Wall clock time and date at job start Wed Apr 1 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35312 * 126.12912 * 2 1 4 4 C 1.39863 * 107.92307 * 180.14534 * 3 2 1 5 5 C 1.50696 * 125.90108 * 179.86067 * 4 3 2 6 6 C 1.50703 * 109.47123 * 124.71407 * 5 4 3 7 7 O 1.21289 * 119.99903 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00452 * 180.02562 * 6 5 4 9 9 C 1.46925 * 120.62471 * 0.02687 * 8 6 5 10 10 C 1.53196 * 108.77357 * 126.36998 * 9 8 6 11 11 C 1.53044 * 109.31377 * 54.63254 * 10 9 8 12 12 C 1.53044 * 109.53716 * 298.63661 * 11 10 9 13 13 H 1.09003 * 109.49363 * 301.41238 * 12 11 10 14 14 C 1.52997 * 109.52158 * 181.33276 * 12 11 10 15 15 H 1.09004 * 109.86876 * 178.07905 * 14 12 11 16 16 C 1.54317 * 109.88611 * 299.09464 * 14 12 11 17 17 C 1.55158 * 102.94400 * 141.61218 * 16 14 12 18 18 C 1.54911 * 101.58016 * 324.49939 * 17 16 14 19 19 N 1.47017 * 109.88417 * 57.07008 * 14 12 11 20 20 C 1.36937 * 125.65110 * 61.60342 * 19 14 12 21 21 H 1.07994 * 120.00387 * 11.67468 * 20 19 14 22 22 C 1.38816 * 119.99860 * 191.68058 * 20 19 14 23 23 N 1.31618 * 120.00076 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47209 * 90.00199 * 24 22 20 26 26 H 1.48503 * 109.47217 * 209.99997 * 24 22 20 27 27 H 1.48499 * 109.47362 * 329.99816 * 24 22 20 28 28 C 1.46925 * 120.63165 * 180.02562 * 8 6 5 29 29 N 1.30842 * 108.20008 * 359.60165 * 4 3 2 30 30 N 1.34946 * 126.12325 * 179.70760 * 2 1 3 31 31 H 0.97001 * 126.04304 * 359.97438 * 30 2 1 32 32 H 1.08993 * 109.47377 * 270.26789 * 1 2 3 33 33 H 1.09004 * 109.47166 * 30.27256 * 1 2 3 34 34 H 1.09009 * 109.46972 * 150.26357 * 1 2 3 35 35 H 1.08004 * 126.03986 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.47348 * 4.72131 * 5 4 3 37 37 H 1.08996 * 109.47424 * 244.71377 * 5 4 3 38 38 H 1.09007 * 109.58429 * 246.15337 * 9 8 6 39 39 H 1.08995 * 109.59045 * 6.43995 * 9 8 6 40 40 H 1.09002 * 109.49768 * 174.58098 * 10 9 8 41 41 H 1.08996 * 109.49516 * 294.64841 * 10 9 8 42 42 H 1.08996 * 109.45996 * 178.61351 * 11 10 9 43 43 H 1.08998 * 109.46004 * 58.65314 * 11 10 9 44 44 H 1.09002 * 110.72191 * 259.97773 * 16 14 12 45 45 H 1.09001 * 110.71723 * 23.24966 * 16 14 12 46 46 H 1.08993 * 111.00302 * 82.57410 * 17 16 14 47 47 H 1.08997 * 111.00399 * 206.38886 * 17 16 14 48 48 H 1.08997 * 110.36389 * 155.84496 * 18 17 16 49 49 H 1.09002 * 110.36694 * 278.17331 * 18 17 16 50 50 H 0.97000 * 120.00194 * 179.97438 * 23 22 20 51 51 H 1.09001 * 109.58515 * 113.84764 * 28 8 6 52 52 H 1.08997 * 109.58671 * 353.42217 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 6 5.7389 1.1794 1.1582 7 8 5.4105 0.2923 1.9174 8 7 6.8949 1.8431 1.3573 9 6 7.3058 2.9204 0.4466 10 6 7.5974 4.1783 1.2709 11 6 8.6248 3.8460 2.3554 12 6 8.0542 2.7772 3.2906 13 1 7.1293 3.1414 3.7378 14 6 9.0683 2.4692 4.3940 15 1 8.6539 1.7332 5.0831 16 6 10.3733 1.9294 3.7719 17 6 11.4730 2.5799 4.6521 18 6 10.8493 3.9650 4.9559 19 7 9.4050 3.7014 5.1218 20 6 8.5257 4.4744 5.8321 21 1 7.5351 4.1037 6.0504 22 6 8.9075 5.7346 6.2714 23 7 10.1145 6.1867 6.0049 24 14 7.7078 6.7894 7.2397 25 1 7.8618 6.5098 8.6900 26 1 7.9887 8.2242 6.9797 27 1 6.3193 6.4728 6.8192 28 6 7.7680 1.5031 2.4890 29 7 3.6334 -0.6525 0.0033 30 7 2.3026 -1.0900 0.0056 31 1 2.0055 -2.0134 0.0106 32 1 -0.3634 0.0048 1.0276 33 1 -0.3634 0.8876 -0.5181 34 1 -0.3633 -0.8924 -0.5098 35 1 1.9741 2.1211 0.0004 36 1 4.5484 2.5822 0.0771 37 1 5.4034 1.3961 -0.9381 38 1 8.2045 2.6202 -0.0924 39 1 6.5046 3.1240 -0.2637 40 1 7.9952 4.9562 0.6191 41 1 6.6767 4.5296 1.7366 42 1 8.8524 4.7452 2.9277 43 1 9.5364 3.4717 1.8896 44 1 10.4142 0.8426 3.8441 45 1 10.4683 2.2519 2.7350 46 1 11.6267 2.0111 5.5690 47 1 12.4060 2.6839 4.0982 48 1 11.2667 4.3755 5.8753 49 1 11.0183 4.6480 4.1233 50 1 10.3813 7.0675 6.3116 51 1 8.7043 1.0877 2.1162 52 1 7.2707 0.7732 3.1278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963284565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:31 Heat of formation + Delta-G solvation = 34.821897 kcal Electronic energy + Delta-G solvation = -31349.205861 eV Core-core repulsion = 27349.587734 eV Total energy + Delta-G solvation = -3999.618127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.23728 -41.21726 -39.72853 -37.68248 -34.75908 -34.35146 -33.63646 -32.56738 -32.32017 -31.20977 -29.84198 -28.03545 -27.80715 -26.46761 -26.07972 -23.89654 -22.72777 -22.03923 -21.60905 -21.23125 -20.00825 -19.45625 -18.62518 -18.36664 -17.92514 -17.01444 -16.65874 -16.43482 -16.21323 -15.81566 -15.68658 -15.45842 -15.03938 -14.73553 -14.57630 -14.49625 -14.21461 -13.95180 -13.83140 -13.71976 -13.61399 -13.53028 -13.24896 -13.15531 -13.06690 -12.87299 -12.77430 -12.72230 -12.42067 -12.01916 -11.90328 -11.79030 -11.70660 -11.51827 -11.48909 -11.44028 -11.22091 -10.91173 -10.79426 -10.62718 -10.22947 -9.54240 -9.50183 -8.75046 -7.81648 -5.15906 0.96054 1.43720 1.44217 1.52874 1.65002 1.73561 2.00071 2.20848 2.50402 3.35466 3.54060 3.64035 3.68732 3.83698 3.96282 3.99881 4.15941 4.17369 4.19013 4.29399 4.33913 4.38014 4.44774 4.48412 4.49071 4.58613 4.65352 4.75173 4.76540 4.78777 4.85815 4.87469 4.89885 4.92202 4.99606 5.10131 5.11362 5.23295 5.24355 5.27815 5.36115 5.49091 5.50961 5.59854 5.63414 5.69906 5.71895 5.75265 5.84694 6.29503 6.48200 6.50722 6.77955 7.15833 7.24860 7.84239 8.51440 9.28100 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013685 B = 0.002647 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.609128 B =10576.802362 C =11606.105836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.087 3.913 3 C -0.288 4.288 4 C 0.073 3.927 5 C -0.054 4.054 6 C 0.510 3.490 7 O -0.582 6.582 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.130 4.130 11 C -0.096 4.096 12 C -0.090 4.090 13 H 0.029 0.971 14 C 0.157 3.843 15 H 0.014 0.986 16 C -0.115 4.115 17 C -0.138 4.138 18 C 0.178 3.822 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.063 0.937 22 C -0.057 4.057 23 N -0.944 5.944 24 Si 0.964 3.036 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.276 1.276 28 C 0.128 3.872 29 N -0.314 5.314 30 N -0.477 5.477 31 H 0.445 0.555 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.166 0.834 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.048 0.952 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.034 0.966 49 H 0.001 0.999 50 H 0.246 0.754 51 H 0.086 0.914 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -9.753 -19.789 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C -0.317 4.317 4 C -0.094 4.094 5 C -0.094 4.094 6 C 0.298 3.702 7 O -0.461 6.461 8 N -0.341 5.341 9 C -0.013 4.013 10 C -0.168 4.168 11 C -0.134 4.134 12 C -0.111 4.111 13 H 0.047 0.953 14 C 0.049 3.951 15 H 0.032 0.968 16 C -0.152 4.152 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.330 5.330 20 C -0.354 4.354 21 H 0.081 0.919 22 C -0.251 4.251 23 N -0.593 5.593 24 Si 0.794 3.206 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.201 1.201 28 C 0.005 3.995 29 N -0.137 5.137 30 N -0.187 5.187 31 H 0.291 0.709 32 H 0.105 0.895 33 H 0.121 0.879 34 H 0.107 0.893 35 H 0.184 0.816 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.110 0.890 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.103 0.897 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.055 0.945 51 H 0.104 0.896 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.318 -11.050 -19.293 25.418 hybrid contribution -1.024 1.132 1.462 2.113 sum -13.341 -9.918 -17.831 24.378 Atomic orbital electron populations 1.20594 0.84212 1.05538 1.04348 1.21754 0.96357 0.87011 0.99099 1.21471 0.90919 1.00678 1.18640 1.21956 0.95948 0.91559 0.99904 1.20210 0.90909 1.00295 0.98034 1.21035 0.81250 0.81130 0.86748 1.90702 1.73310 1.33147 1.48971 1.48238 1.20783 1.36354 1.28739 1.22059 1.02944 0.85025 0.91310 1.21906 0.98959 0.98183 0.97742 1.21323 0.98180 0.97985 0.95876 1.21696 0.98044 0.95400 0.95991 0.95270 1.21075 0.94699 0.88062 0.91225 0.96784 1.22648 0.93026 1.00060 0.99510 1.22892 0.98287 0.96984 0.99437 1.21298 0.83183 0.92502 0.97712 1.44724 1.05105 1.25910 1.57305 1.19117 0.94894 0.95605 1.25781 0.91896 1.25462 0.98541 0.98091 1.02994 1.70119 1.18953 1.18473 1.51714 0.85287 0.78803 0.78176 0.78356 1.21702 1.21743 1.20145 1.21496 0.94054 0.96224 0.87759 1.77311 0.97652 1.13619 1.25133 1.46387 1.03571 1.09168 1.59620 0.70936 0.89516 0.87944 0.89334 0.81607 0.84108 0.84509 0.89047 0.86412 0.88839 0.93301 0.94446 0.91220 0.89794 0.89677 0.92491 0.89680 0.94719 0.98108 0.94487 0.89619 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.43 71.24 0.74 0.04 16 2 C 0.09 1.53 7.21 41.41 0.30 1.82 16 3 C -0.29 -5.89 10.64 21.99 0.23 -5.65 16 4 C 0.07 1.84 6.02 43.10 0.26 2.10 16 5 C -0.05 -1.06 4.62 29.10 0.13 -0.93 16 6 C 0.51 14.93 7.69 87.66 0.67 15.60 16 7 O -0.58 -23.10 14.97 -3.06 -0.05 -23.15 16 8 N -0.61 -16.14 2.97 -818.81 -2.43 -18.57 16 9 C 0.11 1.98 6.34 86.36 0.55 2.52 16 10 C -0.13 -3.18 6.08 30.67 0.19 -2.99 16 11 C -0.10 -3.22 4.75 30.62 0.15 -3.07 16 12 C -0.09 -3.31 2.10 -10.70 -0.02 -3.33 16 13 H 0.03 1.28 8.07 -2.39 -0.02 1.26 16 14 C 0.16 6.42 2.96 45.34 0.13 6.56 16 15 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 16 C -0.11 -3.73 5.09 31.78 0.16 -3.56 16 17 C -0.14 -4.98 7.09 31.99 0.23 -4.76 16 18 C 0.18 8.62 5.49 86.79 0.48 9.10 16 19 N -0.61 -30.68 2.25 -667.45 -1.50 -32.18 16 20 C -0.22 -12.70 9.88 84.03 0.83 -11.87 16 21 H 0.06 3.59 7.83 -2.91 -0.02 3.57 16 22 C -0.06 -3.29 5.48 84.86 0.46 -2.82 16 23 N -0.94 -56.28 10.48 21.65 0.23 -56.05 16 24 Si 0.96 46.73 29.55 68.60 2.03 48.76 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 C 0.13 4.00 5.55 86.38 0.48 4.48 16 29 N -0.31 -9.05 12.04 -47.39 -0.57 -9.62 16 30 N -0.48 -10.00 7.36 -48.00 -0.35 -10.36 16 31 H 0.45 6.51 8.96 -213.33 -1.91 4.60 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.14 1.92 7.67 -2.39 -0.02 1.91 16 37 H 0.14 1.89 7.94 -2.39 -0.02 1.87 16 38 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.12 1.30 5.93 -2.39 -0.01 1.29 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 41 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.04 1.64 7.50 -2.39 -0.02 1.62 16 43 H 0.07 2.09 6.18 -2.39 -0.01 2.07 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.08 2.46 5.53 -2.39 -0.01 2.45 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 48 H 0.03 1.93 6.72 -2.39 -0.02 1.92 16 49 H 0.00 0.05 8.12 -2.39 -0.02 0.03 16 50 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 51 H 0.09 2.32 6.84 -2.39 -0.02 2.30 16 52 H 0.06 2.19 7.00 -2.39 -0.02 2.17 16 Total: -1.00 -82.41 400.45 2.33 -80.07 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.99 Total: 17.86 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.97 Total: 3.23 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -4.63 Total: -126.78 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -82.41 2.33 -80.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963284565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.895 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds