Wall clock time and date at job start Wed Apr 1 2020 04:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33326 * 126.10486 * 2 1 4 4 C 1.30852 * 109.68316 * 180.02562 * 3 2 1 5 5 N 1.34496 * 109.16534 * 359.75919 * 4 3 2 6 6 C 1.46502 * 126.47431 * 180.25383 * 5 4 3 7 7 C 1.36655 * 126.10764 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84671 * 359.95898 * 7 2 1 9 9 O 1.21681 * 119.99618 * 276.19485 * 8 7 2 10 10 N 1.34769 * 119.99925 * 96.19111 * 8 7 2 11 11 C 1.46919 * 120.63242 * 5.14424 * 10 8 7 12 12 C 1.53198 * 108.76885 * 126.36042 * 11 10 8 13 13 C 1.53039 * 109.31162 * 54.65369 * 12 11 10 14 14 C 1.53040 * 109.52742 * 298.62075 * 13 12 11 15 15 H 1.09005 * 109.49484 * 301.41562 * 14 13 12 16 16 C 1.53005 * 109.49777 * 181.35742 * 14 13 12 17 17 H 1.09002 * 109.86641 * 305.42748 * 16 14 13 18 18 C 1.54321 * 109.88014 * 184.25636 * 16 14 13 19 19 C 1.55152 * 102.94017 * 218.38503 * 18 16 14 20 20 C 1.54911 * 101.58261 * 35.50417 * 19 18 16 21 21 N 1.47019 * 109.88358 * 66.44619 * 16 14 13 22 22 C 1.36938 * 125.64703 * 298.39679 * 21 16 14 23 23 H 1.08000 * 119.99831 * 139.61132 * 22 21 16 24 24 C 1.38811 * 120.00068 * 319.60241 * 22 21 16 25 25 N 1.31617 * 120.00441 * 168.17944 * 24 22 21 26 26 Si 1.86808 * 120.00082 * 348.18084 * 24 22 21 27 27 H 1.48500 * 109.46914 * 85.46732 * 26 24 22 28 28 H 1.48496 * 109.47003 * 205.47108 * 26 24 22 29 29 H 1.48499 * 109.46856 * 325.47088 * 26 24 22 30 30 C 1.46926 * 120.63072 * 185.11956 * 10 8 7 31 31 H 1.09003 * 109.46797 * 270.00034 * 1 2 3 32 32 H 1.09000 * 109.47405 * 29.99631 * 1 2 3 33 33 H 1.09002 * 109.47166 * 149.99944 * 1 2 3 34 34 H 1.07996 * 125.41595 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47205 * 275.05562 * 6 5 4 36 36 H 1.08994 * 109.46936 * 35.05850 * 6 5 4 37 37 H 1.08997 * 109.46917 * 155.06024 * 6 5 4 38 38 H 1.09005 * 109.59165 * 246.15482 * 11 10 8 39 39 H 1.09000 * 109.58998 * 6.57741 * 11 10 8 40 40 H 1.08998 * 109.50586 * 294.70080 * 12 11 10 41 41 H 1.08993 * 109.48857 * 174.60064 * 12 11 10 42 42 H 1.08994 * 109.46308 * 178.60561 * 13 12 11 43 43 H 1.09005 * 109.45973 * 58.62716 * 13 12 11 44 44 H 1.08997 * 110.72530 * 336.75191 * 18 16 14 45 45 H 1.09000 * 110.72063 * 100.02725 * 18 16 14 46 46 H 1.09001 * 111.01024 * 277.42986 * 19 18 16 47 47 H 1.09007 * 111.03896 * 153.59339 * 19 18 16 48 48 H 1.09003 * 110.36720 * 204.14994 * 20 19 18 49 49 H 1.08998 * 110.36668 * 81.82851 * 20 19 18 50 50 H 0.96995 * 120.00822 * 180.02562 * 25 24 22 51 51 H 1.08998 * 109.58896 * 113.84126 * 30 10 8 52 52 H 1.09000 * 109.70239 * 353.48795 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6122 -0.6361 0.0044 6 6 4.8306 -1.4496 0.0108 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0003 9 8 1.5957 -3.0556 1.0475 10 7 1.8043 -3.1884 -1.1606 11 6 2.2530 -2.5771 -2.4190 12 6 3.2642 -3.5131 -3.0886 13 6 2.6388 -4.9003 -3.2519 14 6 2.2916 -5.4703 -1.8746 15 1 3.1942 -5.5260 -1.2660 16 6 1.6976 -6.8710 -2.0366 17 1 0.8501 -6.8370 -2.7213 18 6 1.2459 -7.4114 -0.6635 19 6 1.6306 -8.9126 -0.7373 20 6 2.9428 -8.8574 -1.5588 21 7 2.7211 -7.7915 -2.5528 22 6 3.3628 -7.6773 -3.7572 23 1 4.4192 -7.8899 -3.8284 24 6 2.6553 -7.2884 -4.8864 25 7 3.2999 -6.9534 -5.9839 26 14 0.7882 -7.2405 -4.8484 27 1 0.3376 -5.9349 -4.3029 28 1 0.2606 -7.4102 -6.2261 29 1 0.2824 -8.3385 -3.9859 30 6 1.2696 -4.5565 -1.1911 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.3970 1.3746 -0.0011 35 1 5.1860 -1.5797 -1.0114 36 1 5.5981 -0.9497 0.6015 37 1 4.6141 -2.4248 0.4470 38 1 1.3981 -2.4301 -3.0791 39 1 2.7257 -1.6172 -2.2109 40 1 4.1574 -3.5875 -2.4683 41 1 3.5327 -3.1175 -4.0680 42 1 3.3473 -5.5617 -3.7505 43 1 1.7318 -4.8214 -3.8513 44 1 1.7850 -6.9143 0.1430 45 1 0.1694 -7.2949 -0.5383 46 1 0.8660 -9.4868 -1.2606 47 1 1.8095 -9.3202 0.2578 48 1 3.1185 -9.8106 -2.0575 49 1 3.7841 -8.6052 -0.9134 50 1 2.8056 -6.6813 -6.7729 51 1 0.3345 -4.5710 -1.7509 52 1 1.0916 -4.9043 -0.1735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963318719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:41 Heat of formation + Delta-G solvation = 58.804921 kcal Electronic energy + Delta-G solvation = -33031.390333 eV Core-core repulsion = 29032.812188 eV Total energy + Delta-G solvation = -3998.578145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.39239 -39.93408 -38.36996 -36.55482 -34.63203 -33.13734 -32.60692 -31.41006 -31.14438 -30.01518 -28.64415 -27.10574 -26.29473 -25.16932 -24.53151 -22.76057 -22.43035 -20.86186 -20.27188 -20.20046 -19.73358 -18.84930 -17.55103 -16.86425 -16.63315 -15.97178 -15.64686 -15.50703 -15.16574 -14.93640 -14.19076 -14.06206 -13.87809 -13.69754 -13.48661 -13.44298 -13.20718 -13.16245 -12.86273 -12.70676 -12.68101 -12.47538 -12.28476 -12.26395 -12.06376 -11.76310 -11.29869 -11.20956 -10.90569 -10.80384 -10.56659 -10.51482 -10.40162 -10.29642 -10.14760 -9.94494 -9.77603 -9.67830 -9.60086 -9.30608 -8.65908 -8.49011 -8.24686 -6.80009 -6.10131 -3.55533 1.58001 2.10458 2.74961 2.84566 3.14533 3.22029 3.38906 3.43424 4.30507 4.38991 4.41235 4.48236 4.85294 4.85936 4.92215 4.98099 5.08728 5.14085 5.18881 5.27217 5.32407 5.35385 5.50630 5.55812 5.57836 5.60509 5.64955 5.72145 5.77781 5.82028 5.88364 5.96265 6.00296 6.05161 6.11870 6.20503 6.27697 6.30836 6.35368 6.41211 6.44014 6.59783 6.64271 6.76975 6.84137 6.84860 6.90451 7.09436 7.39741 7.54464 7.81660 7.92840 8.07907 8.25269 8.78350 9.55059 10.20059 11.04230 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003721 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.370662 B = 7523.531268 C = 7993.736813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.053 3.947 3 N -0.492 5.492 4 C 0.196 3.804 5 N -0.439 5.439 6 C 0.067 3.933 7 C -0.066 4.066 8 C 0.593 3.407 9 O -0.532 6.532 10 N -0.590 5.590 11 C 0.108 3.892 12 C -0.128 4.128 13 C -0.143 4.143 14 C -0.093 4.093 15 H 0.068 0.932 16 C 0.152 3.848 17 H 0.035 0.965 18 C -0.131 4.131 19 C -0.136 4.136 20 C 0.130 3.870 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.082 0.918 24 C 0.047 3.953 25 N -0.903 5.903 26 Si 0.885 3.115 27 H -0.274 1.274 28 H -0.305 1.305 29 H -0.274 1.274 30 C 0.110 3.890 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.210 0.790 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.135 0.865 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.025 0.975 50 H 0.265 0.735 51 H 0.064 0.936 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.078 10.966 9.863 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 N -0.211 5.211 4 C -0.085 4.085 5 N -0.122 5.122 6 C -0.075 4.075 7 C -0.183 4.183 8 C 0.378 3.622 9 O -0.408 6.408 10 N -0.322 5.322 11 C -0.015 4.015 12 C -0.166 4.166 13 C -0.179 4.179 14 C -0.114 4.114 15 H 0.087 0.913 16 C 0.046 3.954 17 H 0.053 0.947 18 C -0.169 4.169 19 C -0.175 4.175 20 C 0.005 3.995 21 N -0.328 5.328 22 C -0.376 4.376 23 H 0.099 0.901 24 C -0.154 4.154 25 N -0.544 5.544 26 Si 0.716 3.284 27 H -0.202 1.202 28 H -0.234 1.234 29 H -0.199 1.199 30 C -0.012 4.012 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.227 0.773 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.153 0.847 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.043 0.957 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.302 11.391 10.143 15.255 hybrid contribution -0.598 -0.562 -0.219 0.849 sum -0.900 10.829 9.924 14.716 Atomic orbital electron populations 1.20106 0.87190 1.02837 1.02756 1.20790 0.96353 0.86758 1.04028 1.70000 1.00370 1.30065 1.20653 1.24949 0.97170 0.81654 1.04752 1.45331 1.05931 1.07748 1.53220 1.22201 0.84489 0.96459 1.04360 1.20724 0.84794 0.95100 1.17668 1.16963 0.78252 0.83287 0.83711 1.90821 1.50287 1.68563 1.31093 1.48132 1.61394 1.15503 1.07139 1.21836 0.98573 0.96231 0.84823 1.21917 0.97503 0.97124 1.00031 1.22299 1.03438 0.95426 0.96769 1.21850 0.97640 0.94812 0.97086 0.91333 1.21202 0.92367 0.89146 0.92705 0.94729 1.22650 1.00175 0.96445 0.97593 1.22763 0.99174 0.96034 0.99514 1.21732 0.94081 0.92542 0.91169 1.44651 1.47010 1.23384 1.17780 1.18418 0.92801 1.44386 0.81959 0.90094 1.25453 0.97353 0.98007 0.94611 1.69761 1.35408 1.46440 1.02834 0.87048 0.87559 0.78502 0.75262 1.20155 1.23369 1.19947 1.21948 0.96928 0.79730 1.02553 0.90815 0.90593 0.91408 0.77312 0.89594 0.88856 0.89389 0.91331 0.90923 0.92394 0.91000 0.84692 0.92761 0.91277 0.91948 0.91814 0.91883 0.93341 0.95747 0.92463 0.91746 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.24 36.01 0.37 -0.48 16 2 C 0.05 0.75 7.15 -82.51 -0.59 0.16 16 3 N -0.49 -6.63 11.20 -10.65 -0.12 -6.75 16 4 C 0.20 2.07 12.52 -90.58 -1.13 0.93 16 5 N -0.44 -4.96 3.00 -121.98 -0.37 -5.33 16 6 C 0.07 0.56 11.07 59.85 0.66 1.22 16 7 C -0.07 -0.94 4.70 -82.14 -0.39 -1.33 16 8 C 0.59 9.49 6.61 -12.82 -0.08 9.41 16 9 O -0.53 -10.06 16.53 5.21 0.09 -9.98 16 10 N -0.59 -9.11 2.97 -174.28 -0.52 -9.63 16 11 C 0.11 1.53 6.32 -3.71 -0.02 1.51 16 12 C -0.13 -2.00 6.08 -26.61 -0.16 -2.16 16 13 C -0.14 -2.79 3.63 -26.69 -0.10 -2.89 16 14 C -0.09 -1.71 1.96 -90.50 -0.18 -1.89 16 15 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 16 C 0.15 3.05 2.00 -66.95 -0.13 2.91 16 17 H 0.04 0.77 3.43 -51.93 -0.18 0.59 16 18 C -0.13 -2.19 5.43 -24.90 -0.14 -2.32 16 19 C -0.14 -2.23 7.08 -24.58 -0.17 -2.41 16 20 C 0.13 2.50 7.23 -2.53 -0.02 2.48 16 21 N -0.60 -13.50 2.63 -162.57 -0.43 -13.93 16 22 C -0.25 -6.38 8.44 -15.06 -0.13 -6.51 16 23 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 24 C 0.05 1.24 3.53 -17.43 -0.06 1.18 16 25 N -0.90 -25.19 13.97 55.49 0.78 -24.42 16 26 Si 0.88 21.35 23.09 -169.99 -3.92 17.42 16 27 H -0.27 -6.25 5.49 56.52 0.31 -5.94 16 28 H -0.31 -7.61 7.11 56.52 0.40 -7.21 16 29 H -0.27 -6.69 7.08 56.52 0.40 -6.29 16 30 C 0.11 1.83 5.30 -3.71 -0.02 1.81 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.21 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.88 7.79 -51.93 -0.40 0.47 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.95 6.25 -51.93 -0.32 0.62 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.14 3.17 4.27 -51.93 -0.22 2.94 16 43 H 0.05 1.14 5.46 -51.93 -0.28 0.85 16 44 H 0.07 1.10 7.32 -51.93 -0.38 0.72 16 45 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.09 1.53 5.87 -51.93 -0.30 1.23 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -31.41 389.09 -9.43 -40.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.50 Total: 4.30 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -2.29 Total: 1.61 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.66 Total: -60.06 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -3.92 Total: 17.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.41 -9.43 -40.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.645 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds