Wall clock time and date at job start Wed Apr 1 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33326 * 126.10486 * 2 1 4 4 C 1.30852 * 109.68316 * 180.02562 * 3 2 1 5 5 N 1.34496 * 109.16534 * 359.75919 * 4 3 2 6 6 C 1.46502 * 126.47431 * 180.25383 * 5 4 3 7 7 C 1.36655 * 126.10764 * 180.02562 * 2 1 3 8 8 C 1.46768 * 126.84671 * 359.95898 * 7 2 1 9 9 O 1.21681 * 119.99618 * 276.19485 * 8 7 2 10 10 N 1.34769 * 119.99925 * 96.19111 * 8 7 2 11 11 C 1.46919 * 120.63242 * 5.14424 * 10 8 7 12 12 C 1.53198 * 108.76885 * 126.36042 * 11 10 8 13 13 C 1.53039 * 109.31162 * 54.65369 * 12 11 10 14 14 C 1.53040 * 109.52742 * 298.62075 * 13 12 11 15 15 H 1.09005 * 109.49484 * 301.41562 * 14 13 12 16 16 C 1.53005 * 109.49777 * 181.35742 * 14 13 12 17 17 H 1.09002 * 109.86641 * 305.42748 * 16 14 13 18 18 C 1.54321 * 109.88014 * 184.25636 * 16 14 13 19 19 C 1.55152 * 102.94017 * 218.38503 * 18 16 14 20 20 C 1.54911 * 101.58261 * 35.50417 * 19 18 16 21 21 N 1.47019 * 109.88358 * 66.44619 * 16 14 13 22 22 C 1.36938 * 125.64703 * 298.39679 * 21 16 14 23 23 H 1.08000 * 119.99831 * 139.61132 * 22 21 16 24 24 C 1.38811 * 120.00068 * 319.60241 * 22 21 16 25 25 N 1.31617 * 120.00441 * 168.17944 * 24 22 21 26 26 Si 1.86808 * 120.00082 * 348.18084 * 24 22 21 27 27 H 1.48500 * 109.46914 * 85.46732 * 26 24 22 28 28 H 1.48496 * 109.47003 * 205.47108 * 26 24 22 29 29 H 1.48499 * 109.46856 * 325.47088 * 26 24 22 30 30 C 1.46926 * 120.63072 * 185.11956 * 10 8 7 31 31 H 1.09003 * 109.46797 * 270.00034 * 1 2 3 32 32 H 1.09000 * 109.47405 * 29.99631 * 1 2 3 33 33 H 1.09002 * 109.47166 * 149.99944 * 1 2 3 34 34 H 1.07996 * 125.41595 * 179.97438 * 4 3 2 35 35 H 1.09002 * 109.47205 * 275.05562 * 6 5 4 36 36 H 1.08994 * 109.46936 * 35.05850 * 6 5 4 37 37 H 1.08997 * 109.46917 * 155.06024 * 6 5 4 38 38 H 1.09005 * 109.59165 * 246.15482 * 11 10 8 39 39 H 1.09000 * 109.58998 * 6.57741 * 11 10 8 40 40 H 1.08998 * 109.50586 * 294.70080 * 12 11 10 41 41 H 1.08993 * 109.48857 * 174.60064 * 12 11 10 42 42 H 1.08994 * 109.46308 * 178.60561 * 13 12 11 43 43 H 1.09005 * 109.45973 * 58.62716 * 13 12 11 44 44 H 1.08997 * 110.72530 * 336.75191 * 18 16 14 45 45 H 1.09000 * 110.72063 * 100.02725 * 18 16 14 46 46 H 1.09001 * 111.01024 * 277.42986 * 19 18 16 47 47 H 1.09007 * 111.03896 * 153.59339 * 19 18 16 48 48 H 1.09003 * 110.36720 * 204.14994 * 20 19 18 49 49 H 1.08998 * 110.36668 * 81.82851 * 20 19 18 50 50 H 0.96995 * 120.00822 * 180.02562 * 25 24 22 51 51 H 1.08998 * 109.58896 * 113.84126 * 30 10 8 52 52 H 1.09000 * 109.70239 * 353.48795 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7073 -0.0006 5 7 3.6122 -0.6361 0.0044 6 6 4.8306 -1.4496 0.0108 7 6 2.3124 -1.1041 -0.0005 8 6 1.8821 -2.5073 -0.0003 9 8 1.5957 -3.0556 1.0475 10 7 1.8043 -3.1884 -1.1606 11 6 2.2530 -2.5771 -2.4190 12 6 3.2642 -3.5131 -3.0886 13 6 2.6388 -4.9003 -3.2519 14 6 2.2916 -5.4703 -1.8746 15 1 3.1942 -5.5260 -1.2660 16 6 1.6976 -6.8710 -2.0366 17 1 0.8501 -6.8370 -2.7213 18 6 1.2459 -7.4114 -0.6635 19 6 1.6306 -8.9126 -0.7373 20 6 2.9428 -8.8574 -1.5588 21 7 2.7211 -7.7915 -2.5528 22 6 3.3628 -7.6773 -3.7572 23 1 4.4192 -7.8899 -3.8284 24 6 2.6553 -7.2884 -4.8864 25 7 3.2999 -6.9534 -5.9839 26 14 0.7882 -7.2405 -4.8484 27 1 0.3376 -5.9349 -4.3029 28 1 0.2606 -7.4102 -6.2261 29 1 0.2824 -8.3385 -3.9859 30 6 1.2696 -4.5565 -1.1911 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.3970 1.3746 -0.0011 35 1 5.1860 -1.5797 -1.0114 36 1 5.5981 -0.9497 0.6015 37 1 4.6141 -2.4248 0.4470 38 1 1.3981 -2.4301 -3.0791 39 1 2.7257 -1.6172 -2.2109 40 1 4.1574 -3.5875 -2.4683 41 1 3.5327 -3.1175 -4.0680 42 1 3.3473 -5.5617 -3.7505 43 1 1.7318 -4.8214 -3.8513 44 1 1.7850 -6.9143 0.1430 45 1 0.1694 -7.2949 -0.5383 46 1 0.8660 -9.4868 -1.2606 47 1 1.8095 -9.3202 0.2578 48 1 3.1185 -9.8106 -2.0575 49 1 3.7841 -8.6052 -0.9134 50 1 2.8056 -6.6813 -6.7729 51 1 0.3345 -4.5710 -1.7509 52 1 1.0916 -4.9043 -0.1735 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963318719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:40 Heat of formation + Delta-G solvation = 40.606397 kcal Electronic energy + Delta-G solvation = -33032.179481 eV Core-core repulsion = 29032.812188 eV Total energy + Delta-G solvation = -3999.367292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.31171 -41.26036 -39.83814 -37.94150 -35.46722 -34.88910 -34.12884 -32.73288 -32.20584 -31.74691 -29.57258 -28.46856 -27.21183 -26.47280 -26.23968 -24.14692 -23.56736 -21.94438 -21.72847 -21.56895 -21.21055 -20.01252 -18.81948 -18.48725 -17.72800 -17.47387 -16.82658 -16.58107 -16.51233 -16.24850 -15.47567 -15.35609 -15.26083 -15.17929 -14.86806 -14.76543 -14.50437 -14.22593 -14.11129 -13.95693 -13.72208 -13.63711 -13.58537 -13.32755 -13.27294 -13.14958 -12.92597 -12.89490 -12.42770 -12.29195 -12.15221 -11.98903 -11.85148 -11.82942 -11.64593 -11.44291 -11.13052 -10.96032 -10.91859 -10.61234 -10.38551 -9.77960 -9.44944 -8.65151 -8.16939 -5.58168 0.63837 1.05089 1.27653 1.39341 1.47186 1.66245 1.94458 2.07804 2.40720 3.11401 3.26730 3.36738 3.59078 3.68687 3.79101 3.85866 3.96822 3.99089 4.07608 4.08938 4.18005 4.21573 4.25362 4.29434 4.31619 4.41097 4.51441 4.54977 4.57562 4.64096 4.70530 4.74031 4.79661 4.82458 4.85326 4.91111 4.95661 4.98486 5.10382 5.12038 5.13391 5.20729 5.29470 5.38951 5.44709 5.50305 5.54442 5.80625 6.01836 6.11083 6.17899 6.20155 6.83615 6.88872 6.92436 7.56253 8.26678 9.01543 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014919 B = 0.003721 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.370662 B = 7523.531268 C = 7993.736813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.045 3.955 3 N -0.523 5.523 4 C 0.216 3.784 5 N -0.439 5.439 6 C 0.063 3.937 7 C -0.095 4.095 8 C 0.601 3.399 9 O -0.565 6.565 10 N -0.589 5.589 11 C 0.118 3.882 12 C -0.120 4.120 13 C -0.138 4.138 14 C -0.082 4.082 15 H 0.058 0.942 16 C 0.144 3.856 17 H 0.019 0.981 18 C -0.125 4.125 19 C -0.125 4.125 20 C 0.121 3.879 21 N -0.619 5.619 22 C -0.234 4.234 23 H 0.044 0.956 24 C 0.015 3.985 25 N -0.942 5.942 26 Si 0.929 3.071 27 H -0.256 1.256 28 H -0.318 1.318 29 H -0.275 1.275 30 C 0.119 3.881 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.256 0.744 35 H 0.097 0.903 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.040 0.960 49 H 0.032 0.968 50 H 0.263 0.737 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 12.655 11.790 17.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.088 4.088 3 N -0.242 5.242 4 C -0.066 4.066 5 N -0.122 5.122 6 C -0.078 4.078 7 C -0.212 4.212 8 C 0.387 3.613 9 O -0.444 6.444 10 N -0.320 5.320 11 C -0.004 4.004 12 C -0.158 4.158 13 C -0.175 4.175 14 C -0.103 4.103 15 H 0.076 0.924 16 C 0.038 3.962 17 H 0.036 0.964 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.003 4.003 21 N -0.345 5.345 22 C -0.363 4.363 23 H 0.061 0.939 24 C -0.182 4.182 25 N -0.586 5.586 26 Si 0.760 3.240 27 H -0.182 1.182 28 H -0.247 1.247 29 H -0.201 1.201 30 C -0.004 4.004 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.271 0.729 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.113 0.887 43 H 0.056 0.944 44 H 0.098 0.902 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.058 0.942 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.086 0.914 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.627 13.073 12.096 17.821 hybrid contribution -0.344 -1.081 -0.779 1.376 sum -0.971 11.992 11.316 16.517 Atomic orbital electron populations 1.20144 0.86572 1.03204 1.03003 1.21106 0.97173 0.86968 1.03553 1.70026 1.01649 1.30173 1.22362 1.25861 0.97572 0.81693 1.01435 1.45516 1.05653 1.08289 1.52699 1.22424 0.84081 0.95674 1.05614 1.20471 0.86417 0.93927 1.20339 1.17141 0.77243 0.83878 0.83011 1.90792 1.51782 1.69604 1.32198 1.48134 1.61173 1.15068 1.07606 1.21790 0.98300 0.96219 0.84124 1.21815 0.97891 0.95272 1.00796 1.22071 1.01690 0.97031 0.96744 1.21669 0.97653 0.94619 0.96361 0.92366 1.21332 0.91022 0.89678 0.94187 0.96417 1.22659 1.01589 0.96437 0.95555 1.22719 0.96960 0.95940 1.00662 1.21886 0.96269 0.91251 0.90901 1.44779 1.47038 1.25310 1.17345 1.18147 0.91410 1.43082 0.83649 0.93879 1.25745 1.00028 0.98246 0.94231 1.69861 1.36535 1.48628 1.03542 0.86330 0.84064 0.79237 0.74330 1.18188 1.24698 1.20132 1.21763 0.96257 0.80077 1.02308 0.90606 0.89489 0.91737 0.72869 0.88502 0.85305 0.91440 0.90836 0.89217 0.91852 0.90418 0.88682 0.94409 0.90225 0.89838 0.92022 0.88389 0.94156 0.95052 0.92764 0.91395 0.88861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.24 71.24 0.73 -0.89 16 2 C 0.04 1.18 7.15 41.96 0.30 1.48 16 3 N -0.52 -12.78 11.20 -187.59 -2.10 -14.89 16 4 C 0.22 3.78 12.52 180.33 2.26 6.04 16 5 N -0.44 -8.69 3.00 -539.82 -1.62 -10.31 16 6 C 0.06 0.86 11.07 127.77 1.41 2.28 16 7 C -0.10 -2.52 4.70 40.01 0.19 -2.34 16 8 C 0.60 18.47 6.61 86.47 0.57 19.04 16 9 O -0.57 -20.92 16.53 -4.29 -0.07 -20.99 16 10 N -0.59 -17.37 2.97 -823.53 -2.45 -19.81 16 11 C 0.12 3.14 6.32 86.37 0.55 3.68 16 12 C -0.12 -3.65 6.08 30.67 0.19 -3.47 16 13 C -0.14 -5.44 3.63 30.62 0.11 -5.32 16 14 C -0.08 -2.98 1.96 -10.71 -0.02 -3.00 16 15 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 16 C 0.14 5.62 2.00 45.34 0.09 5.71 16 17 H 0.02 0.79 3.43 -2.39 -0.01 0.78 16 18 C -0.12 -3.85 5.43 31.78 0.17 -3.68 16 19 C -0.12 -3.75 7.08 31.99 0.23 -3.52 16 20 C 0.12 4.57 7.23 86.86 0.63 5.20 16 21 N -0.62 -27.88 2.63 -668.26 -1.76 -29.63 16 22 C -0.23 -12.47 8.44 84.03 0.71 -11.77 16 23 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 24 C 0.02 0.83 3.53 84.86 0.30 1.13 16 25 N -0.94 -54.55 13.97 21.65 0.30 -54.24 16 26 Si 0.93 44.64 23.09 68.60 1.58 46.23 16 27 H -0.26 -11.37 5.49 99.48 0.55 -10.83 16 28 H -0.32 -15.78 7.11 99.48 0.71 -15.07 16 29 H -0.28 -13.18 7.08 99.48 0.70 -12.47 16 30 C 0.12 3.77 5.30 86.36 0.46 4.23 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.46 7.94 -2.39 -0.02 1.44 16 34 H 0.26 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.07 1.23 7.79 -2.39 -0.02 1.22 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.09 2.13 6.25 -2.39 -0.01 2.12 16 40 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.09 4.60 4.27 -2.39 -0.01 4.59 16 43 H 0.04 1.58 5.46 -2.38 -0.01 1.57 16 44 H 0.08 2.31 7.32 -2.39 -0.02 2.30 16 45 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 51 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 52 H 0.09 2.97 5.87 -2.39 -0.01 2.95 16 Total: -1.00 -70.96 389.09 3.51 -67.45 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.75 Total: 21.40 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 8.87 Total: 14.81 kcal Atomic # 7 Polarization: -121.26 SS G_CDS: -7.62 Total: -128.89 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.07 Total: -20.99 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.58 Total: 46.23 kcal Total: -70.96 3.51 -67.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.057 kcal (2) G-P(sol) polarization free energy of solvation -70.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds