Wall clock time and date at job start Wed Apr 1 2020 03:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35372 * 126.38643 * 2 1 4 4 C 1.41500 * 105.50166 * 179.86736 * 3 2 1 5 5 C 1.47711 * 126.51759 * 180.15185 * 4 3 2 6 6 O 1.21571 * 120.00170 * 7.33881 * 5 4 3 7 7 N 1.34781 * 119.99771 * 187.34575 * 5 4 3 8 8 C 1.46923 * 120.62812 * 186.70609 * 7 5 4 9 9 C 1.52762 * 109.01019 * 233.58605 * 8 7 5 10 10 C 1.53042 * 109.37977 * 305.58473 * 9 8 7 11 11 C 1.52999 * 109.46245 * 181.25904 * 10 9 8 12 12 H 1.08996 * 109.49595 * 299.99969 * 11 10 9 13 13 C 1.53045 * 109.49315 * 60.09556 * 11 10 9 14 14 C 1.53039 * 109.53567 * 181.31800 * 13 11 10 15 15 C 1.53196 * 109.31124 * 298.63341 * 14 13 11 16 16 N 1.46924 * 108.77494 * 54.63681 * 15 14 13 17 17 C 1.36942 * 120.63306 * 126.36604 * 16 15 14 18 18 H 1.07998 * 120.00191 * 218.96525 * 17 16 15 19 19 C 1.38817 * 119.99737 * 38.95849 * 17 16 15 20 20 N 1.31614 * 119.99780 * 6.46534 * 19 17 16 21 21 Si 1.86791 * 120.00002 * 186.45894 * 19 17 16 22 22 H 1.48497 * 109.47318 * 90.00588 * 21 19 17 23 23 H 1.48507 * 109.47310 * 210.00468 * 21 19 17 24 24 H 1.48499 * 109.47524 * 330.00325 * 21 19 17 25 25 C 1.46923 * 118.74013 * 306.38997 * 16 15 14 26 26 C 1.53046 * 109.53640 * 61.24215 * 10 9 8 27 27 C 1.46919 * 120.63243 * 6.98301 * 7 5 4 28 28 N 1.31811 * 106.96382 * 0.40001 * 4 3 2 29 29 N 1.28467 * 110.07290 * 359.74890 * 28 4 3 30 30 H 0.96996 * 124.88598 * 180.02562 * 29 28 4 31 31 H 1.08998 * 109.47466 * 269.71735 * 1 2 3 32 32 H 1.09000 * 109.47545 * 149.71149 * 1 2 3 33 33 H 1.09002 * 109.47221 * 29.71187 * 1 2 3 34 34 H 1.08001 * 127.24522 * 359.97438 * 3 2 1 35 35 H 1.09004 * 109.58678 * 353.41767 * 8 7 5 36 36 H 1.08996 * 109.59066 * 113.83972 * 8 7 5 37 37 H 1.08999 * 109.56586 * 185.55767 * 9 8 7 38 38 H 1.08994 * 109.36290 * 65.49202 * 9 8 7 39 39 H 1.08997 * 109.45310 * 301.23348 * 10 9 8 40 40 H 1.08996 * 109.45841 * 301.33658 * 13 11 10 41 41 H 1.08999 * 109.45814 * 61.29568 * 13 11 10 42 42 H 1.08999 * 109.49597 * 178.68586 * 14 13 11 43 43 H 1.09000 * 109.52357 * 58.60314 * 14 13 11 44 44 H 1.08992 * 109.58961 * 294.84802 * 15 14 13 45 45 H 1.09002 * 109.58501 * 174.42296 * 15 14 13 46 46 H 0.97002 * 119.99905 * 179.97438 * 20 19 17 47 47 H 1.08992 * 109.58869 * 293.82127 * 25 16 15 48 48 H 1.09003 * 109.58708 * 173.39699 * 25 16 15 49 49 H 1.09007 * 109.49828 * 178.68492 * 26 10 9 50 50 H 1.09001 * 109.50076 * 58.58433 * 26 10 9 51 51 H 1.08992 * 109.58881 * 246.15931 * 27 7 5 52 52 H 1.09003 * 109.58815 * 6.58729 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5854 0.0032 5 6 4.8765 1.3811 0.0075 6 8 4.8257 2.5882 0.1432 7 7 6.0683 0.7690 -0.1390 8 6 7.3204 1.5233 0.0091 9 6 8.1794 1.3113 -1.2362 10 6 8.3728 -0.1887 -1.4704 11 6 9.2589 -0.4028 -2.6992 12 1 8.7832 0.0428 -3.5728 13 6 10.6212 0.2550 -2.4673 14 6 11.4968 0.0698 -3.7087 15 6 11.7177 -1.4261 -3.9543 16 7 10.4096 -2.0904 -4.0340 17 6 10.0867 -2.8682 -5.1139 18 1 9.0858 -2.8413 -5.5187 19 6 11.0459 -3.6911 -5.6882 20 7 12.2263 -3.8211 -5.1208 21 14 10.6612 -4.6138 -7.2660 22 1 11.0384 -3.7771 -8.4334 23 1 11.4312 -5.8832 -7.2975 24 1 9.2081 -4.9149 -7.3218 25 6 9.4544 -1.9040 -2.9334 26 6 7.0121 -0.8502 -1.7016 27 6 6.1400 -0.6638 -0.4560 28 7 3.5420 -0.7296 -0.0040 29 7 2.3080 -1.0870 -0.0059 30 1 1.9965 -2.0056 -0.0106 31 1 -0.3634 -0.0051 1.0276 32 1 -0.3634 -0.8874 -0.5183 33 1 -0.3634 0.8926 -0.5094 34 1 2.0057 2.1260 -0.0004 35 1 7.0968 2.5843 0.1207 36 1 7.8599 1.1672 0.8867 37 1 9.1506 1.7855 -1.0949 38 1 7.6804 1.7527 -2.0988 39 1 8.8492 -0.6340 -0.5971 40 1 10.4827 1.3191 -2.2760 41 1 11.1064 -0.2081 -1.6082 42 1 12.4584 0.5586 -3.5518 43 1 11.0011 0.5112 -4.5733 44 1 12.2934 -1.8504 -3.1319 45 1 12.2567 -1.5668 -4.8912 46 1 12.8965 -4.3964 -5.5219 47 1 9.8455 -2.3672 -2.0276 48 1 8.5000 -2.3601 -3.1966 49 1 7.1525 -1.9144 -1.8915 50 1 6.5241 -0.3883 -2.5598 51 1 6.5812 -1.2019 0.3829 52 1 5.1378 -1.0455 -0.6512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961335032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:59 Heat of formation + Delta-G solvation = 30.956168 kcal Electronic energy + Delta-G solvation = -31112.180678 eV Core-core repulsion = 27112.394921 eV Total energy + Delta-G solvation = -3999.785758 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.73146 -41.13752 -39.74952 -37.99671 -35.57234 -34.12953 -33.55174 -33.00259 -32.42572 -31.72755 -30.58451 -27.98222 -27.23639 -26.63813 -24.97265 -24.34277 -23.15344 -22.66495 -22.22217 -21.31730 -20.59321 -19.83423 -18.87768 -18.60063 -17.61138 -17.03120 -16.98132 -16.82350 -16.12938 -15.71832 -15.56662 -15.24117 -15.03842 -14.88272 -14.78642 -14.73486 -14.50749 -14.18011 -14.05329 -13.95854 -13.70033 -13.66145 -13.47823 -13.12496 -13.01886 -12.83919 -12.77944 -12.47024 -12.29661 -12.16419 -12.03950 -11.93594 -11.71480 -11.51985 -11.49601 -11.34198 -11.15554 -10.86748 -10.63255 -10.55443 -10.44649 -9.90162 -9.63518 -8.48756 -7.86440 -5.46457 0.45827 1.11590 1.44530 1.45177 1.54660 1.77308 2.14788 2.30666 2.48757 3.27251 3.28220 3.65161 3.74093 3.83019 3.85716 3.95604 4.01257 4.17974 4.24320 4.34580 4.34835 4.43341 4.46519 4.56777 4.61225 4.63572 4.64118 4.80694 4.81356 4.86905 4.92668 4.95978 4.99777 5.03153 5.06204 5.10955 5.13423 5.14595 5.19364 5.23583 5.33629 5.37455 5.41930 5.45313 5.54989 5.62542 5.63901 5.69087 5.81057 6.13266 6.33386 6.45715 6.82373 7.09579 7.18688 7.86643 8.44106 9.17827 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.002478 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.195518 B =11295.730680 C =12905.085125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.037 3.963 3 C -0.206 4.206 4 C -0.033 4.033 5 C 0.595 3.405 6 O -0.575 6.575 7 N -0.595 5.595 8 C 0.112 3.888 9 C -0.120 4.120 10 C -0.070 4.070 11 C -0.083 4.083 12 H 0.049 0.951 13 C -0.098 4.098 14 C -0.134 4.134 15 C 0.181 3.819 16 N -0.611 5.611 17 C -0.268 4.268 18 H 0.057 0.943 19 C -0.043 4.043 20 N -0.933 5.933 21 Si 0.967 3.033 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.267 1.267 25 C 0.154 3.846 26 C -0.125 4.125 27 C 0.094 3.906 28 N -0.266 5.266 29 N -0.369 5.369 30 H 0.461 0.539 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.044 0.956 44 H -0.004 1.004 45 H 0.037 0.963 46 H 0.251 0.749 47 H 0.009 0.991 48 H 0.049 0.951 49 H 0.077 0.923 50 H 0.050 0.950 51 H 0.077 0.923 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.170 7.689 13.762 27.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 C -0.234 4.234 4 C -0.192 4.192 5 C 0.382 3.618 6 O -0.453 6.453 7 N -0.326 5.326 8 C -0.010 4.010 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.103 4.103 12 H 0.068 0.932 13 C -0.136 4.136 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.335 5.335 17 C -0.399 4.399 18 H 0.074 0.926 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.192 1.192 25 C 0.029 3.971 26 C -0.163 4.163 27 C -0.029 4.029 28 N -0.103 5.103 29 N -0.085 5.085 30 H 0.309 0.691 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.179 0.821 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.063 0.937 44 H 0.014 0.986 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.027 0.973 48 H 0.068 0.932 49 H 0.096 0.904 50 H 0.069 0.931 51 H 0.095 0.905 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -21.387 7.277 13.787 26.466 hybrid contribution 0.011 -0.524 -1.132 1.247 sum -21.376 6.753 12.656 25.743 Atomic orbital electron populations 1.20548 0.83333 1.05537 1.04820 1.21954 0.96986 0.85965 1.04072 1.21709 0.90197 1.00854 1.10674 1.21832 0.95157 0.90428 1.11792 1.17336 0.82481 0.85918 0.76030 1.90731 1.86962 1.14672 1.52971 1.48069 1.05248 1.11323 1.68008 1.21657 0.83348 0.97343 0.98664 1.21863 1.00476 0.96144 0.97284 1.21065 0.94708 0.95573 0.97591 1.21476 0.95470 0.96303 0.97091 0.93232 1.21459 0.94750 1.00507 0.96842 1.22048 0.99608 0.97347 0.98309 1.20497 0.86819 0.89404 0.97728 1.44192 1.14455 1.55307 1.19537 1.19367 0.97177 1.16638 1.06673 0.92559 1.26125 0.97077 0.98141 1.02541 1.70129 1.05943 1.40952 1.40724 0.85288 0.78006 0.77721 0.79527 1.21130 1.21781 1.19175 1.21079 0.92427 0.94178 0.89417 1.21955 0.95343 1.01521 0.97481 1.22499 1.04032 0.79217 0.97149 1.73327 1.02487 1.14073 1.20406 1.43614 1.02392 1.10754 1.51777 0.69100 0.88686 0.88855 0.88733 0.82055 0.89835 0.89635 0.88823 0.92890 0.90414 0.90365 0.92587 0.91519 0.93678 0.98639 0.94465 0.94047 0.97265 0.93220 0.90418 0.93097 0.90485 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.44 71.24 0.74 0.46 16 2 C 0.04 0.45 7.23 41.40 0.30 0.75 16 3 C -0.21 -4.05 10.74 22.41 0.24 -3.81 16 4 C -0.03 -0.81 6.82 42.46 0.29 -0.52 16 5 C 0.59 17.11 7.69 86.75 0.67 17.77 16 6 O -0.57 -19.65 16.36 -3.94 -0.06 -19.71 16 7 N -0.60 -15.07 2.98 -823.31 -2.45 -17.52 16 8 C 0.11 2.56 6.41 86.22 0.55 3.11 16 9 C -0.12 -2.78 5.03 30.53 0.15 -2.62 16 10 C -0.07 -1.82 1.74 -10.76 -0.02 -1.84 16 11 C -0.08 -2.77 1.92 -10.71 -0.02 -2.79 16 12 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 13 C -0.10 -3.13 4.86 30.62 0.15 -2.99 16 14 C -0.13 -5.15 6.08 30.67 0.19 -4.96 16 15 C 0.18 9.03 5.21 86.36 0.45 9.48 16 16 N -0.61 -31.63 2.94 -699.11 -2.06 -33.69 16 17 C -0.27 -15.14 9.49 84.03 0.80 -14.35 16 18 H 0.06 3.14 7.84 -2.91 -0.02 3.11 16 19 C -0.04 -2.43 5.10 84.86 0.43 -1.99 16 20 N -0.93 -56.32 11.41 21.65 0.25 -56.07 16 21 Si 0.97 45.46 29.56 68.60 2.03 47.49 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 C 0.15 6.47 5.27 86.36 0.46 6.92 16 26 C -0.12 -3.19 5.05 30.68 0.15 -3.04 16 27 C 0.09 2.14 6.11 86.37 0.53 2.67 16 28 N -0.27 -5.32 8.72 -48.18 -0.42 -5.74 16 29 N -0.37 -4.60 6.83 -47.93 -0.33 -4.92 16 30 H 0.46 2.14 8.96 -220.00 -1.97 0.17 16 31 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.09 -0.03 8.14 -2.39 -0.02 -0.04 16 33 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 35 H 0.08 2.07 7.00 -2.38 -0.02 2.05 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.92 6.33 -2.39 -0.02 1.90 16 38 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.08 2.05 6.33 -2.39 -0.02 2.04 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.04 2.09 6.58 -2.39 -0.02 2.08 16 46 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.05 2.07 6.52 -2.39 -0.02 2.05 16 49 H 0.08 2.06 6.49 -2.38 -0.02 2.05 16 50 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.13 2.84 4.18 -24.20 -0.10 2.74 16 Total: -1.00 -75.57 395.90 1.88 -73.69 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -1.14 Total: 14.23 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.06 Total: 2.25 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.01 Total: -117.95 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.06 Total: -19.71 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -75.57 1.88 -73.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961335032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.648 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds