Wall clock time and date at job start Wed Apr 1 2020 03:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35312 * 126.12912 * 2 1 4 4 C 1.39863 * 107.92307 * 180.14534 * 3 2 1 5 5 C 1.50696 * 125.90108 * 179.86067 * 4 3 2 6 6 C 1.50703 * 109.47123 * 124.71407 * 5 4 3 7 7 O 1.21289 * 119.99903 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00452 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62471 * 0.02687 * 8 6 5 10 10 C 1.53196 * 108.77357 * 126.36998 * 9 8 6 11 11 C 1.53044 * 109.31377 * 54.63254 * 10 9 8 12 12 C 1.53044 * 109.53716 * 298.63661 * 11 10 9 13 13 H 1.09003 * 109.49363 * 301.41238 * 12 11 10 14 14 C 1.52997 * 109.52158 * 181.33276 * 12 11 10 15 15 H 1.09004 * 109.86876 * 178.07905 * 14 12 11 16 16 C 1.54317 * 109.88611 * 299.09464 * 14 12 11 17 17 C 1.55158 * 102.94400 * 141.61218 * 16 14 12 18 18 C 1.54911 * 101.58016 * 324.49939 * 17 16 14 19 19 N 1.47017 * 109.88417 * 57.07008 * 14 12 11 20 20 C 1.36937 * 125.65110 * 61.60342 * 19 14 12 21 21 H 1.07994 * 120.00387 * 11.67468 * 20 19 14 22 22 C 1.38816 * 119.99860 * 191.68058 * 20 19 14 23 23 N 1.31618 * 120.00076 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47209 * 90.00199 * 24 22 20 26 26 H 1.48503 * 109.47217 * 209.99997 * 24 22 20 27 27 H 1.48499 * 109.47362 * 329.99816 * 24 22 20 28 28 C 1.46925 * 120.63165 * 180.02562 * 8 6 5 29 29 N 1.30842 * 108.20008 * 359.60165 * 4 3 2 30 30 N 1.34946 * 126.12325 * 179.70760 * 2 1 3 31 31 H 0.97001 * 126.04304 * 359.97438 * 30 2 1 32 32 H 1.08993 * 109.47377 * 270.26789 * 1 2 3 33 33 H 1.09004 * 109.47166 * 30.27256 * 1 2 3 34 34 H 1.09009 * 109.46972 * 150.26357 * 1 2 3 35 35 H 1.08004 * 126.03986 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.47348 * 4.72131 * 5 4 3 37 37 H 1.08996 * 109.47424 * 244.71377 * 5 4 3 38 38 H 1.09007 * 109.58429 * 246.15337 * 9 8 6 39 39 H 1.08995 * 109.59045 * 6.43995 * 9 8 6 40 40 H 1.09002 * 109.49768 * 174.58098 * 10 9 8 41 41 H 1.08996 * 109.49516 * 294.64841 * 10 9 8 42 42 H 1.08996 * 109.45996 * 178.61351 * 11 10 9 43 43 H 1.08998 * 109.46004 * 58.65314 * 11 10 9 44 44 H 1.09002 * 110.72191 * 259.97773 * 16 14 12 45 45 H 1.09001 * 110.71723 * 23.24966 * 16 14 12 46 46 H 1.08993 * 111.00302 * 82.57410 * 17 16 14 47 47 H 1.08997 * 111.00399 * 206.38886 * 17 16 14 48 48 H 1.08997 * 110.36389 * 155.84496 * 18 17 16 49 49 H 1.09002 * 110.36694 * 278.17331 * 18 17 16 50 50 H 0.97000 * 120.00194 * 179.97438 * 23 22 20 51 51 H 1.09001 * 109.58515 * 113.84764 * 28 8 6 52 52 H 1.08997 * 109.58671 * 353.42217 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7389 1.1794 1.1582 7 8 5.4105 0.2923 1.9174 8 7 6.8949 1.8431 1.3573 9 6 7.3058 2.9204 0.4466 10 6 7.5974 4.1783 1.2709 11 6 8.6248 3.8460 2.3554 12 6 8.0542 2.7772 3.2906 13 1 7.1293 3.1414 3.7378 14 6 9.0683 2.4692 4.3940 15 1 8.6539 1.7332 5.0831 16 6 10.3733 1.9294 3.7719 17 6 11.4730 2.5799 4.6521 18 6 10.8493 3.9650 4.9559 19 7 9.4050 3.7014 5.1218 20 6 8.5257 4.4744 5.8321 21 1 7.5351 4.1037 6.0504 22 6 8.9075 5.7346 6.2714 23 7 10.1145 6.1867 6.0049 24 14 7.7078 6.7894 7.2397 25 1 7.8618 6.5098 8.6900 26 1 7.9887 8.2242 6.9797 27 1 6.3193 6.4728 6.8192 28 6 7.7680 1.5031 2.4890 29 7 3.6334 -0.6525 0.0033 30 7 2.3026 -1.0900 0.0056 31 1 2.0055 -2.0134 0.0106 32 1 -0.3634 0.0048 1.0276 33 1 -0.3634 0.8876 -0.5181 34 1 -0.3633 -0.8924 -0.5098 35 1 1.9741 2.1211 0.0004 36 1 4.5484 2.5822 0.0771 37 1 5.4034 1.3961 -0.9381 38 1 8.2045 2.6202 -0.0924 39 1 6.5046 3.1240 -0.2637 40 1 7.9952 4.9562 0.6191 41 1 6.6767 4.5296 1.7366 42 1 8.8524 4.7452 2.9277 43 1 9.5364 3.4717 1.8896 44 1 10.4142 0.8426 3.8441 45 1 10.4683 2.2519 2.7350 46 1 11.6267 2.0111 5.5690 47 1 12.4060 2.6839 4.0982 48 1 11.2667 4.3755 5.8753 49 1 11.0183 4.6480 4.1233 50 1 10.3813 7.0675 6.3116 51 1 8.7043 1.0877 2.1162 52 1 7.2707 0.7732 3.1278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963284565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:32 Heat of formation + Delta-G solvation = 56.536809 kcal Electronic energy + Delta-G solvation = -31348.264232 eV Core-core repulsion = 27349.587734 eV Total energy + Delta-G solvation = -3998.676498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41489 -39.99615 -38.23284 -36.29475 -33.58724 -32.82980 -32.23196 -31.73029 -31.13661 -29.36070 -28.80816 -27.17762 -26.53824 -24.89733 -24.49024 -22.53452 -21.49647 -20.84398 -20.46099 -19.91042 -18.64161 -18.22748 -17.57562 -17.00236 -16.51741 -15.64910 -15.33353 -15.10900 -14.90511 -14.52173 -14.09793 -14.01862 -13.94029 -13.83058 -13.62068 -13.32794 -13.18629 -12.99988 -12.85328 -12.65606 -12.39380 -12.08519 -12.01889 -11.97282 -11.75819 -11.50318 -11.07499 -10.84994 -10.81388 -10.66137 -10.63217 -10.31970 -10.17840 -10.06308 -9.87452 -9.76141 -9.60222 -9.57942 -9.38102 -9.29874 -8.72246 -8.54425 -8.32633 -6.73772 -5.68957 -3.03102 1.74701 2.55191 2.71482 2.83143 3.24929 3.41519 3.47640 3.48656 4.35183 4.44092 4.52525 4.70804 4.76773 4.98926 5.03588 5.11962 5.21430 5.24662 5.30451 5.31883 5.45786 5.47613 5.51774 5.54826 5.59831 5.64805 5.79063 5.82001 5.85609 5.89864 5.95063 5.97397 6.07806 6.16089 6.28164 6.34744 6.42598 6.47510 6.53811 6.61758 6.68081 6.76294 6.86627 7.05772 7.10242 7.14875 7.22349 7.58877 7.61131 7.62630 7.66588 7.86241 8.33427 8.38339 9.25492 9.86852 10.55735 11.42239 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002647 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.609128 B =10576.802362 C =11606.105836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.080 3.920 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.060 4.060 6 C 0.515 3.485 7 O -0.529 6.529 8 N -0.609 5.609 9 C 0.107 3.893 10 C -0.135 4.135 11 C -0.104 4.104 12 C -0.104 4.104 13 H 0.069 0.931 14 C 0.167 3.833 15 H 0.032 0.968 16 C -0.129 4.129 17 C -0.150 4.150 18 C 0.172 3.828 19 N -0.591 5.591 20 C -0.219 4.219 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.920 5.920 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.117 3.883 29 N -0.261 5.261 30 N -0.477 5.477 31 H 0.435 0.565 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.022 0.978 50 H 0.251 0.749 51 H 0.064 0.936 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.820 -9.241 -16.850 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.294 4.294 4 C -0.077 4.077 5 C -0.102 4.102 6 C 0.302 3.698 7 O -0.405 6.405 8 N -0.342 5.342 9 C -0.016 4.016 10 C -0.173 4.173 11 C -0.142 4.142 12 C -0.125 4.125 13 H 0.087 0.913 14 C 0.059 3.941 15 H 0.050 0.950 16 C -0.167 4.167 17 C -0.189 4.189 18 C 0.047 3.953 19 N -0.315 5.315 20 C -0.347 4.347 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.567 5.567 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 C -0.005 4.005 29 N -0.084 5.084 30 N -0.185 5.185 31 H 0.279 0.721 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.092 0.908 49 H 0.040 0.960 50 H 0.061 0.939 51 H 0.082 0.918 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.279 -10.525 -16.321 22.458 hybrid contribution -1.291 1.015 0.500 1.716 sum -12.570 -9.510 -15.821 22.332 Atomic orbital electron populations 1.20445 0.87342 1.03759 1.03470 1.21072 0.94533 0.87814 1.01427 1.21094 0.91403 0.99214 1.17711 1.21533 0.94503 0.91577 1.00081 1.20085 0.91941 0.99202 0.98938 1.20279 0.81186 0.82025 0.86311 1.90725 1.72199 1.30741 1.46860 1.48139 1.21220 1.35764 1.29105 1.21794 1.00319 0.87572 0.91903 1.21948 1.00887 0.96087 0.98387 1.21467 0.96306 1.00844 0.95567 1.21954 1.00582 0.93802 0.96176 0.91272 1.20867 0.92226 0.90081 0.90946 0.95013 1.22679 0.96108 0.98620 0.99292 1.23009 0.96922 1.00352 0.98573 1.21514 0.83254 0.90014 1.00472 1.44552 1.04843 1.25222 1.56854 1.18957 0.94839 0.95071 1.25878 0.90915 1.24797 0.97030 0.96946 1.01478 1.69928 1.17663 1.18599 1.50515 0.86205 0.80402 0.79903 0.79812 1.21734 1.21767 1.20748 1.21784 0.93012 0.98394 0.87346 1.77413 0.95510 1.12467 1.22981 1.46326 1.04218 1.08132 1.59871 0.72103 0.90140 0.89572 0.91222 0.83540 0.86991 0.87433 0.91492 0.90359 0.91263 0.91703 0.89349 0.92795 0.92628 0.91524 0.92540 0.92636 0.90766 0.95999 0.93857 0.91778 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.43 36.01 0.38 -0.11 16 2 C 0.08 0.77 7.21 -82.26 -0.59 0.18 16 3 C -0.26 -2.94 10.64 -40.02 -0.43 -3.36 16 4 C 0.09 1.20 6.02 -82.41 -0.50 0.70 16 5 C -0.06 -0.68 4.62 -29.04 -0.13 -0.81 16 6 C 0.52 7.87 7.69 -10.98 -0.08 7.78 16 7 O -0.53 -10.36 14.97 5.55 0.08 -10.27 16 8 N -0.61 -8.66 2.97 -172.74 -0.51 -9.17 16 9 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 10 C -0.13 -1.80 6.08 -26.61 -0.16 -1.96 16 11 C -0.10 -1.77 4.75 -26.69 -0.13 -1.90 16 12 C -0.10 -1.87 2.10 -90.48 -0.19 -2.06 16 13 H 0.07 1.45 8.07 -51.93 -0.42 1.03 16 14 C 0.17 3.36 2.96 -66.96 -0.20 3.17 16 15 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 16 C -0.13 -2.22 5.09 -24.90 -0.13 -2.35 16 17 C -0.15 -2.81 7.09 -24.58 -0.17 -2.98 16 18 C 0.17 4.04 5.49 -2.35 -0.01 4.03 16 19 N -0.59 -14.36 2.25 -162.32 -0.37 -14.72 16 20 C -0.22 -5.91 9.88 -15.06 -0.15 -6.06 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 22 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 23 N -0.92 -26.31 10.48 55.49 0.58 -25.73 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.12 1.87 5.55 -3.69 -0.02 1.85 16 29 N -0.26 -3.81 12.04 33.67 0.41 -3.40 16 30 N -0.48 -5.17 7.36 33.48 0.25 -4.92 16 31 H 0.44 3.30 8.96 -182.61 -1.64 1.66 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 35 H 0.15 1.29 8.06 -52.48 -0.42 0.86 16 36 H 0.11 0.98 7.67 -51.93 -0.40 0.58 16 37 H 0.11 0.96 7.94 -51.93 -0.41 0.55 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.09 1.89 7.50 -51.93 -0.39 1.50 16 43 H 0.05 0.87 6.18 -51.93 -0.32 0.54 16 44 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 1.07 5.53 -51.93 -0.29 0.79 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 1.98 6.72 -51.93 -0.35 1.63 16 49 H 0.02 0.55 8.12 -51.93 -0.42 0.13 16 50 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 51 H 0.06 0.95 6.84 -51.93 -0.36 0.60 16 52 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -34.57 400.45 -11.05 -45.62 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -9.86 Total: 2.57 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.64 Total: -2.98 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.35 Total: -57.95 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.27 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.57 -11.05 -45.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963284565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.154 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds