Wall clock time and date at job start Wed Apr 1 2020 04:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32143 * 119.90536 * 2 1 4 4 C 1.32079 * 120.07327 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.06326 * 179.97438 * 4 3 2 6 6 C 1.39445 * 119.87143 * 359.97438 * 4 3 2 7 7 C 1.48152 * 120.09216 * 180.02562 * 6 4 3 8 8 O 1.21508 * 120.00130 * 284.05629 * 7 6 4 9 9 N 1.34779 * 119.99761 * 104.06284 * 7 6 4 10 10 C 1.46497 * 119.99923 * 5.10527 * 9 7 6 11 11 C 1.46504 * 119.99674 * 185.10606 * 9 7 6 12 12 C 1.53002 * 109.46797 * 239.99637 * 11 9 7 13 13 C 1.53001 * 109.46887 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46804 * 60.00632 * 13 12 11 15 15 N 1.46496 * 109.47264 * 179.97438 * 14 13 12 16 16 C 1.36939 * 120.00096 * 274.99749 * 15 14 13 17 17 H 1.08000 * 119.99690 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00235 * 179.97438 * 16 15 14 19 19 N 1.31618 * 120.00055 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00074 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47122 * 89.99531 * 20 18 16 22 22 H 1.48497 * 109.47313 * 209.99868 * 20 18 16 23 23 H 1.48501 * 109.46936 * 330.00046 * 20 18 16 24 24 C 1.53006 * 109.46945 * 299.99733 * 14 13 12 25 25 C 1.52998 * 109.47294 * 59.99953 * 24 14 13 26 26 N 1.33002 * 119.80870 * 0.02562 * 6 4 3 27 27 C 1.31804 * 119.92424 * 359.71324 * 26 6 4 28 28 C 1.50698 * 119.93559 * 180.29343 * 27 26 6 29 29 H 1.09001 * 109.47151 * 90.00198 * 1 2 3 30 30 H 1.09008 * 109.47525 * 330.00687 * 1 2 3 31 31 H 1.08994 * 109.47555 * 210.00226 * 1 2 3 32 32 H 1.09003 * 109.47172 * 85.44354 * 5 4 3 33 33 H 1.08996 * 109.47252 * 205.44131 * 5 4 3 34 34 H 1.08996 * 109.47306 * 325.44280 * 5 4 3 35 35 H 1.09001 * 109.47277 * 84.76287 * 10 9 7 36 36 H 1.08999 * 109.47089 * 204.75656 * 10 9 7 37 37 H 1.08996 * 109.47167 * 324.75753 * 10 9 7 38 38 H 1.08998 * 109.47008 * 359.97438 * 11 9 7 39 39 H 1.08994 * 109.47562 * 300.00612 * 12 11 9 40 40 H 1.09004 * 109.46852 * 60.00761 * 12 11 9 41 41 H 1.08994 * 109.47708 * 300.00754 * 13 12 11 42 42 H 1.09004 * 109.47139 * 179.97438 * 13 12 11 43 43 H 1.08999 * 109.47416 * 59.99121 * 14 13 12 44 44 H 0.96999 * 120.00267 * 94.99713 * 15 14 13 45 45 H 0.96996 * 120.00239 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.47129 * 300.00421 * 24 14 13 47 47 H 1.09001 * 109.46758 * 180.02562 * 24 14 13 48 48 H 1.08994 * 109.47845 * 179.97438 * 25 24 14 49 49 H 1.09008 * 109.47128 * 59.99891 * 25 24 14 50 50 H 1.08994 * 109.47265 * 270.26539 * 28 27 26 51 51 H 1.08997 * 109.47282 * 30.26656 * 28 27 26 52 52 H 1.09000 * 109.46999 * 150.26478 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1846 -0.0578 0.0016 7 6 5.6661 -0.0592 0.0027 8 8 6.2747 0.1954 -1.0177 9 7 6.3388 -0.3429 1.1357 10 6 5.6093 -0.7589 2.3360 11 6 7.7996 -0.2353 1.1666 12 6 8.4040 -1.5975 1.5130 13 6 9.9295 -1.4853 1.5447 14 6 10.3436 -0.4599 2.6022 15 7 11.8043 -0.3528 2.6330 16 6 12.5394 -1.2299 3.3851 17 1 12.0422 -2.0008 3.9551 18 6 13.9235 -1.1288 3.4139 19 7 14.6300 -1.9722 4.1363 20 14 14.7834 0.2041 2.4274 21 1 14.9251 1.4242 3.2621 22 1 16.1282 -0.2736 2.0167 23 1 13.9805 0.5215 1.2191 24 6 9.7391 0.9023 2.2558 25 6 8.2135 0.7901 2.2239 26 7 3.5165 -1.2079 0.0016 27 6 2.1985 -1.2026 0.0063 28 6 1.4413 -2.5055 0.0130 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 0.8901 0.5137 31 1 -0.3634 -0.8899 0.5138 32 1 4.3475 2.8121 1.0242 33 1 5.2234 2.3080 -0.4410 34 1 3.6852 3.1922 -0.5837 35 1 5.4255 -1.8325 2.2958 36 1 6.2016 -0.5247 3.2206 37 1 4.6581 -0.2290 2.3850 38 1 8.1611 0.0843 0.1893 39 1 8.0424 -1.9176 2.4902 40 1 8.1094 -2.3279 0.7595 41 1 10.2908 -1.1654 0.5674 42 1 10.3602 -2.4557 1.7920 43 1 9.9823 -0.7797 3.5795 44 1 12.2508 0.3393 2.1207 45 1 15.5972 -1.9013 4.1568 46 1 10.1002 1.2222 1.2784 47 1 10.0344 1.6329 3.0088 48 1 7.7828 1.7606 1.9776 49 1 7.8522 0.4702 3.2014 50 1 1.2592 -2.8252 -1.0130 51 1 2.0280 -3.2641 0.5311 52 1 0.4891 -2.3697 0.5257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963650187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:10 Heat of formation + Delta-G solvation = 13.723394 kcal Electronic energy + Delta-G solvation = -30920.824621 eV Core-core repulsion = 26920.291594 eV Total energy + Delta-G solvation = -4000.533027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.93332 -40.13411 -38.14939 -35.69014 -35.40274 -34.82540 -33.41492 -31.16585 -30.78058 -30.51276 -29.48142 -28.21829 -27.19328 -26.34059 -24.17463 -23.40699 -22.55563 -22.34435 -21.15538 -19.83554 -19.42385 -18.61609 -17.72445 -17.33235 -16.86692 -15.87703 -15.69577 -15.27820 -15.16634 -14.66857 -14.31636 -14.06519 -13.97356 -13.79014 -13.63398 -13.54242 -13.44798 -13.27703 -13.08847 -12.94329 -12.72092 -12.65959 -12.64339 -12.47273 -12.23731 -12.19874 -11.97511 -11.96430 -11.78292 -11.26092 -10.98998 -10.87403 -10.82838 -10.73668 -10.42690 -10.27493 -10.13285 -9.78522 -9.56827 -9.44579 -9.26796 -8.90136 -8.78067 -7.25121 -5.75730 -3.10962 0.13576 0.62871 2.13992 2.57984 3.05701 3.39184 3.42549 3.45350 3.47009 3.64129 3.89447 4.05909 4.44271 4.45842 4.60677 4.69333 4.79544 4.85918 4.87385 4.92822 4.98775 5.09186 5.09866 5.16078 5.19035 5.22793 5.29040 5.37189 5.40642 5.44810 5.46827 5.50629 5.58403 5.59765 5.64467 5.74402 5.78015 5.91969 5.93678 6.10458 6.15761 6.17387 6.29051 6.43942 6.48592 6.59979 6.78178 6.88293 7.02089 7.08710 7.28095 7.79374 8.00920 8.43610 9.22458 9.95282 10.15251 11.42635 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026409 B = 0.002125 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.981245 B =13170.966508 C =13662.992017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.096 3.904 3 N -0.435 5.435 4 C 0.117 3.883 5 C -0.110 4.110 6 C 0.046 3.954 7 C 0.584 3.416 8 O -0.521 6.521 9 N -0.592 5.592 10 C 0.080 3.920 11 C 0.138 3.862 12 C -0.121 4.121 13 C -0.133 4.133 14 C 0.182 3.818 15 N -0.749 5.749 16 C -0.241 4.241 17 H 0.090 0.910 18 C 0.003 3.997 19 N -0.935 5.935 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.125 4.125 25 C -0.120 4.120 26 N -0.404 5.404 27 C 0.074 3.926 28 C -0.103 4.103 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.203 4.761 -6.538 33.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.046 4.046 3 N -0.151 5.151 4 C -0.023 4.023 5 C -0.168 4.168 6 C -0.096 4.096 7 C 0.368 3.632 8 O -0.396 6.396 9 N -0.324 5.324 10 C -0.063 4.063 11 C 0.037 3.963 12 C -0.160 4.160 13 C -0.174 4.174 14 C 0.073 3.927 15 N -0.391 5.391 16 C -0.371 4.371 17 H 0.108 0.892 18 C -0.193 4.193 19 N -0.583 5.583 20 Si 0.714 3.286 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.163 4.163 25 C -0.158 4.158 26 N -0.121 5.121 27 C -0.069 4.069 28 C -0.160 4.160 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.103 0.897 51 H 0.101 0.899 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -31.730 4.719 -6.907 32.814 hybrid contribution 0.700 0.746 -0.684 1.230 sum -31.029 5.465 -7.590 32.408 Atomic orbital electron populations 1.20828 0.87338 1.04300 1.03838 1.22359 0.98567 0.88794 0.94843 1.68222 1.07577 1.28936 1.10337 1.22163 0.90098 0.96009 0.94070 1.20842 0.99989 0.91996 1.03987 1.21878 0.95785 0.90412 1.01567 1.17642 0.84878 0.76886 0.83766 1.90825 1.68212 1.48901 1.31671 1.47881 1.07696 1.65759 1.11027 1.21760 0.96286 1.00493 0.87764 1.21378 0.76625 0.96765 1.01564 1.21855 0.97285 0.95339 1.01525 1.22208 0.92103 1.02140 1.00901 1.20209 0.84333 0.91702 0.96488 1.42798 1.01107 1.38032 1.57190 1.19070 0.89065 1.08706 1.20260 0.89239 1.24677 0.96121 0.98668 0.99816 1.69699 1.05730 1.38637 1.44199 0.86553 0.79307 0.82366 0.80332 1.21141 1.21825 1.20276 1.21808 0.93238 0.99260 1.02033 1.21821 0.96986 0.98269 0.98764 1.68287 1.08307 1.27971 1.07489 1.22166 0.90011 0.97000 0.97719 1.20785 0.99280 0.92152 1.03798 0.89560 0.89905 0.89565 0.89451 0.89477 0.89418 0.91820 0.89796 0.92462 0.87891 0.91806 0.92197 0.92500 0.91103 0.92686 0.80676 0.93113 0.92044 0.91269 0.91955 0.91463 0.89737 0.89863 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.79 36.00 0.35 -0.11 16 2 C 0.10 0.81 6.79 -82.28 -0.56 0.26 16 3 N -0.44 -4.54 10.34 -5.24 -0.05 -4.59 16 4 C 0.12 1.29 6.82 -82.04 -0.56 0.73 16 5 C -0.11 -1.00 9.89 36.00 0.36 -0.64 16 6 C 0.05 0.57 4.69 -82.84 -0.39 0.18 16 7 C 0.58 8.03 6.01 -12.19 -0.07 7.95 16 8 O -0.52 -8.80 15.81 5.36 0.08 -8.71 16 9 N -0.59 -7.11 2.76 -174.94 -0.48 -7.59 16 10 C 0.08 0.75 9.22 59.85 0.55 1.30 16 11 C 0.14 1.81 2.51 -67.93 -0.17 1.64 16 12 C -0.12 -1.68 5.20 -26.73 -0.14 -1.82 16 13 C -0.13 -2.27 5.50 -26.73 -0.15 -2.41 16 14 C 0.18 3.34 2.77 -67.93 -0.19 3.15 16 15 N -0.75 -17.42 4.93 -53.42 -0.26 -17.68 16 16 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 17 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 18 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 19 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 20 Si 0.88 22.19 27.74 -169.99 -4.71 17.47 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 C -0.12 -1.85 5.39 -26.73 -0.14 -1.99 16 25 C -0.12 -1.44 5.19 -26.73 -0.14 -1.58 16 26 N -0.40 -4.74 10.32 -5.88 -0.06 -4.80 16 27 C 0.07 0.66 6.79 -82.42 -0.56 0.10 16 28 C -0.10 -0.52 9.78 36.00 0.35 -0.17 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 31 H 0.09 0.18 5.93 -51.93 -0.31 -0.12 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.90 6.46 -51.93 -0.34 0.56 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.69 6.44 -51.93 -0.33 0.36 16 37 H 0.06 0.50 6.99 -51.93 -0.36 0.14 16 38 H 0.10 1.54 6.91 -51.93 -0.36 1.18 16 39 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 44 H 0.36 8.31 5.66 -40.82 -0.23 8.08 16 45 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.07 0.75 6.67 -51.92 -0.35 0.40 16 50 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 52 H 0.08 0.21 5.94 -51.93 -0.31 -0.10 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -34.81 407.81 -8.77 -43.58 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.49 Total: 5.03 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.71 Total: -0.30 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.09 Total: -63.21 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.81 -8.77 -43.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963650187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.300 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds