Wall clock time and date at job start Wed Apr 1 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35319 * 126.12555 * 2 1 4 4 C 1.39867 * 107.91889 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.89974 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47193 * 125.00005 * 5 4 3 7 7 O 1.21276 * 120.00021 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99892 * 180.02562 * 6 5 4 9 9 C 1.46924 * 120.63307 * 0.02562 * 8 6 5 10 10 C 1.53185 * 108.77659 * 126.41423 * 9 8 6 11 11 C 1.53044 * 109.31355 * 54.63306 * 10 9 8 12 12 C 1.53038 * 109.53870 * 298.63393 * 11 10 9 13 13 H 1.08996 * 109.50050 * 301.38381 * 12 11 10 14 14 C 1.52995 * 109.49833 * 181.31286 * 12 11 10 15 15 H 1.09006 * 110.00103 * 305.00046 * 14 12 11 16 16 C 1.54327 * 109.99422 * 183.95702 * 14 12 11 17 17 C 1.55157 * 103.02278 * 218.66680 * 16 14 12 18 18 C 1.54905 * 101.57966 * 35.30684 * 17 16 14 19 19 N 1.47024 * 109.88280 * 66.08989 * 14 12 11 20 20 C 1.36937 * 125.64839 * 298.39938 * 19 14 12 21 21 H 1.08004 * 119.99859 * 331.82505 * 20 19 14 22 22 C 1.38810 * 120.00016 * 151.82500 * 20 19 14 23 23 N 1.31614 * 120.00134 * 332.30415 * 22 20 19 24 24 Si 1.86803 * 119.99704 * 152.30513 * 22 20 19 25 25 H 1.48507 * 109.47265 * 90.00330 * 24 22 20 26 26 H 1.48491 * 109.47360 * 329.99934 * 24 22 20 27 27 H 1.48502 * 109.47206 * 209.99812 * 24 22 20 28 28 C 1.46927 * 120.62574 * 180.02562 * 8 6 5 29 29 N 1.30841 * 108.20261 * 0.25995 * 4 3 2 30 30 N 1.34951 * 126.12705 * 179.97438 * 2 1 3 31 31 H 0.96999 * 126.03642 * 0.03753 * 30 2 1 32 32 H 1.09000 * 109.46868 * 90.00661 * 1 2 3 33 33 H 1.09004 * 109.47251 * 210.00651 * 1 2 3 34 34 H 1.09002 * 109.47384 * 330.00402 * 1 2 3 35 35 H 1.08000 * 126.03951 * 359.97438 * 3 2 1 36 36 H 1.09000 * 109.47319 * 4.99973 * 5 4 3 37 37 H 1.09004 * 109.47585 * 245.00001 * 5 4 3 38 38 H 1.08999 * 109.58457 * 6.62226 * 9 8 6 39 39 H 1.09006 * 109.70082 * 246.27200 * 9 8 6 40 40 H 1.09000 * 109.49816 * 294.68363 * 10 9 8 41 41 H 1.08995 * 109.52490 * 174.60229 * 10 9 8 42 42 H 1.09003 * 109.45899 * 178.61311 * 11 10 9 43 43 H 1.08997 * 109.44686 * 58.65281 * 11 10 9 44 44 H 1.09002 * 110.85090 * 100.20209 * 16 14 12 45 45 H 1.09000 * 110.66905 * 337.05051 * 16 14 12 46 46 H 1.08997 * 111.00699 * 277.23404 * 17 16 14 47 47 H 1.09001 * 111.03746 * 153.39450 * 17 16 14 48 48 H 1.08997 * 110.37061 * 204.14905 * 18 17 16 49 49 H 1.09006 * 110.36932 * 81.83174 * 18 17 16 50 50 H 0.96996 * 120.00343 * 353.75821 * 23 22 20 51 51 H 1.08999 * 109.58878 * 113.79998 * 28 8 6 52 52 H 1.08996 * 109.59077 * 353.36822 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 0.0006 5 6 4.8542 1.5395 0.0003 6 6 5.7387 1.1746 1.1646 7 8 5.4103 0.2845 1.9199 8 7 6.8947 1.8376 1.3664 9 6 7.3058 2.9186 0.4603 10 6 7.5983 4.1728 1.2898 11 6 8.6260 3.8352 2.3724 12 6 8.0554 2.7628 3.3032 13 1 7.1311 3.1256 3.7529 14 6 9.0704 2.4496 4.4043 15 1 10.0263 2.1694 3.9615 16 6 8.5487 1.2996 5.2914 17 6 8.9882 1.7298 6.7158 18 6 8.8278 3.2686 6.6393 19 7 9.2462 3.6241 5.2711 20 6 9.7151 4.8473 4.8723 21 1 10.3939 4.9187 4.0353 22 6 9.3181 5.9954 5.5439 23 7 8.1524 6.0311 6.1540 24 14 10.4382 7.4898 5.5817 25 1 10.1364 8.3643 4.4200 26 1 11.8545 7.0487 5.5144 27 1 10.2142 8.2447 6.8408 28 6 7.7677 1.4929 2.4967 29 7 3.6333 -0.6524 -0.0047 30 7 2.3026 -1.0900 0.0005 31 1 2.0055 -2.0134 0.0004 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3634 0.8900 0.5138 35 1 1.9740 2.1211 -0.0004 36 1 4.5484 2.5819 0.0890 37 1 5.4035 1.4001 -0.9309 38 1 6.5033 3.1274 -0.2472 39 1 8.2033 2.6219 -0.0825 40 1 6.6781 4.5222 1.7580 41 1 7.9959 4.9537 0.6416 42 1 8.8544 4.7319 2.9485 43 1 9.5371 3.4625 1.9044 44 1 9.0137 0.3537 5.0136 45 1 7.4629 1.2272 5.2282 46 1 10.0257 1.4541 6.9046 47 1 8.3293 1.3055 7.4735 48 1 9.4730 3.7542 7.3714 49 1 7.7876 3.5503 6.8032 50 1 7.5326 5.2910 6.0594 51 1 8.7037 1.0782 2.1224 52 1 7.2700 0.7611 3.1330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963284566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:34 Heat of formation + Delta-G solvation = 27.208110 kcal Electronic energy + Delta-G solvation = -31459.596640 eV Core-core repulsion = 27459.648354 eV Total energy + Delta-G solvation = -3999.948286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.26124 -41.22466 -39.77590 -37.87366 -34.87329 -34.49274 -33.92412 -32.57583 -32.35058 -31.06227 -29.89449 -28.22870 -27.82683 -26.42744 -25.98514 -23.99532 -22.60119 -21.73575 -21.50155 -21.24556 -20.74560 -19.72296 -19.13661 -18.40082 -18.00208 -17.18428 -16.65276 -16.45082 -16.07266 -15.76474 -15.65394 -15.38135 -15.08457 -14.92987 -14.65547 -14.55799 -14.34652 -14.07459 -14.00665 -13.76337 -13.65307 -13.59013 -13.40277 -13.29634 -13.11291 -12.82139 -12.58831 -12.49043 -12.33759 -12.13401 -11.92129 -11.90801 -11.75366 -11.63428 -11.51860 -11.44926 -11.28621 -11.03974 -10.80232 -10.37081 -10.25121 -9.59745 -9.52400 -8.86026 -8.17082 -5.30037 0.93779 1.58961 1.60903 1.67332 1.69909 1.83801 1.97800 2.16868 2.67593 3.26178 3.47773 3.53541 3.62457 3.77776 3.87080 3.93144 4.04908 4.13016 4.14859 4.16320 4.21260 4.28574 4.40642 4.42286 4.44368 4.50506 4.60637 4.62545 4.72134 4.75475 4.76372 4.80546 4.84543 4.86733 4.92861 4.93753 5.01796 5.06546 5.10227 5.11428 5.24267 5.28282 5.35754 5.42444 5.56579 5.60996 5.67359 5.74647 5.89181 6.40346 6.46016 6.46468 6.75560 7.00020 7.19781 7.78134 8.44072 9.06937 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.002583 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.327702 B =10839.308268 C =11301.144961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.088 3.912 3 C -0.289 4.289 4 C 0.073 3.927 5 C -0.054 4.054 6 C 0.510 3.490 7 O -0.579 6.579 8 N -0.609 5.609 9 C 0.108 3.892 10 C -0.128 4.128 11 C -0.122 4.122 12 C -0.083 4.083 13 H 0.022 0.978 14 C 0.157 3.843 15 H 0.039 0.961 16 C -0.120 4.120 17 C -0.123 4.123 18 C 0.143 3.857 19 N -0.607 5.607 20 C -0.314 4.314 21 H 0.060 0.940 22 C -0.078 4.078 23 N -0.942 5.942 24 Si 1.109 2.891 25 H -0.280 1.280 26 H -0.277 1.277 27 H -0.297 1.297 28 C 0.127 3.873 29 N -0.313 5.313 30 N -0.476 5.476 31 H 0.446 0.554 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.165 0.835 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.053 0.947 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.019 0.981 49 H -0.006 1.006 50 H 0.251 0.749 51 H 0.076 0.924 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 -10.474 -17.354 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.318 4.318 4 C -0.094 4.094 5 C -0.095 4.095 6 C 0.299 3.701 7 O -0.459 6.459 8 N -0.342 5.342 9 C -0.014 4.014 10 C -0.166 4.166 11 C -0.159 4.159 12 C -0.104 4.104 13 H 0.041 0.959 14 C 0.051 3.949 15 H 0.056 0.944 16 C -0.157 4.157 17 C -0.161 4.161 18 C 0.017 3.983 19 N -0.332 5.332 20 C -0.443 4.443 21 H 0.077 0.923 22 C -0.275 4.275 23 N -0.584 5.584 24 Si 0.934 3.066 25 H -0.207 1.207 26 H -0.202 1.202 27 H -0.223 1.223 28 C 0.003 3.997 29 N -0.137 5.137 30 N -0.186 5.186 31 H 0.291 0.709 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.183 0.817 36 H 0.157 0.843 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.072 0.928 46 H 0.094 0.906 47 H 0.099 0.901 48 H 0.038 0.962 49 H 0.012 0.988 50 H 0.061 0.939 51 H 0.094 0.906 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.878 -10.373 -16.386 21.764 hybrid contribution -0.898 -1.042 0.088 1.378 sum -10.776 -11.415 -16.298 22.628 Atomic orbital electron populations 1.20597 0.84137 1.05121 1.04828 1.21756 0.96380 0.86963 0.99003 1.21462 0.90906 1.00685 1.18705 1.21917 0.95881 0.91577 0.99987 1.20197 0.91003 1.00243 0.98041 1.21020 0.81189 0.81173 0.86730 1.90688 1.73251 1.32883 1.49049 1.48231 1.20864 1.36132 1.28966 1.22042 1.02775 0.85102 0.91434 1.21874 0.98816 0.98109 0.97768 1.21736 0.97699 1.00043 0.96436 1.21649 0.97574 0.95262 0.95928 0.95918 1.21168 0.95129 0.87689 0.90925 0.94358 1.22590 1.00029 0.98019 0.95104 1.22699 1.01771 0.94388 0.97214 1.21421 0.95368 0.94061 0.87435 1.44834 1.76146 1.08825 1.03395 1.19693 1.22218 0.83910 1.18482 0.92259 1.27046 0.98455 1.02363 0.99597 1.70844 1.06350 1.32929 1.48232 0.82953 0.74297 0.73009 0.76312 1.20664 1.20200 1.22344 1.21512 0.93828 0.96500 0.87824 1.77302 0.97695 1.13513 1.25178 1.46375 1.03521 1.09168 1.59579 0.70880 0.88258 0.89795 0.88625 0.81706 0.84306 0.84589 0.86499 0.89278 0.93845 0.88890 0.91256 0.92326 0.89101 0.92775 0.90558 0.90075 0.96239 0.98784 0.93932 0.90552 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.43 71.24 0.74 0.00 16 2 C 0.09 1.59 7.21 41.40 0.30 1.89 16 3 C -0.29 -6.14 10.64 21.99 0.23 -5.90 16 4 C 0.07 1.91 6.01 43.10 0.26 2.17 16 5 C -0.05 -1.15 4.63 29.10 0.13 -1.01 16 6 C 0.51 15.61 7.69 87.66 0.67 16.29 16 7 O -0.58 -23.36 14.98 -3.02 -0.05 -23.40 16 8 N -0.61 -17.30 2.97 -818.98 -2.43 -19.74 16 9 C 0.11 2.24 6.34 86.36 0.55 2.79 16 10 C -0.13 -3.49 6.08 30.67 0.19 -3.30 16 11 C -0.12 -4.40 4.69 30.62 0.14 -4.25 16 12 C -0.08 -3.19 1.96 -10.73 -0.02 -3.21 16 13 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 14 C 0.16 6.45 2.82 45.34 0.13 6.58 16 15 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 16 C -0.12 -4.29 5.45 31.78 0.17 -4.11 16 17 C -0.12 -4.53 7.09 31.98 0.23 -4.30 16 18 C 0.14 6.94 5.71 86.85 0.50 7.43 16 19 N -0.61 -30.35 2.88 -668.27 -1.93 -32.28 16 20 C -0.31 -16.98 7.14 84.03 0.60 -16.38 16 21 H 0.06 3.17 7.23 -2.91 -0.02 3.15 16 22 C -0.08 -4.39 5.13 84.86 0.44 -3.96 16 23 N -0.94 -58.06 13.07 21.65 0.28 -57.78 16 24 Si 1.11 50.79 30.00 68.60 2.06 52.85 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 28 C 0.13 4.15 5.29 86.35 0.46 4.61 16 29 N -0.31 -9.22 12.06 -47.39 -0.57 -9.79 16 30 N -0.48 -10.17 7.36 -48.00 -0.35 -10.53 16 31 H 0.45 6.64 8.96 -213.33 -1.91 4.72 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.14 2.15 7.67 -2.39 -0.02 2.13 16 37 H 0.14 2.08 7.95 -2.38 -0.02 2.06 16 38 H 0.12 1.56 5.93 -2.39 -0.01 1.55 16 39 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 3.16 4.78 -2.39 -0.01 3.15 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.05 2.04 7.33 -2.39 -0.02 2.02 16 46 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 49 H -0.01 -0.30 6.87 -2.38 -0.02 -0.32 16 50 H 0.25 16.03 6.54 -92.71 -0.61 15.42 16 51 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 52 H 0.07 2.54 5.89 -2.39 -0.01 2.52 16 Total: -1.00 -81.69 400.15 1.90 -79.79 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.83 Total: 25.55 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 5.72 Total: -4.67 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -5.00 Total: -130.10 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.40 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.06 Total: 52.85 kcal Total: -81.69 1.90 -79.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963284566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.997 kcal (2) G-P(sol) polarization free energy of solvation -81.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds