Wall clock time and date at job start Wed Apr 1 2020 03:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30445 * 125.98752 * 2 1 4 4 N 1.39938 * 108.89590 * 180.02562 * 3 2 1 5 5 H 0.97006 * 125.75830 * 179.97438 * 4 3 2 6 6 C 1.34268 * 108.49202 * 359.75584 * 4 3 2 7 7 C 1.50696 * 126.28967 * 180.24124 * 6 4 3 8 8 C 1.38037 * 107.41384 * 0.39098 * 6 4 3 9 9 C 1.47428 * 126.41325 * 179.87631 * 8 6 4 10 10 O 1.21609 * 119.99777 * 269.70925 * 9 8 6 11 11 N 1.34777 * 120.00107 * 89.70974 * 9 8 6 12 12 C 1.46924 * 120.63029 * 0.02779 * 11 9 8 13 13 C 1.53187 * 108.77601 * 126.36804 * 12 11 9 14 14 C 1.53041 * 109.31487 * 54.63358 * 13 12 11 15 15 C 1.53035 * 109.53595 * 298.63434 * 14 13 12 16 16 H 1.09005 * 109.52726 * 301.39358 * 15 14 13 17 17 C 1.53008 * 109.49694 * 181.31717 * 15 14 13 18 18 H 1.09001 * 109.87403 * 179.28225 * 17 15 14 19 19 C 1.54327 * 110.00813 * 300.37747 * 17 15 14 20 20 C 1.55152 * 102.93802 * 141.68557 * 19 17 15 21 21 C 1.55132 * 101.48668 * 324.32797 * 20 19 17 22 22 N 1.47021 * 109.88451 * 58.26430 * 17 15 14 23 23 C 1.36933 * 125.64948 * 61.44950 * 22 17 15 24 24 H 1.08002 * 120.00083 * 14.72012 * 23 22 17 25 25 C 1.38817 * 120.00387 * 194.72480 * 23 22 17 26 26 N 1.31622 * 119.99475 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00182 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.46970 * 269.99738 * 27 25 23 29 29 H 1.48496 * 109.47101 * 30.00115 * 27 25 23 30 30 H 1.48498 * 109.46940 * 149.99811 * 27 25 23 31 31 C 1.46925 * 120.62747 * 179.97438 * 11 9 8 32 32 H 1.09005 * 109.46359 * 269.95426 * 1 2 3 33 33 H 1.09000 * 109.47185 * 29.95106 * 1 2 3 34 34 H 1.08994 * 109.47341 * 149.95881 * 1 2 3 35 35 H 1.09001 * 109.47484 * 270.17651 * 7 6 4 36 36 H 1.09004 * 109.47215 * 30.18018 * 7 6 4 37 37 H 1.09004 * 109.46958 * 150.17462 * 7 6 4 38 38 H 1.09002 * 109.58172 * 246.15452 * 12 11 9 39 39 H 1.08993 * 109.58870 * 6.43533 * 12 11 9 40 40 H 1.09007 * 109.49774 * 174.58094 * 13 12 11 41 41 H 1.08998 * 109.49869 * 294.64618 * 13 12 11 42 42 H 1.09001 * 109.46279 * 178.61016 * 14 13 12 43 43 H 1.08999 * 109.46064 * 58.65193 * 14 13 12 44 44 H 1.09000 * 110.71640 * 260.04310 * 19 17 15 45 45 H 1.08995 * 110.72137 * 23.32194 * 19 17 15 46 46 H 1.08998 * 111.00898 * 82.57462 * 20 19 17 47 47 H 1.09006 * 111.00447 * 206.38279 * 20 19 17 48 48 H 1.08997 * 110.49760 * 278.45361 * 21 20 19 49 49 H 1.09000 * 110.33957 * 156.06209 * 21 20 19 50 50 H 0.96998 * 119.99534 * 180.02562 * 26 25 23 51 51 H 1.09003 * 109.58631 * 113.84988 * 31 11 9 52 52 H 1.09001 * 109.58978 * 353.42135 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3843 1.2300 -0.0011 6 6 3.6439 -0.6980 0.0045 7 6 4.8800 -1.5600 0.0109 8 6 2.3373 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7074 -3.1282 -1.0536 11 7 1.6882 -3.1908 1.1668 12 6 1.9059 -2.5037 2.4471 13 6 0.6393 -2.6350 3.2987 14 6 0.2713 -4.1143 3.4339 15 6 -0.0152 -4.6990 2.0490 16 1 -0.8277 -4.1440 1.5801 17 6 -0.4149 -6.1694 2.1882 18 1 -0.6327 -6.5888 1.2059 19 6 0.7252 -6.9654 2.8576 20 6 -0.0362 -7.9551 3.7785 21 6 -1.2364 -7.0869 4.2395 22 7 -1.5965 -6.2865 3.0551 23 6 -2.8262 -5.7378 2.8065 24 1 -3.0640 -5.3703 1.8191 25 6 -3.7673 -5.6537 3.8235 26 7 -3.4777 -6.1019 5.0267 27 14 -5.4445 -4.9045 3.4845 28 1 -5.3962 -3.4436 3.7464 29 1 -5.8149 -5.1412 2.0661 30 1 -6.4559 -5.5332 4.3717 31 6 1.2435 -4.5911 1.1831 32 1 -0.3632 -0.0008 1.0278 33 1 -0.3633 0.8904 -0.5131 34 1 -0.3634 -0.8895 -0.5144 35 1 5.1825 -1.7691 -1.0152 36 1 5.6848 -1.0372 0.5277 37 1 4.6667 -2.4972 0.5249 38 1 2.7462 -2.9614 2.9691 39 1 2.1187 -1.4504 2.2650 40 1 0.8204 -2.2133 4.2875 41 1 -0.1791 -2.0984 2.8187 42 1 -0.6156 -4.2122 4.0600 43 1 1.1000 -4.6543 3.8918 44 1 1.3090 -7.5044 2.1114 45 1 1.3633 -6.3053 3.4449 46 1 -0.3731 -8.8283 3.2199 47 1 0.5795 -8.2510 4.6279 48 1 -0.9425 -6.4357 5.0626 49 1 -2.0713 -7.7217 4.5364 50 1 -4.1354 -6.0435 5.7373 51 1 2.0297 -5.2193 1.6019 52 1 1.0168 -4.9144 0.1671 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963377191.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:54 Heat of formation + Delta-G solvation = 52.256316 kcal Electronic energy + Delta-G solvation = -32421.828889 eV Core-core repulsion = 28422.966775 eV Total energy + Delta-G solvation = -3998.862114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.68775 -39.75506 -38.12145 -36.26743 -33.74222 -32.93960 -32.30729 -31.70656 -31.06940 -29.30610 -28.41498 -27.57447 -26.58571 -25.15735 -24.49312 -22.65950 -22.12381 -20.94429 -20.31161 -20.02670 -18.82478 -18.30140 -17.65286 -16.79633 -16.46271 -15.75793 -15.19807 -15.05976 -14.82943 -14.46692 -14.13398 -14.00795 -13.93499 -13.77472 -13.55919 -13.41174 -13.10206 -12.92507 -12.68772 -12.63581 -12.50977 -12.17794 -12.10301 -12.00961 -11.80951 -11.52094 -11.07184 -10.97011 -10.86691 -10.80896 -10.63369 -10.33508 -10.19110 -10.06593 -9.91671 -9.82681 -9.62092 -9.59282 -9.54067 -9.39406 -8.72497 -8.53936 -8.36342 -6.72206 -5.71059 -3.05217 1.48039 2.28499 2.47673 2.69255 3.27653 3.41273 3.47756 3.48689 4.24259 4.41204 4.52176 4.64576 4.89809 5.04820 5.07603 5.09957 5.24858 5.29551 5.32559 5.46794 5.49426 5.52473 5.53332 5.56635 5.64047 5.74761 5.77793 5.79367 5.82359 5.84818 5.90385 5.96737 6.05380 6.14726 6.25507 6.33314 6.34329 6.41700 6.53284 6.60005 6.67155 6.74594 6.85023 6.92656 7.05016 7.09612 7.21422 7.39132 7.57809 7.60056 7.67439 7.84944 8.32265 8.34774 9.25022 9.86133 10.55466 11.40946 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013751 B = 0.003378 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.754888 B = 8287.703296 C = 9451.210971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.120 3.880 3 N -0.296 5.296 4 N -0.465 5.465 5 H 0.440 0.560 6 C 0.125 3.875 7 C -0.097 4.097 8 C -0.272 4.272 9 C 0.595 3.405 10 O -0.541 6.541 11 N -0.597 5.597 12 C 0.113 3.887 13 C -0.133 4.133 14 C -0.104 4.104 15 C -0.103 4.103 16 H 0.071 0.929 17 C 0.167 3.833 18 H 0.033 0.967 19 C -0.130 4.130 20 C -0.150 4.150 21 C 0.175 3.825 22 N -0.590 5.590 23 C -0.222 4.222 24 H 0.073 0.927 25 C -0.004 4.004 26 N -0.918 5.918 27 Si 0.905 3.095 28 H -0.289 1.289 29 H -0.281 1.281 30 H -0.292 1.292 31 C 0.115 3.885 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.024 0.976 49 H 0.068 0.932 50 H 0.251 0.749 51 H 0.065 0.935 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.751 9.303 -4.981 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.048 4.048 3 N -0.119 5.119 4 N -0.172 5.172 5 H 0.284 0.716 6 C -0.007 4.007 7 C -0.156 4.156 8 C -0.287 4.287 9 C 0.382 3.618 10 O -0.418 6.418 11 N -0.329 5.329 12 C -0.010 4.010 13 C -0.171 4.171 14 C -0.142 4.142 15 C -0.125 4.125 16 H 0.089 0.911 17 C 0.059 3.941 18 H 0.051 0.949 19 C -0.167 4.167 20 C -0.189 4.189 21 C 0.050 3.950 22 N -0.314 5.314 23 C -0.350 4.350 24 H 0.090 0.910 25 C -0.200 4.200 26 N -0.565 5.565 27 Si 0.735 3.265 28 H -0.216 1.216 29 H -0.207 1.207 30 H -0.218 1.218 31 C -0.007 4.007 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.042 0.958 49 H 0.086 0.914 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.434 10.266 -5.417 20.945 hybrid contribution -0.467 0.085 -0.001 0.474 sum 16.967 10.351 -5.418 20.601 Atomic orbital electron populations 1.20309 0.85934 1.03969 1.03770 1.22359 0.97034 0.88756 0.96612 1.77099 0.86085 1.22123 1.26574 1.45949 1.07602 1.04642 1.58980 0.71572 1.21338 0.96110 0.85013 0.98254 1.20551 0.92135 0.98749 1.04133 1.19881 0.92080 0.94538 1.22175 1.17336 0.76761 0.84379 0.83355 1.90769 1.52061 1.67801 1.31161 1.48124 1.65903 1.13342 1.05505 1.21686 0.98172 0.97129 0.83991 1.21931 0.96969 0.99161 0.99088 1.21478 1.02381 0.92612 0.97697 1.21942 0.95534 0.99827 0.95184 0.91074 1.20885 0.87688 0.91231 0.94280 0.94930 1.22683 0.97322 0.98034 0.98700 1.23045 0.99263 0.98199 0.98355 1.21440 0.93070 0.91719 0.88763 1.44472 1.05702 1.59670 1.21555 1.18943 0.88496 1.32837 0.94749 0.90963 1.24837 0.98750 1.01105 0.95326 1.69935 1.34232 1.51108 1.01198 0.86227 0.84006 0.78930 0.77297 1.21645 1.20696 1.21821 1.21829 0.96819 0.80090 1.02003 0.89728 0.90336 0.89964 0.89403 0.90440 0.89311 0.91869 0.90560 0.91476 0.91709 0.89331 0.92825 0.92636 0.91516 0.92525 0.92700 0.95772 0.91377 0.93844 0.91672 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.28 36.01 0.37 -0.58 16 2 C 0.12 1.56 7.17 -82.02 -0.59 0.98 16 3 N -0.30 -3.67 12.63 33.90 0.43 -3.24 16 4 N -0.47 -4.33 7.29 33.86 0.25 -4.08 16 5 H 0.44 2.45 8.96 -182.71 -1.64 0.81 16 6 C 0.12 1.26 7.29 -81.60 -0.60 0.67 16 7 C -0.10 -0.66 10.25 36.00 0.37 -0.29 16 8 C -0.27 -3.58 3.85 -105.07 -0.40 -3.98 16 9 C 0.60 9.11 6.86 -12.52 -0.09 9.02 16 10 O -0.54 -10.19 16.52 5.27 0.09 -10.10 16 11 N -0.60 -8.41 2.97 -174.06 -0.52 -8.93 16 12 C 0.11 1.37 6.34 -3.71 -0.02 1.35 16 13 C -0.13 -1.85 6.08 -26.61 -0.16 -2.02 16 14 C -0.10 -1.75 4.74 -26.69 -0.13 -1.88 16 15 C -0.10 -1.81 2.10 -90.52 -0.19 -2.00 16 16 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 17 C 0.17 3.26 2.94 -66.95 -0.20 3.06 16 18 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 19 C -0.13 -2.14 5.11 -24.90 -0.13 -2.27 16 20 C -0.15 -2.73 7.10 -24.46 -0.17 -2.90 16 21 C 0.17 4.04 5.42 -2.41 -0.01 4.03 16 22 N -0.59 -14.06 2.29 -162.43 -0.37 -14.43 16 23 C -0.22 -5.89 9.84 -15.06 -0.15 -6.04 16 24 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 25 C 0.00 -0.10 5.47 -17.43 -0.10 -0.19 16 26 N -0.92 -25.98 10.57 55.49 0.59 -25.40 16 27 Si 0.90 21.79 29.55 -169.99 -5.02 16.77 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 31 C 0.11 1.74 5.57 -3.73 -0.02 1.72 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.05 8.01 -51.93 -0.42 0.63 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.67 7.96 -51.93 -0.41 0.26 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.88 6.26 -51.93 -0.33 0.56 16 40 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.09 1.89 7.54 -51.93 -0.39 1.50 16 43 H 0.05 0.85 6.12 -51.93 -0.32 0.53 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 1.04 5.54 -51.93 -0.29 0.75 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 49 H 0.07 1.79 6.92 -51.93 -0.36 1.43 16 50 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.07 0.90 6.94 -51.93 -0.36 0.54 16 52 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -32.37 402.61 -10.61 -42.99 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -9.90 Total: 1.70 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -2.21 Total: -1.33 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.37 Total: -56.08 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.37 -10.61 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377191.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.244 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds