Wall clock time and date at job start Wed Apr 1 2020 03:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35362 * 126.38050 * 2 1 4 4 C 1.41505 * 105.50084 * 180.24297 * 3 2 1 5 5 C 1.47710 * 126.52212 * 179.70427 * 4 3 2 6 6 O 1.21568 * 119.99362 * 6.90016 * 5 4 3 7 7 N 1.34772 * 120.00235 * 186.90462 * 5 4 3 8 8 C 1.46931 * 120.63001 * 5.93284 * 7 5 4 9 9 C 1.53625 * 108.54313 * 126.36970 * 8 7 5 10 10 C 1.53036 * 109.24507 * 54.85449 * 9 8 7 11 11 C 1.52995 * 109.44924 * 178.49845 * 10 9 8 12 12 H 1.08996 * 109.49637 * 59.99650 * 11 10 9 13 13 C 1.53037 * 109.49560 * 299.89607 * 11 10 9 14 14 C 1.53045 * 109.53500 * 178.68357 * 13 11 10 15 15 C 1.53195 * 109.31261 * 61.37130 * 14 13 11 16 16 N 1.46928 * 108.77174 * 305.36126 * 15 14 13 17 17 C 1.36935 * 120.62906 * 233.59044 * 16 15 14 18 18 H 1.08004 * 120.00037 * 150.82651 * 17 16 15 19 19 C 1.38816 * 119.99859 * 330.81547 * 17 16 15 20 20 N 1.31610 * 120.00200 * 341.56221 * 19 17 16 21 21 Si 1.86803 * 119.99724 * 161.55769 * 19 17 16 22 22 H 1.48500 * 109.47283 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47117 * 120.00172 * 21 19 17 24 24 H 1.48500 * 109.47170 * 240.00472 * 21 19 17 25 25 C 1.46923 * 118.74162 * 53.60985 * 16 15 14 26 26 C 1.53047 * 109.53727 * 298.51216 * 10 9 8 27 27 C 1.46924 * 120.63168 * 186.20752 * 7 5 4 28 28 N 1.31812 * 106.95971 * 359.56773 * 4 3 2 29 29 N 1.28471 * 110.07531 * 0.45179 * 28 4 3 30 30 H 0.97004 * 124.88283 * 179.73555 * 29 28 4 31 31 H 1.09006 * 109.46792 * 90.00158 * 1 2 3 32 32 H 1.09001 * 109.46653 * 209.99595 * 1 2 3 33 33 H 1.08992 * 109.47078 * 329.99870 * 1 2 3 34 34 H 1.07995 * 127.25495 * 359.97438 * 3 2 1 35 35 H 1.09008 * 109.58170 * 246.19867 * 8 7 5 36 36 H 1.08998 * 109.58422 * 6.62036 * 8 7 5 37 37 H 1.09002 * 109.62896 * 294.86317 * 9 8 7 38 38 H 1.08996 * 109.42581 * 174.72528 * 9 8 7 39 39 H 1.09004 * 109.45762 * 58.52773 * 10 9 8 40 40 H 1.08999 * 109.46243 * 298.70663 * 13 11 10 41 41 H 1.09005 * 109.45930 * 58.66786 * 13 11 10 42 42 H 1.08993 * 109.49765 * 301.41308 * 14 13 11 43 43 H 1.09003 * 109.52287 * 181.33640 * 14 13 11 44 44 H 1.08999 * 109.58378 * 185.57805 * 15 14 13 45 45 H 1.08997 * 109.70423 * 65.21767 * 15 14 13 46 46 H 0.97000 * 119.99963 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.59423 * 186.60205 * 25 16 15 48 48 H 1.09003 * 109.70271 * 66.24423 * 25 16 15 49 49 H 1.08996 * 109.49717 * 301.41258 * 26 10 9 50 50 H 1.09001 * 109.52223 * 181.33043 * 26 10 9 51 51 H 1.09002 * 109.58450 * 353.37671 * 27 7 5 52 52 H 1.09005 * 109.58639 * 113.79722 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3100 1.0898 0.0000 4 6 3.6321 0.5855 -0.0058 5 6 4.8765 1.3813 -0.0142 6 8 4.8260 2.5895 0.1098 7 7 6.0677 0.7679 -0.1593 8 6 6.1387 -0.6727 -0.4396 9 6 6.9992 -0.8844 -1.6945 10 6 8.3609 -0.2162 -1.4910 11 6 9.2353 -0.4562 -2.7233 12 1 8.7500 -0.0317 -3.6021 13 6 9.4326 -1.9604 -2.9245 14 6 10.2800 -2.2026 -4.1757 15 6 11.6558 -1.5553 -3.9890 16 7 11.4694 -0.1375 -3.6516 17 6 12.0951 0.8405 -4.3776 18 1 11.6425 1.8167 -4.4712 19 6 13.3112 0.5774 -4.9931 20 7 14.0378 -0.4484 -4.6032 21 14 13.9164 1.6792 -6.3748 22 1 12.9227 2.7547 -6.6217 23 1 15.2164 2.2857 -5.9910 24 1 14.0914 0.8735 -7.6099 25 6 10.5993 0.2110 -2.5202 26 6 8.1675 1.2884 -1.2882 27 6 7.3201 1.5258 -0.0343 28 7 3.5420 -0.7296 0.0007 29 7 2.3080 -1.0871 0.0004 30 1 1.9966 -2.0057 0.0008 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8901 0.5138 33 1 -0.3633 0.8899 0.5138 34 1 2.0057 2.1260 -0.0004 35 1 6.5907 -1.1880 0.4080 36 1 5.1351 -1.0611 -0.6131 37 1 6.5024 -0.4422 -2.5581 38 1 7.1393 -1.9523 -1.8621 39 1 8.8464 -0.6416 -0.6127 40 1 9.9400 -2.3796 -2.0556 41 1 8.4617 -2.4411 -3.0448 42 1 9.7850 -1.7621 -5.0411 43 1 10.4005 -3.2746 -4.3322 44 1 12.2274 -1.6388 -4.9133 45 1 12.1909 -2.0557 -3.1819 46 1 14.8874 -0.6325 -5.0335 47 1 10.4738 1.2928 -2.4752 48 1 11.0449 -0.1441 -1.5909 49 1 7.6597 1.7100 -2.1556 50 1 9.1390 1.7674 -1.1669 51 1 7.0963 2.5884 0.0597 52 1 7.8665 1.1861 0.8456 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961335033.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:02 Heat of formation + Delta-G solvation = 33.667159 kcal Electronic energy + Delta-G solvation = -31055.555621 eV Core-core repulsion = 27055.887421 eV Total energy + Delta-G solvation = -3999.668200 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.72858 -41.12640 -39.76340 -38.00668 -35.58538 -34.18223 -33.50497 -32.95887 -32.45199 -31.70695 -30.59127 -27.96751 -27.22086 -26.67305 -24.98892 -24.34348 -23.05957 -22.78866 -22.21807 -21.30298 -20.58017 -19.84445 -18.87201 -18.62950 -17.60807 -17.02477 -16.96041 -16.83593 -16.11909 -15.72986 -15.58341 -15.21017 -15.12868 -14.86950 -14.80809 -14.61816 -14.55597 -14.17436 -14.05980 -13.97558 -13.76175 -13.61006 -13.45027 -13.22488 -12.99986 -12.83905 -12.79304 -12.42339 -12.28535 -12.18208 -11.99990 -11.89859 -11.77552 -11.55705 -11.47829 -11.35766 -11.11382 -10.82600 -10.69715 -10.52440 -10.43934 -9.89712 -9.63397 -8.64348 -7.88063 -5.33269 0.45685 1.11897 1.43153 1.45023 1.55924 1.76883 2.15886 2.30128 2.49883 3.25129 3.27203 3.63694 3.74318 3.81225 3.87071 3.92686 4.03079 4.18329 4.22956 4.33822 4.34931 4.43201 4.46209 4.56102 4.59639 4.63141 4.63800 4.78630 4.82251 4.89114 4.91254 4.96500 4.98520 5.02852 5.07062 5.10081 5.13299 5.14450 5.17825 5.22493 5.35028 5.35292 5.41472 5.46390 5.54185 5.61699 5.65235 5.68904 5.80846 6.13870 6.35269 6.39554 6.83299 7.09774 7.15320 7.88082 8.40048 9.17787 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.002170 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.885249 B =12897.996777 C =13444.943143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.038 3.962 3 C -0.208 4.208 4 C -0.032 4.032 5 C 0.592 3.408 6 O -0.578 6.578 7 N -0.595 5.595 8 C 0.088 3.912 9 C -0.120 4.120 10 C -0.070 4.070 11 C -0.083 4.083 12 H 0.050 0.950 13 C -0.097 4.097 14 C -0.133 4.133 15 C 0.176 3.824 16 N -0.611 5.611 17 C -0.261 4.261 18 H 0.061 0.939 19 C -0.051 4.051 20 N -0.933 5.933 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.151 3.849 26 C -0.124 4.124 27 C 0.115 3.885 28 N -0.262 5.262 29 N -0.367 5.367 30 H 0.462 0.538 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.132 0.868 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.043 0.957 45 H -0.005 1.005 46 H 0.250 0.750 47 H 0.047 0.953 48 H 0.011 0.989 49 H 0.051 0.949 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.826 -6.241 11.394 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.236 4.236 4 C -0.191 4.191 5 C 0.380 3.620 6 O -0.457 6.457 7 N -0.327 5.327 8 C -0.034 4.034 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.103 4.103 12 H 0.068 0.932 13 C -0.134 4.134 14 C -0.172 4.172 15 C 0.051 3.949 16 N -0.334 5.334 17 C -0.391 4.391 18 H 0.078 0.922 19 C -0.246 4.246 20 N -0.579 5.579 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.025 3.975 26 C -0.162 4.162 27 C -0.007 4.007 28 N -0.099 5.099 29 N -0.083 5.083 30 H 0.310 0.690 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.177 0.823 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.013 0.987 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.029 0.971 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.097 0.903 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -29.021 -6.566 11.417 31.870 hybrid contribution 0.792 1.030 -0.904 1.583 sum -28.230 -5.535 10.513 30.628 Atomic orbital electron populations 1.20552 0.83339 1.05602 1.04773 1.21917 0.96954 0.85944 1.04031 1.21701 0.90304 1.00861 1.10708 1.21762 0.94932 0.90495 1.11880 1.17399 0.82577 0.85972 0.76029 1.90741 1.86976 1.14900 1.53049 1.48083 1.04974 1.11019 1.68575 1.22724 1.04490 0.78604 0.97575 1.22037 0.94372 1.02027 0.97362 1.21068 0.95399 0.94778 0.97674 1.21466 0.95160 0.96312 0.97353 0.93171 1.21455 0.99606 0.95327 0.97019 1.22027 0.97123 0.99646 0.98385 1.20565 0.93465 0.83286 0.97623 1.44320 1.53704 1.02273 1.33151 1.19474 0.99782 0.94665 1.25226 0.92175 1.25793 0.95700 0.99946 1.03188 1.70204 1.12624 1.32536 1.42537 0.85274 0.77701 0.78520 0.79376 1.19316 1.21786 1.21508 1.21098 0.90100 0.97446 0.88815 1.21924 0.99867 0.97124 0.97288 1.21666 0.83523 0.97150 0.98410 1.73259 1.02433 1.13785 1.20430 1.43603 1.02338 1.10722 1.51678 0.68952 0.88875 0.88599 0.88793 0.82327 0.90319 0.85131 0.92909 0.88712 0.90373 0.92538 0.90056 0.93613 0.91320 0.93846 0.98663 0.94135 0.93433 0.97147 0.93045 0.90580 0.90342 0.89709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.44 71.24 0.74 0.57 16 2 C 0.04 0.42 7.23 41.41 0.30 0.71 16 3 C -0.21 -3.91 10.74 22.41 0.24 -3.67 16 4 C -0.03 -0.74 6.83 42.46 0.29 -0.45 16 5 C 0.59 17.05 7.69 86.75 0.67 17.72 16 6 O -0.58 -20.36 16.35 -3.93 -0.06 -20.43 16 7 N -0.60 -15.02 2.97 -821.61 -2.44 -17.46 16 8 C 0.09 1.79 6.16 86.51 0.53 2.32 16 9 C -0.12 -2.57 5.06 30.82 0.16 -2.42 16 10 C -0.07 -1.80 1.74 -10.77 -0.02 -1.82 16 11 C -0.08 -2.73 1.92 -10.72 -0.02 -2.75 16 12 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.10 -2.99 4.86 30.62 0.15 -2.84 16 14 C -0.13 -5.00 6.08 30.67 0.19 -4.81 16 15 C 0.18 8.74 5.30 86.36 0.46 9.20 16 16 N -0.61 -31.73 2.98 -699.08 -2.09 -33.82 16 17 C -0.26 -14.92 9.56 84.03 0.80 -14.12 16 18 H 0.06 3.40 7.90 -2.91 -0.02 3.38 16 19 C -0.05 -2.93 4.86 84.86 0.41 -2.52 16 20 N -0.93 -56.78 11.38 21.65 0.25 -56.53 16 21 Si 0.96 46.32 29.59 68.60 2.03 48.36 16 22 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 C 0.15 6.36 5.27 86.37 0.46 6.81 16 26 C -0.12 -3.34 5.05 30.67 0.15 -3.18 16 27 C 0.11 2.89 6.44 86.36 0.56 3.45 16 28 N -0.26 -4.64 8.69 -48.17 -0.42 -5.06 16 29 N -0.37 -3.73 6.83 -47.93 -0.33 -4.06 16 30 H 0.46 0.86 8.96 -219.99 -1.97 -1.11 16 31 H 0.09 0.05 8.14 -2.38 -0.02 0.03 16 32 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.13 2.52 4.12 -32.38 -0.13 2.38 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.73 6.33 -2.39 -0.02 1.72 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 2.00 6.33 -2.38 -0.02 1.98 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.04 2.44 6.20 -2.39 -0.01 2.42 16 45 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.05 2.02 6.52 -2.39 -0.02 2.00 16 48 H 0.01 0.45 8.14 -2.39 -0.02 0.44 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 2.14 6.49 -2.39 -0.02 2.13 16 51 H 0.08 2.20 7.00 -2.39 -0.02 2.18 16 52 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -77.18 395.55 1.84 -75.33 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -1.17 Total: 11.46 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.07 Total: 2.21 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.02 Total: -116.93 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.43 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.36 kcal Total: -77.18 1.84 -75.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961335033.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.001 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds