Wall clock time and date at job start Wed Apr 1 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33316 * 126.10320 * 2 1 4 4 C 1.30856 * 109.68506 * 180.27523 * 3 2 1 5 5 N 1.34494 * 109.16264 * 359.76772 * 4 3 2 6 6 C 1.46508 * 126.47358 * 179.97438 * 5 4 3 7 7 C 1.36654 * 126.11089 * 179.88372 * 2 1 3 8 8 C 1.46772 * 126.84368 * 359.97438 * 7 2 1 9 9 O 1.21687 * 119.99774 * 85.90886 * 8 7 2 10 10 N 1.34769 * 120.00269 * 265.90919 * 8 7 2 11 11 C 1.46931 * 120.63289 * 4.80748 * 10 8 7 12 12 C 1.53186 * 108.77814 * 126.36351 * 11 10 8 13 13 C 1.53043 * 109.31461 * 54.63861 * 12 11 10 14 14 C 1.53048 * 109.53590 * 298.63436 * 13 12 11 15 15 H 1.09001 * 109.52006 * 301.39798 * 14 13 12 16 16 C 1.52994 * 109.49702 * 181.31402 * 14 13 12 17 17 H 1.08995 * 109.87219 * 179.02600 * 16 14 13 18 18 C 1.54323 * 110.01251 * 300.12776 * 16 14 13 19 19 C 1.55147 * 102.94485 * 141.68462 * 18 16 14 20 20 C 1.55136 * 101.48489 * 324.32879 * 19 18 16 21 21 N 1.47019 * 109.88170 * 58.00958 * 16 14 13 22 22 C 1.36942 * 125.64667 * 61.45137 * 21 16 14 23 23 H 1.07998 * 120.00194 * 15.99370 * 22 21 16 24 24 C 1.38814 * 119.99842 * 195.98809 * 22 21 16 25 25 N 1.31623 * 120.00017 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99745 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.46923 * 179.97438 * 26 24 22 28 28 H 1.48491 * 109.47149 * 299.99751 * 26 24 22 29 29 H 1.48498 * 109.47194 * 60.00174 * 26 24 22 30 30 C 1.46927 * 120.63232 * 184.77937 * 10 8 7 31 31 H 1.09005 * 109.47270 * 270.11452 * 1 2 3 32 32 H 1.09002 * 109.47370 * 30.12055 * 1 2 3 33 33 H 1.09006 * 109.47198 * 150.11817 * 1 2 3 34 34 H 1.08000 * 125.42288 * 179.78659 * 4 3 2 35 35 H 1.08993 * 109.47099 * 274.09242 * 6 5 4 36 36 H 1.08998 * 109.47063 * 34.09870 * 6 5 4 37 37 H 1.09002 * 109.46453 * 154.09497 * 6 5 4 38 38 H 1.08999 * 109.58632 * 246.15612 * 11 10 8 39 39 H 1.09003 * 109.58253 * 6.57740 * 11 10 8 40 40 H 1.09006 * 109.49623 * 174.58966 * 12 11 10 41 41 H 1.09008 * 109.49835 * 294.65384 * 12 11 10 42 42 H 1.09000 * 109.46252 * 178.61653 * 13 12 11 43 43 H 1.09001 * 109.46061 * 58.64918 * 13 12 11 44 44 H 1.09006 * 110.71630 * 260.04804 * 18 16 14 45 45 H 1.09001 * 110.71999 * 23.31660 * 18 16 14 46 46 H 1.08997 * 111.00914 * 82.56927 * 19 18 16 47 47 H 1.09007 * 111.00756 * 206.38551 * 19 18 16 48 48 H 1.09003 * 110.49364 * 278.45555 * 20 19 18 49 49 H 1.08999 * 110.33978 * 156.06102 * 20 19 18 50 50 H 0.97002 * 119.99973 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.58893 * 113.84630 * 30 10 8 52 52 H 1.09002 * 109.58752 * 353.42010 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.0771 0.0000 4 6 3.5477 0.7073 -0.0059 5 7 3.6121 -0.6361 -0.0048 6 6 4.8306 -1.4496 -0.0106 7 6 2.3123 -1.1040 0.0022 8 6 1.8821 -2.5072 0.0056 9 8 1.6315 -3.0693 -1.0442 10 7 1.7646 -3.1733 1.1713 11 6 1.9613 -2.4809 2.4523 12 6 0.7340 -2.7221 3.3367 13 6 0.4917 -4.2276 3.4668 14 6 0.2152 -4.8228 2.0842 15 1 -0.6526 -4.3323 1.6433 16 6 -0.0591 -6.3219 2.2192 17 1 -0.2739 -6.7489 1.2396 18 6 1.1628 -7.0283 2.8433 19 6 0.5144 -8.0847 3.7764 20 6 -0.7368 -7.3213 4.2848 21 7 -1.1987 -6.5424 3.1215 22 6 -2.4763 -6.0935 2.9180 23 1 -2.7809 -5.7573 1.9379 24 6 -3.3800 -6.0706 3.9714 25 7 -3.0090 -6.4809 5.1658 26 14 -5.1230 -5.4589 3.6936 27 1 -5.8833 -5.5355 4.9670 28 1 -5.0844 -4.0509 3.2235 29 1 -5.7871 -6.3048 2.6695 30 6 1.4368 -4.6054 1.1855 31 1 -0.3634 0.0021 1.0277 32 1 -0.3634 0.8889 -0.5157 33 1 -0.3634 -0.8911 -0.5120 34 1 4.3969 1.3746 -0.0106 35 1 5.1678 -1.5915 -1.0373 36 1 5.6084 -0.9430 0.5607 37 1 4.6218 -2.4197 0.4406 38 1 2.8504 -2.8724 2.9465 39 1 2.0798 -1.4119 2.2753 40 1 0.9077 -2.2948 4.3244 41 1 -0.1386 -2.2504 2.8846 42 1 -0.3665 -4.4026 4.1156 43 1 1.3743 -4.7016 3.8963 44 1 1.7640 -7.5114 2.0730 45 1 1.7639 -6.3235 3.4177 46 1 0.2316 -8.9775 3.2189 47 1 1.1792 -8.3369 4.6027 48 1 -0.4702 -6.6554 5.1056 49 1 -1.5074 -8.0246 4.6007 50 1 -3.6406 -6.4653 5.9018 51 1 2.2831 -5.1702 1.5764 52 1 1.2092 -4.9382 0.1728 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963318722.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:47 Heat of formation + Delta-G solvation = 50.579676 kcal Electronic energy + Delta-G solvation = -32489.326556 eV Core-core repulsion = 28490.391738 eV Total energy + Delta-G solvation = -3998.934819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.42888 -39.96641 -38.25520 -36.41123 -34.68798 -32.98467 -32.32806 -31.54824 -31.02840 -29.35101 -28.63908 -26.80447 -26.32485 -25.24755 -24.52993 -22.84158 -22.35747 -21.12632 -20.74527 -20.10779 -19.00624 -18.34616 -17.62296 -16.77484 -16.56617 -15.88709 -15.61323 -15.33683 -15.09620 -14.58152 -14.36084 -14.12126 -14.01110 -13.85950 -13.72961 -13.39356 -13.17221 -13.01501 -12.86104 -12.69521 -12.46941 -12.21819 -12.17464 -12.08656 -11.86890 -11.57025 -11.14455 -10.89435 -10.82715 -10.71395 -10.53762 -10.38517 -10.26843 -10.11754 -9.98605 -9.91271 -9.80027 -9.66979 -9.65475 -9.45427 -8.56331 -8.53708 -8.51287 -6.74918 -5.74349 -3.09117 1.54316 2.04671 2.66416 2.82696 3.12326 3.40765 3.45689 3.46650 4.27444 4.31474 4.38852 4.49865 4.71982 4.84872 4.92269 4.99384 5.11399 5.15406 5.21947 5.22348 5.41714 5.44565 5.55204 5.67807 5.69455 5.72071 5.75644 5.76881 5.81983 5.86808 5.91224 5.93665 5.97305 6.07626 6.17084 6.26572 6.34434 6.43426 6.46175 6.53578 6.60263 6.66000 6.75957 6.86027 6.99784 7.03383 7.15876 7.33979 7.54436 7.64376 7.79041 7.81394 8.04400 8.29986 9.21844 9.82762 10.52232 11.37831 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013996 B = 0.003359 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.119728 B = 8334.609767 C = 9459.873050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.058 3.942 3 N -0.491 5.491 4 C 0.195 3.805 5 N -0.441 5.441 6 C 0.070 3.930 7 C -0.069 4.069 8 C 0.594 3.406 9 O -0.529 6.529 10 N -0.593 5.593 11 C 0.111 3.889 12 C -0.133 4.133 13 C -0.105 4.105 14 C -0.104 4.104 15 H 0.072 0.928 16 C 0.168 3.832 17 H 0.033 0.967 18 C -0.130 4.130 19 C -0.150 4.150 20 C 0.176 3.824 21 N -0.589 5.589 22 C -0.225 4.225 23 H 0.072 0.928 24 C -0.001 4.001 25 N -0.917 5.917 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.284 1.284 29 H -0.285 1.285 30 C 0.114 3.886 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.210 0.790 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.026 0.974 49 H 0.066 0.934 50 H 0.252 0.748 51 H 0.068 0.932 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.699 9.312 -5.151 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 N -0.210 5.210 4 C -0.086 4.086 5 N -0.125 5.125 6 C -0.072 4.072 7 C -0.185 4.185 8 C 0.379 3.621 9 O -0.404 6.404 10 N -0.325 5.325 11 C -0.012 4.012 12 C -0.171 4.171 13 C -0.142 4.142 14 C -0.125 4.125 15 H 0.091 0.909 16 C 0.059 3.941 17 H 0.051 0.949 18 C -0.168 4.168 19 C -0.189 4.189 20 C 0.051 3.949 21 N -0.313 5.313 22 C -0.354 4.354 23 H 0.090 0.910 24 C -0.198 4.198 25 N -0.563 5.563 26 Si 0.735 3.265 27 H -0.217 1.217 28 H -0.211 1.211 29 H -0.212 1.212 30 C -0.008 4.008 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.222 9.693 -5.563 20.530 hybrid contribution -0.439 -0.292 -0.016 0.528 sum 16.783 9.401 -5.579 20.029 Atomic orbital electron populations 1.20169 0.86956 1.03309 1.02939 1.20856 0.96463 0.86705 1.03448 1.70012 1.00338 1.30144 1.20469 1.24955 0.97222 0.81565 1.04872 1.45273 1.05805 1.07727 1.53647 1.22136 0.84635 0.96310 1.04135 1.20691 0.84736 0.95200 1.17888 1.16956 0.78013 0.83322 0.83855 1.90838 1.50308 1.67885 1.31378 1.48178 1.68087 1.10831 1.05423 1.21756 0.98801 0.96882 0.83734 1.21929 0.97226 0.99021 0.98913 1.21490 1.02651 0.92228 0.97827 1.21963 0.95994 0.99646 0.94916 0.90915 1.20881 0.88122 0.90900 0.94165 0.94918 1.22683 0.97180 0.98170 0.98727 1.23043 0.99570 0.97876 0.98363 1.21425 0.91563 0.92938 0.89003 1.44455 1.03827 1.61469 1.21563 1.18887 0.85703 1.36513 0.94274 0.91045 1.24860 0.98542 1.01190 0.95233 1.69922 1.34277 1.51948 1.00202 0.86310 0.84526 0.78898 0.76716 1.21683 1.21105 1.21191 1.21915 0.98261 0.78407 1.02177 0.90650 0.90532 0.90943 0.77337 0.89984 0.88849 0.89600 0.91713 0.90507 0.91206 0.91510 0.89074 0.92816 0.92663 0.91560 0.92495 0.92662 0.95621 0.91595 0.93734 0.91396 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.24 36.00 0.37 -0.61 16 2 C 0.06 0.80 7.03 -82.52 -0.58 0.22 16 3 N -0.49 -6.45 11.20 -10.65 -0.12 -6.57 16 4 C 0.20 1.90 12.52 -90.58 -1.13 0.76 16 5 N -0.44 -4.46 3.17 -121.97 -0.39 -4.85 16 6 C 0.07 0.43 11.06 59.85 0.66 1.10 16 7 C -0.07 -0.93 4.67 -82.14 -0.38 -1.31 16 8 C 0.59 9.04 6.63 -12.82 -0.08 8.95 16 9 O -0.53 -9.86 16.52 5.20 0.09 -9.77 16 10 N -0.59 -8.23 2.97 -174.27 -0.52 -8.75 16 11 C 0.11 1.33 6.32 -3.71 -0.02 1.31 16 12 C -0.13 -1.84 6.08 -26.61 -0.16 -2.00 16 13 C -0.10 -1.74 4.74 -26.68 -0.13 -1.87 16 14 C -0.10 -1.80 2.10 -90.50 -0.19 -1.99 16 15 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 16 C 0.17 3.22 2.95 -66.96 -0.20 3.03 16 17 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 18 C -0.13 -2.10 5.11 -24.90 -0.13 -2.23 16 19 C -0.15 -2.69 7.10 -24.47 -0.17 -2.86 16 20 C 0.18 4.01 5.40 -2.41 -0.01 4.00 16 21 N -0.59 -13.94 2.28 -162.44 -0.37 -14.31 16 22 C -0.23 -5.97 9.83 -15.06 -0.15 -6.12 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C 0.00 -0.04 5.47 -17.43 -0.10 -0.13 16 25 N -0.92 -25.82 10.62 55.49 0.59 -25.23 16 26 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 30 C 0.11 1.69 5.57 -3.71 -0.02 1.67 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 34 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.60 7.81 -51.93 -0.41 0.19 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.91 6.29 -51.93 -0.33 0.58 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.02 8.14 -51.92 -0.42 0.59 16 42 H 0.09 1.93 7.53 -51.93 -0.39 1.54 16 43 H 0.05 0.83 6.13 -51.93 -0.32 0.52 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.01 5.54 -51.93 -0.29 0.72 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.03 0.63 8.04 -51.93 -0.42 0.22 16 49 H 0.07 1.71 7.01 -51.93 -0.36 1.35 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.07 0.90 6.92 -51.93 -0.36 0.54 16 52 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -32.53 402.47 -10.79 -43.32 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -8.68 Total: 1.45 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -2.43 Total: 1.93 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.81 Total: -59.71 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.53 -10.79 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963318722.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.898 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds