C 1.46923 * 118.74013 * 306.38997 * 16 15 14 26 26 C 1.53046 * 109.53640 * 61.24215 * 10 9 8 27 27 C 1.46919 * 120.63243 * 6.98301 * 7 5 4 28 28 N 1.31811 * 106.96382 * 0.40001 * 4 3 2 29 29 N 1.28467 * 110.07290 * 359.74890 * 28 4 3 30 30 H 0.96996 * 124.88598 * 180.02562 * 29 28 4 31 31 H 1.08998 * 109.47466 * 269.71735 * 1 2 3 32 32 H 1.09000 * 109.47545 * 149.71149 * 1 2 3 33 33 H 1.09002 * 109.47221 * 29.71187 * 1 2 3 34 34 H 1.08001 * 127.24522 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.58678 * 353.41767 * 8 7 5 36 36 H 1.08996 * 109.59066 * 113.83972 * 8 7 5 37 37 H 1.08999 * 109.56586 * 185.55767 * 9 8 7 38 38 H 1.08994 * 109.36290 * 65.49202 * 9 8 7 39 39 H 1.08997 * 109.45310 * 301.23348 * 10 9 8 40 40 H 1.08996 * 109.45841 * 301.33658 * 13 11 10 41 41 H 1.08999 * 109.45814 * 61.29568 * 13 11 10 42 42 H 1.08999 * 109.49597 * 178.68586 * 14 13 11 43 43 H 1.09000 * 109.52357 * 58.60314 * 14 13 11 44 44 H 1.08992 * 109.58961 * 294.84802 * 15 14 13 45 45 H 1.09002 * 109.58501 * 174.42296 * 15 14 13 46 46 H 0.97002 * 119.99905 * 179.97438 * 20 19 17 47 47 H 1.08992 * 109.58869 * 293.82127 * 25 16 15 48 48 H 1.09003 * 109.58708 * 173.39699 * 25 16 15 49 49 H 1.09007 * 109.49828 * 178.68492 * 26 10 9 50 50 H 1.09001 * 109.50076 * 58.58433 * 26 10 9 51 51 H 1.08992 * 109.58881 * 246.15931 * 27 7 5 52 52 H 1.09003 * 109.58815 * 6.58729 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 0.0032 5 6 4.8765 1.3811 0.0075 6 8 4.8257 2.5882 0.1432 7 7 6.0683 0.7690 -0.1390 8 6 7.3204 1.5233 0.0091 9 6 8.1794 1.3113 -1.2362 10 6 8.3728 -0.1887 -1.4704 11 6 9.2589 -0.4028 -2.6992 12 1 8.7832 0.0428 -3.5728 13 6 10.6212 0.2550 -2.4673 14 6 11.4968 0.0698 -3.7087 15 6 11.7177 -1.4261 -3.9543 16 7 10.4096 -2.0904 -4.0340 17 6 10.0867 -2.8682 -5.1139 18 1 9.0858 -2.8413 -5.5187 19 6 11.0459 -3.6911 -5.6882 20 7 12.2263 -3.8211 -5.1208 21 14 10.6612 -4.6138 -7.2660 22 1 11.0384 -3.7771 -8.4334 23 1 11.4312 -5.8832 -7.2975 24 1 9.2081 -4.9149 -7.3218 25 6 9.4544 -1.9040 -2.9334 26 6 7.0121 -0.8502 -1.7016 27 6 6.1400 -0.6638 -0.4560 28 7 3.5420 -0.7296 -0.0040 29 7 2.3080 -1.0870 -0.0059 30 1 1.9965 -2.0056 -0.0106 31 1 -0.3634 -0.0051 1.0276 32 1 -0.3634 -0.8874 -0.5183 33 1 -0.3634 0.8926 -0.5094 34 1 2.0057 2.1260 -0.0004 35 1 7.0968 2.5843 0.1207 36 1 7.8599 1.1672 0.8867 37 1 9.1506 1.7855 -1.0949 38 1 7.6804 1.7527 -2.0988 39 1 8.8492 -0.6340 -0.5971 40 1 10.4827 1.3191 -2.2760 41 1 11.1064 -0.2081 -1.6082 42 1 12.4584 0.5586 -3.5518 43 1 11.0011 0.5112 -4.5733 44 1 12.2934 -1.8504 -3.1319 45 1 12.2567 -1.5668 -4.8912 46 1 12.8965 -4.3964 -5.5219 47 1 9.8455 -2.3672 -2.0276 48 1 8.5000 -2.3601 -3.1966 49 1 7.1525 -1.9144 -1.8915 50 1 6.5241 -0.3883 -2.5598 51 1 6.5812 -1.2019 0.3829 52 1 5.1378 -1.0455 -0.6512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961335032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:00 Heat of formation + Delta-G solvation = 51.079670 kcal Electronic energy + Delta-G solvation = -31111.308058 eV Core-core repulsion = 27112.394921 eV Total energy + Delta-G solvation = -3998.913137 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.02357 -40.05631 -38.37556 -36.59809 -34.07499 -33.16795 -32.36807 -32.07132 -31.10035 -30.19568 -29.12257 -27.47963 -25.60694 -25.19769 -23.80024 -23.09850 -21.61341 -21.50242 -21.34678 -20.09334 -19.05044 -18.79463 -18.12939 -16.82912 -16.51855 -16.24857 -15.91111 -15.10461 -14.81901 -14.34338 -14.20927 -14.12861 -14.04378 -13.63308 -13.62435 -13.50708 -13.42515 -13.18704 -13.04244 -12.84918 -12.60081 -12.44168 -12.33349 -11.97147 -11.70099 -11.32252 -11.15449 -10.88722 -10.88311 -10.75480 -10.54452 -10.34424 -10.19061 -10.10772 -10.01491 -9.95193 -9.81980 -9.67316 -9.35263 -9.23697 -9.16549 -8.59976 -8.43086 -6.42816 -5.75101 -3.30459 1.31023 1.79177 2.46090 2.97996 3.27342 3.37694 3.44143 3.45496 4.09751 4.29255 4.50019 4.53225 4.83933 4.96401 4.98887 4.99743 5.07621 5.22045 5.27060 5.35759 5.38690 5.42033 5.50236 5.57382 5.59695 5.70067 5.71807 5.81741 5.87143 5.87936 5.96222 6.06771 6.09057 6.17711 6.21641 6.34792 6.36220 6.49855 6.54346 6.56618 6.61598 6.73262 6.75429 6.80057 6.96453 7.01125 7.15066 7.32062 7.46288 7.57828 7.72208 7.84010 8.10000 8.57722 9.28988 9.88148 10.52170 11.32393 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002478 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.195518 B =11295.730680 C =12905.085125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.015 3.985 3 C -0.179 4.179 4 C -0.003 4.003 5 C 0.601 3.399 6 O -0.540 6.540 7 N -0.594 5.594 8 C 0.112 3.888 9 C -0.129 4.129 10 C -0.079 4.079 11 C -0.097 4.097 12 H 0.063 0.937 13 C -0.103 4.103 14 C -0.144 4.144 15 C 0.175 3.825 16 N -0.591 5.591 17 C -0.256 4.256 18 H 0.058 0.942 19 C 0.011 3.989 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.278 1.278 25 C 0.155 3.845 26 C -0.129 4.129 27 C 0.087 3.913 28 N -0.255 5.255 29 N -0.384 5.384 30 H 0.444 0.556 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.017 0.983 45 H 0.074 0.926 46 H 0.254 0.746 47 H 0.014 0.986 48 H 0.052 0.948 49 H 0.082 0.918 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.046 7.639 12.922 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.164 4.164 5 C 0.387 3.613 6 O -0.416 6.416 7 N -0.327 5.327 8 C -0.010 4.010 9 C -0.167 4.167 10 C -0.099 4.099 11 C -0.117 4.117 12 H 0.082 0.918 13 C -0.141 4.141 14 C -0.183 4.183 15 C 0.050 3.950 16 N -0.314 5.314 17 C -0.386 4.386 18 H 0.076 0.924 19 C -0.188 4.188 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.028 3.972 26 C -0.168 4.168 27 C -0.036 4.036 28 N -0.090 5.090 29 N -0.098 5.098 30 H 0.289 0.711 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.180 0.820 35 H 0.108 0.892 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.032 0.968 48 H 0.070 0.930 49 H 0.100 0.900 50 H 0.081 0.919 51 H 0.084 0.916 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.247 7.242 12.935 24.294 hybrid contribution -0.577 -0.458 -0.887 1.153 sum -19.823 6.784 12.048 24.169 Atomic orbital electron populations 1.20369 0.86495 1.04116 1.03422 1.21477 0.95427 0.87167 1.07024 1.21514 0.90395 0.99782 1.09013 1.21952 0.95215 0.89679 1.09506 1.16989 0.81589 0.86065 0.76637 1.90769 1.86357 1.13254 1.51199 1.47965 1.05174 1.10981 1.68542 1.21607 0.83590 0.97553 0.98254 1.21950 0.99775 0.97448 0.97539 1.21161 0.95221 0.94356 0.99122 1.21678 0.94514 0.99515 0.96010 0.91814 1.21470 0.95810 0.98490 0.98283 1.22200 0.97821 1.01170 0.97115 1.20680 0.87559 0.86306 1.00498 1.43906 1.13608 1.55058 1.18794 1.19074 0.97209 1.16592 1.05771 0.92391 1.25371 0.97179 0.97030 0.99270 1.69969 1.05118 1.40120 1.39189 0.86320 0.77814 0.79325 0.83436 1.21382 1.21644 1.20358 1.20966 0.93709 0.91399 0.91104 1.22024 0.95445 1.02067 0.97225 1.22511 1.03933 0.79601 0.97546 1.73471 1.00841 1.14861 1.19856 1.43519 1.03199 1.09644 1.53422 0.71134 0.90219 0.90995 0.89432 0.82033 0.89193 0.91441 0.90290 0.91686 0.91317 0.93602 0.92981 0.93641 0.93013 0.96472 0.90794 0.93636 0.96779 0.92971 0.89952 0.91853 0.91623 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.28 10.44 36.01 0.38 0.09 16 2 C 0.01 0.11 7.23 -82.21 -0.59 -0.49 16 3 C -0.18 -1.81 10.74 -39.36 -0.42 -2.24 16 4 C 0.00 -0.04 6.82 -82.76 -0.56 -0.60 16 5 C 0.60 8.62 7.69 -12.39 -0.10 8.53 16 6 O -0.54 -9.05 16.36 5.30 0.09 -8.96 16 7 N -0.59 -7.76 2.98 -174.20 -0.52 -8.28 16 8 C 0.11 1.37 6.41 -3.93 -0.03 1.34 16 9 C -0.13 -1.62 5.03 -26.83 -0.14 -1.76 16 10 C -0.08 -1.10 1.74 -90.57 -0.16 -1.25 16 11 C -0.10 -1.66 1.92 -90.50 -0.17 -1.84 16 12 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 13 C -0.10 -1.75 4.86 -26.69 -0.13 -1.88 16 14 C -0.14 -2.82 6.08 -26.61 -0.16 -2.98 16 15 C 0.18 4.26 5.21 -3.71 -0.02 4.24 16 16 N -0.59 -15.01 2.94 -172.32 -0.51 -15.51 16 17 C -0.26 -7.11 9.49 -15.05 -0.14 -7.26 16 18 H 0.06 1.59 7.84 -52.49 -0.41 1.18 16 19 C 0.01 0.31 5.10 -17.43 -0.09 0.22 16 20 N -0.90 -26.45 11.41 55.49 0.63 -25.81 16 21 Si 0.90 21.81 29.56 -169.99 -5.02 16.78 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.15 3.24 5.27 -3.71 -0.02 3.22 16 26 C -0.13 -1.72 5.05 -26.60 -0.13 -1.85 16 27 C 0.09 1.05 6.11 -3.71 -0.02 1.02 16 28 N -0.25 -2.70 8.72 33.42 0.29 -2.41 16 29 N -0.38 -2.80 6.83 33.50 0.23 -2.57 16 30 H 0.44 1.63 8.96 -190.44 -1.71 -0.07 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.09 1.15 7.00 -51.93 -0.36 0.78 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.94 6.33 -51.93 -0.33 0.61 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.68 6.33 -51.93 -0.33 0.35 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 2.01 6.58 -51.93 -0.34 1.66 16 46 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 47 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 48 H 0.05 1.08 6.52 -51.93 -0.34 0.74 16 49 H 0.08 1.12 6.49 -51.93 -0.34 0.78 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.12 1.44 4.18 -68.79 -0.29 1.15 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -33.69 395.90 -11.28 -44.97 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -9.92 Total: -0.70 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -2.51 Total: -3.48 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.13 Total: -54.58 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.69 -11.28 -44.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961335032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.050 kcal (2) G-P(sol) polarization free energy of solvation -33.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds