Wall clock time and date at job start Wed Apr 1 2020 03:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12555 * 2 1 4 4 C 1.39867 * 107.91889 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.89974 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47193 * 125.00005 * 5 4 3 7 7 O 1.21276 * 120.00021 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99892 * 180.02562 * 6 5 4 9 9 C 1.46924 * 120.63307 * 0.02562 * 8 6 5 10 10 C 1.53185 * 108.77659 * 126.41423 * 9 8 6 11 11 C 1.53044 * 109.31355 * 54.63306 * 10 9 8 12 12 C 1.53038 * 109.53870 * 298.63393 * 11 10 9 13 13 H 1.08996 * 109.50050 * 301.38381 * 12 11 10 14 14 C 1.52995 * 109.49833 * 181.31286 * 12 11 10 15 15 H 1.09006 * 110.00103 * 305.00046 * 14 12 11 16 16 C 1.54327 * 109.99422 * 183.95702 * 14 12 11 17 17 C 1.55157 * 103.02278 * 218.66680 * 16 14 12 18 18 C 1.54905 * 101.57966 * 35.30684 * 17 16 14 19 19 N 1.47024 * 109.88280 * 66.08989 * 14 12 11 20 20 C 1.36937 * 125.64839 * 298.39938 * 19 14 12 21 21 H 1.08004 * 119.99859 * 331.82505 * 20 19 14 22 22 C 1.38810 * 120.00016 * 151.82500 * 20 19 14 23 23 N 1.31614 * 120.00134 * 332.30415 * 22 20 19 24 24 Si 1.86803 * 119.99704 * 152.30513 * 22 20 19 25 25 H 1.48507 * 109.47265 * 90.00330 * 24 22 20 26 26 H 1.48491 * 109.47360 * 329.99934 * 24 22 20 27 27 H 1.48502 * 109.47206 * 209.99812 * 24 22 20 28 28 C 1.46927 * 120.62574 * 180.02562 * 8 6 5 29 29 N 1.30841 * 108.20261 * 0.25995 * 4 3 2 30 30 N 1.34951 * 126.12705 * 179.97438 * 2 1 3 31 31 H 0.96999 * 126.03642 * 0.03753 * 30 2 1 32 32 H 1.09000 * 109.46868 * 90.00661 * 1 2 3 33 33 H 1.09004 * 109.47251 * 210.00651 * 1 2 3 34 34 H 1.09002 * 109.47384 * 330.00402 * 1 2 3 35 35 H 1.08000 * 126.03951 * 359.97438 * 3 2 1 36 36 H 1.09000 * 109.47319 * 4.99973 * 5 4 3 37 37 H 1.09004 * 109.47585 * 245.00001 * 5 4 3 38 38 H 1.08999 * 109.58457 * 6.62226 * 9 8 6 39 39 H 1.09006 * 109.70082 * 246.27200 * 9 8 6 40 40 H 1.09000 * 109.49816 * 294.68363 * 10 9 8 41 41 H 1.08995 * 109.52490 * 174.60229 * 10 9 8 42 42 H 1.09003 * 109.45899 * 178.61311 * 11 10 9 43 43 H 1.08997 * 109.44686 * 58.65281 * 11 10 9 44 44 H 1.09002 * 110.85090 * 100.20209 * 16 14 12 45 45 H 1.09000 * 110.66905 * 337.05051 * 16 14 12 46 46 H 1.08997 * 111.00699 * 277.23404 * 17 16 14 47 47 H 1.09001 * 111.03746 * 153.39450 * 17 16 14 48 48 H 1.08997 * 110.37061 * 204.14905 * 18 17 16 49 49 H 1.09006 * 110.36932 * 81.83174 * 18 17 16 50 50 H 0.96996 * 120.00343 * 353.75821 * 23 22 20 51 51 H 1.08999 * 109.58878 * 113.79998 * 28 8 6 52 52 H 1.08996 * 109.59077 * 353.36822 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 6 4.8542 1.5395 0.0003 6 6 5.7387 1.1746 1.1646 7 8 5.4103 0.2845 1.9199 8 7 6.8947 1.8376 1.3664 9 6 7.3058 2.9186 0.4603 10 6 7.5983 4.1728 1.2898 11 6 8.6260 3.8352 2.3724 12 6 8.0554 2.7628 3.3032 13 1 7.1311 3.1256 3.7529 14 6 9.0704 2.4496 4.4043 15 1 10.0263 2.1694 3.9615 16 6 8.5487 1.2996 5.2914 17 6 8.9882 1.7298 6.7158 18 6 8.8278 3.2686 6.6393 19 7 9.2462 3.6241 5.2711 20 6 9.7151 4.8473 4.8723 21 1 10.3939 4.9187 4.0353 22 6 9.3181 5.9954 5.5439 23 7 8.1524 6.0311 6.1540 24 14 10.4382 7.4898 5.5817 25 1 10.1364 8.3643 4.4200 26 1 11.8545 7.0487 5.5144 27 1 10.2142 8.2447 6.8408 28 6 7.7677 1.4929 2.4967 29 7 3.6333 -0.6524 -0.0047 30 7 2.3026 -1.0900 0.0005 31 1 2.0055 -2.0134 0.0004 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 1.9740 2.1211 -0.0004 36 1 4.5484 2.5819 0.0890 37 1 5.4035 1.4001 -0.9309 38 1 6.5033 3.1274 -0.2472 39 1 8.2033 2.6219 -0.0825 40 1 6.6781 4.5222 1.7580 41 1 7.9959 4.9537 0.6416 42 1 8.8544 4.7319 2.9485 43 1 9.5371 3.4625 1.9044 44 1 9.0137 0.3537 5.0136 45 1 7.4629 1.2272 5.2282 46 1 10.0257 1.4541 6.9046 47 1 8.3293 1.3055 7.4735 48 1 9.4730 3.7542 7.3714 49 1 7.7876 3.5503 6.8032 50 1 7.5326 5.2910 6.0594 51 1 8.7037 1.0782 2.1224 52 1 7.2700 0.7611 3.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963284566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:35 Heat of formation + Delta-G solvation = 49.294305 kcal Electronic energy + Delta-G solvation = -31458.638911 eV Core-core repulsion = 27459.648354 eV Total energy + Delta-G solvation = -3998.990556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.40688 -39.95265 -38.19917 -36.45480 -33.58776 -32.88214 -32.64062 -31.72232 -31.09060 -29.27568 -28.76793 -27.17294 -26.69427 -24.91468 -24.28177 -22.61006 -21.29570 -20.69675 -20.08856 -19.89082 -19.18493 -18.50032 -17.59344 -17.29958 -16.81935 -15.72711 -15.35644 -15.27366 -14.82121 -14.34834 -14.03408 -14.00758 -13.81352 -13.71369 -13.60307 -13.32222 -13.13322 -13.06495 -12.83448 -12.76539 -12.55188 -12.30929 -12.16698 -11.98071 -11.83727 -11.61186 -10.96810 -10.85322 -10.67727 -10.65331 -10.64578 -10.24120 -10.22556 -10.09561 -9.99428 -9.81476 -9.67501 -9.50701 -9.40741 -9.28103 -8.71509 -8.36961 -8.26579 -6.82036 -6.04021 -3.18840 1.75204 2.56000 2.72150 2.83915 3.26354 3.48510 3.54290 3.68863 4.36014 4.45182 4.58603 4.71936 4.78437 5.01430 5.05402 5.11253 5.20682 5.24478 5.28387 5.32593 5.38309 5.46856 5.49810 5.52422 5.58536 5.60706 5.69121 5.74810 5.85199 5.87188 5.96540 5.97503 6.10409 6.21751 6.23805 6.30272 6.36518 6.43655 6.48904 6.52304 6.59035 6.68162 6.82842 6.92900 7.03263 7.15429 7.15538 7.22586 7.36117 7.60052 7.63261 7.94854 8.38755 8.53540 9.06412 9.82873 10.47558 11.22420 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.002583 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.327702 B =10839.308268 C =11301.144961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.080 3.920 3 C -0.265 4.265 4 C 0.091 3.909 5 C -0.060 4.060 6 C 0.516 3.484 7 O -0.530 6.530 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.133 4.133 11 C -0.125 4.125 12 C -0.097 4.097 13 H 0.066 0.934 14 C 0.165 3.835 15 H 0.034 0.966 16 C -0.129 4.129 17 C -0.137 4.137 18 C 0.142 3.858 19 N -0.590 5.590 20 C -0.328 4.328 21 H 0.060 0.940 22 C -0.022 4.022 23 N -0.907 5.907 24 Si 1.061 2.939 25 H -0.294 1.294 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.116 3.884 29 N -0.262 5.262 30 N -0.477 5.477 31 H 0.435 0.565 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.147 0.853 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.114 0.886 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.044 0.956 49 H 0.025 0.975 50 H 0.270 0.730 51 H 0.059 0.941 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 -9.788 -14.648 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.294 4.294 4 C -0.076 4.076 5 C -0.102 4.102 6 C 0.302 3.698 7 O -0.406 6.406 8 N -0.341 5.341 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.118 4.118 13 H 0.084 0.916 14 C 0.058 3.942 15 H 0.051 0.949 16 C -0.167 4.167 17 C -0.175 4.175 18 C 0.017 3.983 19 N -0.315 5.315 20 C -0.456 4.456 21 H 0.078 0.922 22 C -0.225 4.225 23 N -0.546 5.546 24 Si 0.890 3.110 25 H -0.222 1.222 26 H -0.219 1.219 27 H -0.213 1.213 28 C -0.006 4.006 29 N -0.084 5.084 30 N -0.185 5.185 31 H 0.279 0.721 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.165 0.835 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.042 0.958 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.802 -9.671 -13.633 19.377 hybrid contribution -0.892 -1.183 -0.736 1.655 sum -10.694 -10.854 -14.369 20.944 Atomic orbital electron populations 1.20443 0.87326 1.03992 1.03242 1.21074 0.94538 0.87802 1.01436 1.21100 0.91392 0.99230 1.17668 1.21527 0.94504 0.91566 1.00043 1.20085 0.91945 0.99211 0.98937 1.20273 0.81183 0.82044 0.86272 1.90714 1.72230 1.30634 1.47060 1.48124 1.21197 1.35547 1.29280 1.21814 1.00223 0.87626 0.92007 1.21935 1.00920 0.95934 0.98354 1.21892 0.95919 1.02499 0.95869 1.21903 1.00136 0.93775 0.95973 0.91601 1.20983 0.94441 0.88338 0.90449 0.94871 1.22628 1.00431 0.97573 0.96041 1.22775 1.00263 0.98355 0.96142 1.21507 0.97788 0.90767 0.88233 1.44566 1.76276 1.08456 1.02162 1.19505 1.23657 0.83012 1.19413 0.92224 1.25795 0.98008 0.99501 0.99218 1.70715 1.05220 1.33247 1.45427 0.83615 0.75217 0.75667 0.76454 1.22192 1.21891 1.21286 1.21802 0.92911 0.98556 0.87363 1.77406 0.95523 1.12454 1.23057 1.46322 1.04211 1.08123 1.59888 0.72111 0.90232 0.91162 0.89534 0.83526 0.86980 0.87445 0.90447 0.91555 0.91845 0.91281 0.86801 0.93558 0.92234 0.91834 0.92048 0.92291 0.93756 0.95769 0.91890 0.92272 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.51 10.43 36.00 0.38 -0.13 16 2 C 0.08 0.79 7.21 -82.26 -0.59 0.20 16 3 C -0.26 -3.02 10.64 -40.01 -0.43 -3.44 16 4 C 0.09 1.24 6.01 -82.41 -0.50 0.74 16 5 C -0.06 -0.71 4.63 -29.04 -0.13 -0.84 16 6 C 0.52 8.16 7.69 -10.98 -0.08 8.08 16 7 O -0.53 -10.57 14.98 5.56 0.08 -10.49 16 8 N -0.61 -9.12 2.97 -172.79 -0.51 -9.63 16 9 C 0.11 1.28 6.34 -3.72 -0.02 1.26 16 10 C -0.13 -1.93 6.08 -26.61 -0.16 -2.09 16 11 C -0.12 -2.26 4.69 -26.69 -0.13 -2.39 16 12 C -0.10 -1.82 1.96 -90.52 -0.18 -2.00 16 13 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 14 C 0.17 3.37 2.82 -66.95 -0.19 3.18 16 15 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.13 -2.34 5.45 -24.89 -0.14 -2.48 16 17 C -0.14 -2.56 7.09 -24.59 -0.17 -2.74 16 18 C 0.14 3.31 5.71 -2.53 -0.01 3.30 16 19 N -0.59 -14.28 2.88 -162.58 -0.47 -14.75 16 20 C -0.33 -8.62 7.14 -15.06 -0.11 -8.72 16 21 H 0.06 1.57 7.23 -52.48 -0.38 1.19 16 22 C -0.02 -0.59 5.13 -17.43 -0.09 -0.68 16 23 N -0.91 -26.60 13.07 55.49 0.73 -25.88 16 24 Si 1.06 24.65 30.00 -169.99 -5.10 19.56 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.12 1.94 5.29 -3.73 -0.02 1.92 16 29 N -0.26 -3.89 12.06 33.67 0.41 -3.49 16 30 N -0.48 -5.28 7.36 33.48 0.25 -5.03 16 31 H 0.44 3.38 8.96 -182.61 -1.64 1.74 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.11 1.05 7.67 -51.93 -0.40 0.65 16 37 H 0.11 1.02 7.95 -51.93 -0.41 0.60 16 38 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.11 2.53 4.78 -51.93 -0.25 2.28 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.06 1.18 7.33 -51.93 -0.38 0.80 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.02 0.61 6.87 -51.93 -0.36 0.26 16 50 H 0.27 8.06 6.54 -40.82 -0.27 7.79 16 51 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 52 H 0.09 1.58 5.89 -51.93 -0.31 1.28 16 LS Contribution 400.15 15.07 6.03 6.03 Total: -1.00 -34.60 400.15 -11.00 -45.60 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -9.83 Total: 4.92 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.57 Total: -6.85 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.39 Total: -58.77 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.10 Total: 19.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.60 -11.00 -45.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963284566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.895 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds